-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F., Gish, W., Miller, W., Myers, E. W. & Lipman, D. J. (1990). Basic local alignment search tool. J Mol Biol 215, 403-410.
-
(1990)
J Mol Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
84874066246
-
Listeria fleischmannii sp. nov., isolated from cheese
-
Bertsch, D., Rau, J., Eugster, M. R., Haug, M. C., Lawson, P. A., Lacroix, C. & Meile, L. (2013). Listeria fleischmannii sp. nov., isolated from cheese. Int J Syst Evol Microbiol 63, 526-532.
-
(2013)
Int J Syst Evol Microbiol
, vol.63
, pp. 526-532
-
-
Bertsch, D.1
Rau, J.2
Eugster, M.R.3
Haug, M.C.4
Lawson, P.A.5
Lacroix, C.6
Meile, L.7
-
3
-
-
0026708133
-
API Listeria, a new and promising one-day system to identify Listeria isolates
-
Bille, J., Catimel, B., Bannerman, E., Jacquet, C., Yersin, M. N., Caniaux, I., Monget, D. & Rocourt, J. (1992). API Listeria, a new and promising one-day system to identify Listeria isolates. Appl Environ Microbiol 58, 1857-1860.
-
(1992)
Appl Environ Microbiol
, vol.58
, pp. 1857-1860
-
-
Bille, J.1
Catimel, B.2
Bannerman, E.3
Jacquet, C.4
Yersin, M.N.5
Caniaux, I.6
Monget, D.7
Rocourt, J.8
-
4
-
-
0026502613
-
Listeria ivanovii subsp. londoniensis subsp. nov
-
Boerlin, P., Rocourt, J., Grimont, F., Grimont, P. A. D., Jacquet, C. & Piffaretti, J.-C. (1992). Listeria ivanovii subsp. londoniensis subsp. nov. Int J Syst Bacteriol 42, 69-73.
-
(1992)
Int J Syst Bacteriol
, vol.42
, pp. 69-73
-
-
Boerlin, P.1
Rocourt, J.2
Grimont, F.3
Grimont, P.A.D.4
Jacquet, C.5
Piffaretti, J.-C.6
-
5
-
-
0034043778
-
Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis
-
Castresana, J. (2000). Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis. Mol Biol Evol 17, 540-552.
-
(2000)
Mol Biol Evol
, vol.17
, pp. 540-552
-
-
Castresana, J.1
-
6
-
-
84872836707
-
Defining bacterial species in the genomic era: Insights from the genus Acinetobacter
-
Chan, J. Z.-M., Halachev, M. R., Loman, N. J., Constantinidou, C. & Pallen, M. J. (2012). Defining bacterial species in the genomic era: insights from the genus Acinetobacter. BMC Microbiol 12, 302.
-
(2012)
BMC Microbiol
, vol.12
, pp. 302
-
-
Chan, J.Z.-M.1
Halachev, M.R.2
Loman, N.J.3
Constantinidou, C.4
Pallen, M.J.5
-
7
-
-
3042631307
-
Genome sequence assembly using trace signals and additional sequence information
-
In, October 4-6 1999, Hannover, Germany
-
Chevreux, B., Wetter, T. & Suhai, S. (1999). Genome sequence assembly using trace signals and additional sequence information. In German Conference on Bioinformatics, October 4-6 1999, Hannover, Germany, pp. 45-56.
-
(1999)
German Conference on Bioinformatics
, pp. 45-56
-
-
Chevreux, B.1
Wetter, T.2
Suhai, S.3
-
8
-
-
0035527404
-
Bacterial species and speciation
-
Cohan, F. M. (2001). Bacterial species and speciation. Syst Biol 50, 513-524.
-
(2001)
Syst Biol
, vol.50
, pp. 513-524
-
-
Cohan, F.M.1
-
9
-
-
84883782342
-
Genome sequencing identifies Listeria fleischmannii subsp. coloradonensis subsp. nov., isolated from a ranch
-
den Bakker, H. C., Manuel, C. S., Fortes, E. D., Wiedmann, M. & Nightingale, K. K. (2013). Genome sequencing identifies Listeria fleischmannii subsp. coloradonensis subsp. nov., isolated from a ranch. Int J Syst Evol Microbiol 63, 3257-3268.
-
(2013)
Int J Syst Evol Microbiol
, vol.63
, pp. 3257-3268
-
-
den Bakker, H.C.1
Manuel, C.S.2
Fortes, E.D.3
Wiedmann, M.4
Nightingale, K.K.5
-
10
-
-
33645051956
-
A spontaneous genomic deletion in Listeria ivanovii identifies LIPI-2, a species-specific pathogenicity island encoding sphingomyelinase and numerous internalins
-
Domínguez-Bernal, G., Müller-Altrock, S., González-Zorn, B., Scortti, M., Herrmann, P., Monzó, H. J., Lacharme, L., Kreft, J. & Vázquez-Boland, J. A. (2006). A spontaneous genomic deletion in Listeria ivanovii identifies LIPI-2, a species-specific pathogenicity island encoding sphingomyelinase and numerous internalins. Mol Microbiol 59, 415-432.
-
(2006)
Mol Microbiol
, vol.59
, pp. 415-432
-
-
Domínguez-Bernal, G.1
Müller-Altrock, S.2
González-Zorn, B.3
Scortti, M.4
Herrmann, P.5
Monzó, H.J.6
Lacharme, L.7
Kreft, J.8
Vázquez-Boland, J.A.9
-
11
-
-
84902671800
-
A mannitol fermenting Listeria, Listeria grayi sp. n
-
In, 13-16 July 1996, Bilthoven, Netherlands
-
Errebo Larsen, H. & Seeliger, H. P. R. (1966). A mannitol fermenting Listeria, Listeria grayi sp. n. In Proceedings of the Third International Symposiumon Listeriosis, 13-16 July 1996, Bilthoven, Netherlands, p. 35.
-
(1966)
Proceedings of the Third International Symposiumon Listeriosis
, pp. 35
-
-
Errebo Larsen, H.1
Seeliger, H.P.R.2
-
12
-
-
77953302886
-
Listeria marthii sp. nov., isolated from the natural environment, Finger Lakes National Forest
-
Graves, L. M., Helsel, L. O., Steigerwalt, A. G., Morey, R. E., Daneshvar, M. I., Roof, S. E., Orsi, R. H., Fortes, E. D., Milillo, S. R. & other authors (2010). Listeria marthii sp. nov., isolated from the natural environment, Finger Lakes National Forest. Int J Syst Evol Microbiol 60, 1280-1288.
-
(2010)
Int J Syst Evol Microbiol
, vol.60
, pp. 1280-1288
-
-
Graves, L.M.1
Helsel, L.O.2
Steigerwalt, A.G.3
Morey, R.E.4
Daneshvar, M.I.5
Roof, S.E.6
Orsi, R.H.7
Fortes, E.D.8
Milillo, S.R.9
-
13
-
-
84863229597
-
VarScan 2: Somatic mutation and copy number alteration discovery in cancer by exome sequencing
-
Koboldt, D. C., Zhang, Q., Larson, D. E., Shen, D., McLellan, M. D., Lin, L., Miller, C. A., Mardis, E. R., Ding, L. & Wilson, R. K. (2012). VarScan 2: somatic mutation and copy number alteration discovery in cancer by exome sequencing. Genome Res 22, 568-576.
-
(2012)
Genome Res
, vol.22
, pp. 568-576
-
-
Koboldt, D.C.1
Zhang, Q.2
Larson, D.E.3
Shen, D.4
McLellan, M.D.5
Lin, L.6
Miller, C.A.7
Mardis, E.R.8
Ding, L.9
Wilson, R.K.10
-
14
-
-
24944587193
-
Towards a genome-based taxonomy for prokaryotes
-
Konstantinidis, K. T. & Tiedje, J. M. (2005). Towards a genome-based taxonomy for prokaryotes. J Bacteriol 187, 6258-6264.
-
(2005)
J Bacteriol
, vol.187
, pp. 6258-6264
-
-
Konstantinidis, K.T.1
Tiedje, J.M.2
-
15
-
-
35748954014
-
Prokaryotic taxonomy and phylogeny in the genomic era: Advancements and challenges ahead
-
Konstantinidis, K. T. & Tiedje, J. M. (2007). Prokaryotic taxonomy and phylogeny in the genomic era: advancements and challenges ahead. Curr Opin Microbiol 10, 504-509.
-
(2007)
Curr Opin Microbiol
, vol.10
, pp. 504-509
-
-
Konstantinidis, K.T.1
Tiedje, J.M.2
-
16
-
-
33751217150
-
The bacterial species definition in the genomic era
-
Konstantinidis, K. T., Ramette, A. & Tiedje, J. M. (2006). The bacterial species definition in the genomic era. Philos Trans R Soc Lond B Biol Sci 361, 1929-1940.
-
(2006)
Philos Trans R Soc Lond B Biol Sci
, vol.361
, pp. 1929-1940
-
-
Konstantinidis, K.T.1
Ramette, A.2
Tiedje, J.M.3
-
17
-
-
84872467231
-
Reassessment of the Listeria monocytogenes pan-genome reveals dynamic integration hotspots and mobile genetic elements as major components of the accessory genome
-
Kuenne, C., Billion, A., Mraheil, M. A., Strittmatter, A., Daniel, R., Goesmann, A., Barbuddhe, S., Hain, T. & Chakraborty, T. (2013). Reassessment of the Listeria monocytogenes pan-genome reveals dynamic integration hotspots and mobile genetic elements as major components of the accessory genome. BMC Genomics 14, 47.
-
(2013)
BMC Genomics
, vol.14
, pp. 47
-
-
Kuenne, C.1
Billion, A.2
Mraheil, M.A.3
Strittmatter, A.4
Daniel, R.5
Goesmann, A.6
Barbuddhe, S.7
Hain, T.8
Chakraborty, T.9
-
18
-
-
84874089555
-
Listeria weihenstephanensis sp. nov., isolated from the water plant Lemna trisulca taken from a freshwater pond
-
Lang Halter, E., Neuhaus, K. & Scherer, S. (2013). Listeria weihenstephanensis sp. nov., isolated from the water plant Lemna trisulca taken from a freshwater pond. Int J Syst Evol Microbiol 63, 641-647.
-
(2013)
Int J Syst Evol Microbiol
, vol.63
, pp. 641-647
-
-
Lang Halter, E.1
Neuhaus, K.2
Scherer, S.3
-
19
-
-
77956669931
-
Listeria rocourtiae sp. nov
-
Leclercq, A., Clermont, D., Bizet, C., Grimont, P. A. D., Le Flèche-Matéos, A., Roche, S. M., Buchrieser, C., Cadet-Daniel, V., Le Monnier, A. & other authors (2010). Listeria rocourtiae sp. nov. Int J Syst Evol Microbiol 60, 2210-2214.
-
(2010)
Int J Syst Evol Microbiol
, vol.60
, pp. 2210-2214
-
-
Leclercq, A.1
Clermont, D.2
Bizet, C.3
Grimont, P.A.D.4
Le Flèche-Matéos, A.5
Roche, S.M.6
Buchrieser, C.7
Cadet-Daniel, V.8
Le Monnier, A.9
-
20
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
Li, H. & Durbin, R. (2009). Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760.
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
21
-
-
75749135637
-
Genus I. Listeria Pirie 1940a 383AL
-
In, 2nd edn, Edited by P. De Vos, G. Garrity, D. Jones, N. R. Krieg, W. Ludwig, F. A. Rainey, K.-H. Schleifer & W. B. Whitman. New York: Springer
-
McLauchlin, J. & Rees, C. (2009). Genus I. Listeria Pirie 1940a 383AL. In Bergey's Manual of Systematic Bacteriology, 2nd edn, vol. 3, pp. 244-257. Edited by P. De Vos, G. Garrity, D. Jones, N. R. Krieg, W. Ludwig, F. A. Rainey, K.-H. Schleifer & W. B. Whitman. New York: Springer.
-
(2009)
Bergey's Manual of Systematic Bacteriology
, vol.3
, pp. 244-257
-
-
McLauchlin, J.1
Rees, C.2
-
22
-
-
37049202112
-
The genus Listerella Pirie
-
Pirie, J. H. (1940). The genus Listerella Pirie. Science 91, 383.
-
(1940)
Science
, vol.91
, pp. 383
-
-
Pirie, J.H.1
-
23
-
-
73149098333
-
Shifting the genomic gold standard for the prokaryotic species definition
-
Richter, M. & Rosselló-Móra, R. (2009). Shifting the genomic gold standard for the prokaryotic species definition. Proc Natl Acad Sci U S A 106, 19126-19131.
-
(2009)
Proc Natl Acad Sci U S A
, vol.106
, pp. 19126-19131
-
-
Richter, M.1
Rosselló-Móra, R.2
-
24
-
-
0031791978
-
Unidentified Listeria-like bacteria isolated from cheese
-
Rijpens, N., Vlaemynck, G., Rossau, R., Herman, L. & Jannes, G. (1998). Unidentified Listeria-like bacteria isolated from cheese. Lett Appl Microbiol 27, 198-202.
-
(1998)
Lett Appl Microbiol
, vol.27
, pp. 198-202
-
-
Rijpens, N.1
Vlaemynck, G.2
Rossau, R.3
Herman, L.4
Jannes, G.5
-
25
-
-
0021037239
-
Listeria welshimeri sp. nov. and Listeria seeligeri sp. nov
-
Rocourt, J. & Grimont, P. A. D. (1983). Listeria welshimeri sp. nov. and Listeria seeligeri sp. nov. Int J Syst Bacteriol 33, 866-869.
-
(1983)
Int J Syst Bacteriol
, vol.33
, pp. 866-869
-
-
Rocourt, J.1
Grimont, P.A.D.2
-
26
-
-
84864076595
-
Diversity of Listeria species in urban and natural environments
-
Sauders, B. D., Overdevest, J., Fortes, E., Windham, K., Schukken, Y., Lembo, A. & Wiedmann, M. (2012). Diversity of Listeria species in urban and natural environments. Appl Environ Microbiol 78, 4420-4433.
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 4420-4433
-
-
Sauders, B.D.1
Overdevest, J.2
Fortes, E.3
Windham, K.4
Schukken, Y.5
Lembo, A.6
Wiedmann, M.7
-
27
-
-
12744272974
-
Evolutionary history of the genus Listeria and its virulence genes
-
Schmid, M. W., Ng, E. Y. W., Lampidis, R., Emmerth, M., Walcher, M., Kreft, J., Goebel, W., Wagner, M. & Schleifer, K.-H. (2005). Evolutionary history of the genus Listeria and its virulence genes. Syst Appl Microbiol 28, 1-18.
-
(2005)
Syst Appl Microbiol
, vol.28
, pp. 1-18
-
-
Schmid, M.W.1
Ng, E.Y.W.2
Lampidis, R.3
Emmerth, M.4
Walcher, M.5
Kreft, J.6
Goebel, W.7
Wagner, M.8
Schleifer, K.-H.9
-
29
-
-
0021268753
-
Listeria ivanovii sp. nov
-
Seeliger, H. P. R., Rocourt, J., Schrettenbrunner, A., Grimont, P. A. D. & Jones, D. (1984). Listeria ivanovii sp. nov. Int J Syst Bacteriol 34, 336-337.
-
(1984)
Int J Syst Bacteriol
, vol.34
, pp. 336-337
-
-
Seeliger, H.P.R.1
Rocourt, J.2
Schrettenbrunner, A.3
Grimont, P.A.D.4
Jones, D.5
-
30
-
-
0015863474
-
Intrageneric relatedness of Listeria Pirie
-
Stuart, S. E. & Welshimer, H. J. (1973). Intrageneric relatedness of Listeria Pirie. Int J Syst Bacteriol 23, 8-14.
-
(1973)
Int J Syst Bacteriol
, vol.23
, pp. 8-14
-
-
Stuart, S.E.1
Welshimer, H.J.2
-
31
-
-
84898456100
-
-
US Food and Drug Administration
-
US Food and Drug Administration (2013). Bacteriological Analytical Manual. http://www.fda.gov/food/foodscienceresearch/ laboratorymethods/ucm2006949.htm
-
(2013)
Bacteriological Analytical Manual.
-
-
-
33
-
-
55649110049
-
A simple, fast, and accurate method of phylogenomic inference
-
Wu, M. & Eisen, J. A. (2008). A simple, fast, and accurate method of phylogenomic inference. Genome Biol 9, R151.
-
(2008)
Genome Biol
, vol.9
-
-
Wu, M.1
Eisen, J.A.2
|