-
1
-
-
0034735782
-
Bacterial dehalorespiration with chlorinated benzenes
-
Adrian, L., Szewzyk, U., Wecke, J. & Görisch, H. (2000). Bacterial dehalorespiration with chlorinated benzenes. Nature 408, 580-583.
-
(2000)
Nature
, vol.408
, pp. 580-583
-
-
Adrian, L.1
Szewzyk, U.2
Wecke, J.3
Görisch, H.4
-
2
-
-
67649606879
-
'Dehalococcoides' sp. strain CBDB1 extensively dechlorinates the commercial polychlorinated biphenyl mixture aroclor 1260
-
Adrian, L., Dudková, V., Demnerová, K. & Bedard, D. L. (2009). "Dehalococcoides" sp. strain CBDB1 extensively dechlorinates the commercial polychlorinated biphenyl mixture aroclor 1260. Appl Environ Microbiol 75, 4516-4524.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 4516-4524
-
-
Adrian, L.1
Dudková, V.2
Demnerová, K.3
Bedard, D.L.4
-
3
-
-
81055155829
-
Identification of a Bacillus anthracis specific indel in the yeaC gene and development of a rapid pyrosequencing assay for distinguishing B. anthracis from the B. cereus group
-
Ahmod, N. Z., Gupta, R. S. & Shah, H. N. (2011). Identification of a Bacillus anthracis specific indel in the yeaC gene and development of a rapid pyrosequencing assay for distinguishing B. anthracis from the B. cereus group. J Microbiol Methods 87, 278-285.
-
(2011)
J Microbiol Methods
, vol.87
, pp. 278-285
-
-
Ahmod, N.Z.1
Gupta, R.S.2
Shah, H.N.3
-
4
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schäffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
5
-
-
84879951966
-
Protein based molecular markers provide reliable means to understand prokaryotic phylogeny and support Darwinian mode of evolution
-
Bhandari, V., Naushad, H. S. & Gupta, R. S. (2012). Protein based molecular markers provide reliable means to understand prokaryotic phylogeny and support Darwinian mode of evolution. Front Cell Infect Microbiol 2, 98.
-
(2012)
Front Cell Infect Microbiol
, vol.2
, pp. 98
-
-
Bhandari, V.1
Naushad, H.S.2
Gupta, R.S.3
-
6
-
-
84876074200
-
Dehalogenimonas alkenigignens sp. nov., a chlorinatedalkane-dehalogenating bacterium isolated from groundwater
-
Bowman, K. S., Nobre, M. F., da Costa, M. S., Rainey, F. A. & Moe, W. M. (2013). Dehalogenimonas alkenigignens sp. nov., a chlorinatedalkane-dehalogenating bacterium isolated from groundwater. Int J Syst Evol Microbiol 63, 1492-1498.
-
(2013)
Int J Syst Evol Microbiol
, vol.63
, pp. 1492-1498
-
-
Bowman, K.S.1
Nobre, M.F.2
da Costa, M.S.3
Rainey, F.A.4
Moe, W.M.5
-
7
-
-
70149123013
-
Isolation and characterization of 'Dehalococcoides' sp. strain MB, which dechlorinates tetrachloroethene to trans-1,2-dichloroethene
-
Cheng, D. & He, J. (2009). Isolation and characterization of "Dehalococcoides" sp. strain MB, which dechlorinates tetrachloroethene to trans-1,2-dichloroethene. Appl Environ Microbiol 75, 5910-5918.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 5910-5918
-
-
Cheng, D.1
He, J.2
-
8
-
-
73449117862
-
A Dehalococcoides-containing co-culture that dechlorinates tetrachloroethene to trans-1,2-dichloroethene
-
Cheng, D., Chow, W. L. & He, J. (2010). A Dehalococcoides-containing co-culture that dechlorinates tetrachloroethene to trans-1,2-dichloroethene. ISME J 4, 88-97.
-
(2010)
ISME J
, vol.4
, pp. 88-97
-
-
Cheng, D.1
Chow, W.L.2
He, J.3
-
9
-
-
47649132415
-
Signature genes as a phylogenomic tool
-
Dutilh, B. E., Snel, B., Ettema, T. J. & Huynen, M. A. (2008). Signature genes as a phylogenomic tool. Mol Biol Evol 25, 1659-1667.
-
(2008)
Mol Biol Evol
, vol.25
, pp. 1659-1667
-
-
Dutilh, B.E.1
Snel, B.2
Ettema, T.J.3
Huynen, M.A.4
-
10
-
-
26444558214
-
How essential are nonessential genes?
-
Fang, G., Rocha, E. & Danchin, A. (2005). How essential are nonessential genes? Mol Biol Evol 22, 2147-2156.
-
(2005)
Mol Biol Evol
, vol.22
, pp. 2147-2156
-
-
Fang, G.1
Rocha, E.2
Danchin, A.3
-
11
-
-
1842627895
-
Dehalococcoides ethenogenes strain 195 reductively dechlorinates diverse chlorinated aromatic pollutants
-
Fennell, D. E., Nijenhuis, I., Wilson, S. F., Zinder, S. H. & Häggblom, M. M. (2004). Dehalococcoides ethenogenes strain 195 reductively dechlorinates diverse chlorinated aromatic pollutants. Environ Sci Technol 38, 2075-2081.
-
(2004)
Environ Sci Technol
, vol.38
, pp. 2075-2081
-
-
Fennell, D.E.1
Nijenhuis, I.2
Wilson, S.F.3
Zinder, S.H.4
Häggblom, M.M.5
-
12
-
-
27844604206
-
Conserved indels in protein sequences that are characteristic of the phylum Actinobacteria
-
Gao, B. & Gupta, R. S. (2005). Conserved indels in protein sequences that are characteristic of the phylum Actinobacteria. Int J Syst Evol Microbiol 55, 2401-2412.
-
(2005)
Int J Syst Evol Microbiol
, vol.55
, pp. 2401-2412
-
-
Gao, B.1
Gupta, R.S.2
-
13
-
-
84856228043
-
Microbial systematics in the postgenomics era
-
Gao, B. & Gupta, R. S. (2012a). Microbial systematics in the postgenomics era. Antonie van Leeuwenhoek 101, 45-54.
-
(2012)
Antonie van Leeuwenhoek
, vol.101
, pp. 45-54
-
-
Gao, B.1
Gupta, R.S.2
-
14
-
-
84860523799
-
Phylogenetic framework and molecular signatures for the main clades of the phylum Actinobacteria
-
Gao, B. & Gupta, R. S. (2012b). Phylogenetic framework and molecular signatures for the main clades of the phylum Actinobacteria. Microbiol Mol Biol Rev 76, 66-112.
-
(2012)
Microbiol Mol Biol Rev
, vol.76
, pp. 66-112
-
-
Gao, B.1
Gupta, R.S.2
-
15
-
-
23844479263
-
Conserved indels in essential proteins that are distinctive characteristics of Chlamydiales and provide novel means for their identification
-
Griffiths, E., Petrich, A. K. & Gupta, R. S. (2005). Conserved indels in essential proteins that are distinctive characteristics of Chlamydiales and provide novel means for their identification. Microbiology 151, 2647-2657.
-
(2005)
Microbiology
, vol.151
, pp. 2647-2657
-
-
Griffiths, E.1
Petrich, A.K.2
Gupta, R.S.3
-
16
-
-
77149149384
-
Signature proteins for the major clades of Cyanobacteria
-
Gupta, R. S. & Mathews, D. W. (2010). Signature proteins for the major clades of Cyanobacteria. BMC Evol Biol 10, 24.
-
(2010)
BMC Evol Biol
, vol.10
, pp. 24
-
-
Gupta, R.S.1
Mathews, D.W.2
-
17
-
-
39049145171
-
Phylogenomics and signature proteins for the alpha Proteobacteria and its main groups
-
Gupta, R. S. & Mok, A. (2007). Phylogenomics and signature proteins for the alpha Proteobacteria and its main groups. BMC Microbiol 7, 106.
-
(2007)
BMC Microbiol
, vol.7
, pp. 106
-
-
Gupta, R.S.1
Mok, A.2
-
18
-
-
84871819099
-
Phylogenetic framework and molecular signatures for the class Chloroflexi and its different clades; proposal for division of the class Chloroflexi class. nov. into the suborder Chloroflexineae subord. nov., consisting of the emended family Oscillochloridaceae and the family Chloroflexaceae fam. nov., and the suborder Roseiflexineae subord. nov., containing the family Roseiflexaceae fam. nov
-
Gupta, R. S., Chander, P. & George, S. (2013). Phylogenetic framework and molecular signatures for the class Chloroflexi and its different clades; proposal for division of the class Chloroflexi class. nov. into the suborder Chloroflexineae subord. nov., consisting of the emended family Oscillochloridaceae and the family Chloroflexaceae fam. nov., and the suborder Roseiflexineae subord. nov., containing the family Roseiflexaceae fam. nov. Antonie van Leeuwenhoek 103, 99-119.
-
(2013)
Antonie van Leeuwenhoek
, vol.103
, pp. 99-119
-
-
Gupta, R.S.1
Chander, P.2
George, S.3
-
19
-
-
84856408153
-
Quantitative real-time PCR (qPCR) detection chemistries affect enumeration of the Dehalococcoides 16S rRNA gene in groundwater
-
Hatt, J. K. & Löffler, F. E. (2012). Quantitative real-time PCR (qPCR) detection chemistries affect enumeration of the Dehalococcoides 16S rRNA gene in groundwater. J Microbiol Methods 88, 263-270.
-
(2012)
J Microbiol Methods
, vol.88
, pp. 263-270
-
-
Hatt, J.K.1
Löffler, F.E.2
-
20
-
-
84875080705
-
Overview of organohalide-respiring bacteria and a proposal for a classification system for reductive dehalogenases
-
Hug, L. A., Maphosa, F., Leys, D., Löffler, F. E., Smidt, H., Edwards, E. A. & Adrian, L. (2013). Overview of organohalide-respiring bacteria and a proposal for a classification system for reductive dehalogenases. Philos Trans R Soc Lond B Biol Sci 368, 20120322.
-
(2013)
Philos Trans R Soc Lond B Biol Sci
, vol.368
, pp. 20120322
-
-
Hug, L.A.1
Maphosa, F.2
Leys, D.3
Löffler, F.E.4
Smidt, H.5
Edwards, E.A.6
Adrian, L.7
-
21
-
-
21844434913
-
Evolutionary origins of genomic repertoires in bacteria
-
Lerat, E., Daubin, V., Ochman, H. & Moran, N. A. (2005). Evolutionary origins of genomic repertoires in bacteria. PLoS Biol 3, e130.
-
(2005)
PLoS Biol
, vol.3
-
-
Lerat, E.1
Daubin, V.2
Ochman, H.3
Moran, N.A.4
-
22
-
-
33744930596
-
Harnessing microbial activities for environmental cleanup
-
Löffler, F. E. & Edwards, E. A. (2006). Harnessing microbial activities for environmental cleanup. Curr Opin Biotechnol 17, 274-284.
-
(2006)
Curr Opin Biotechnol
, vol.17
, pp. 274-284
-
-
Löffler, F.E.1
Edwards, E.A.2
-
23
-
-
0141919038
-
16S rRNA genebased detection of tetrachloroethene-dechlorinating Desulfuromonas and Dehalococcoides species
-
Löffler, F. E., Sun, Q., Li, J. & Tiedje, J. M. (2000). 16S rRNA genebased detection of tetrachloroethene-dechlorinating Desulfuromonas and Dehalococcoides species. Appl Environ Microbiol 66, 1369-1374.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 1369-1374
-
-
Löffler, F.E.1
Sun, Q.2
Li, J.3
Tiedje, J.M.4
-
24
-
-
84874041126
-
Dehalococcoides mccartyi gen. nov., sp. nov., obligately organohalide-respiring anaerobic bacteria relevant to halogen cycling and bioremediation, belong to a novel bacterial class, Dehalococcoidia classis nov., order Dehalococcoidales ord. nov. and family Dehalococcoidaceae fam. nov., within the phylum Chloroflexi
-
Löffler, F. E., Yan, J., Ritalahti, K. M., Adrian, L., Edwards, E. A., Konstantinidis, K. T., Müller, J. A., Fullerton, H., Zinder, S. H. & Spormann, A. M. (2013). Dehalococcoides mccartyi gen. nov., sp. nov., obligately organohalide-respiring anaerobic bacteria relevant to halogen cycling and bioremediation, belong to a novel bacterial class, Dehalococcoidia classis nov., order Dehalococcoidales ord. nov. and family Dehalococcoidaceae fam. nov., within the phylum Chloroflexi. Int J Syst Evol Microbiol 63, 625-635.
-
(2013)
Int J Syst Evol Microbiol
, vol.63
, pp. 625-635
-
-
Löffler, F.E.1
Yan, J.2
Ritalahti, K.M.3
Adrian, L.4
Edwards, E.A.5
Konstantinidis, K.T.6
Müller, J.A.7
Fullerton, H.8
Zinder, S.H.9
Spormann, A.M.10
-
25
-
-
84871159722
-
Dehalogenimonas spp. can reductively dehalogenate high concentrations of 1,2-dichloroethane, 1,2-dichloropropane, and 1,1,2-trichloroethane
-
Maness, A. D., Bowman, K. S., Yan, J., Rainey, F. A. & Moe, W. M. (2012). Dehalogenimonas spp. can reductively dehalogenate high concentrations of 1,2-dichloroethane, 1,2-dichloropropane, and 1,1,2-trichloroethane. AMB Express 2, 54.
-
(2012)
AMB Express
, vol.2
, pp. 54
-
-
Maness, A.D.1
Bowman, K.S.2
Yan, J.3
Rainey, F.A.4
Moe, W.M.5
-
26
-
-
73649122427
-
Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides
-
McMurdie, P. J., Behrens, S. F., Müller, J. A., Göke, J., Ritalahti, K. M., Wagner, R., Goltsman, E., Lapidus, A., Holmes, S. & other authors (2009). Localized plasticity in the streamlined genomes of vinyl chloride respiring Dehalococcoides. PLoS Genet 5, e1000714.
-
(2009)
PLoS Genet
, vol.5
-
-
McMurdie, P.J.1
Behrens, S.F.2
Müller, J.A.3
Göke, J.4
Ritalahti, K.M.5
Wagner, R.6
Goltsman, E.7
Lapidus, A.8
Holmes, S.9
-
27
-
-
70450277146
-
Dehalogenimonas lykanthroporepellens gen. nov., sp. nov., a reductively dehalogenating bacterium isolated from chlorinated solvent-contaminated groundwater
-
Moe, W. M., Yan, J., Nobre, M. F., da Costa, M. S. & Rainey, F. A. (2009). Dehalogenimonas lykanthroporepellens gen. nov., sp. nov., a reductively dehalogenating bacterium isolated from chlorinated solvent-contaminated groundwater. Int J Syst Evol Microbiol 59, 2692-2697.
-
(2009)
Int J Syst Evol Microbiol
, vol.59
, pp. 2692-2697
-
-
Moe, W.M.1
Yan, J.2
Nobre, M.F.3
da Costa, M.S.4
Rainey, F.A.5
-
28
-
-
84893518970
-
Conserved signature indels and signature proteins as novel tools for understanding microbial phylogeny and systematics: Identification of molecular signatures that are specific for the phytopathogenic genera Dickeya, Pectobacterium and Brenneria
-
Naushad, H. S., Lee, B. & Gupta, R. S. (2014). Conserved signature indels and signature proteins as novel tools for understanding microbial phylogeny and systematics: identification of molecular signatures that are specific for the phytopathogenic genera Dickeya, Pectobacterium and Brenneria. Int J Syst Evol Microbiol 64, 366-383.
-
(2014)
Int J Syst Evol Microbiol
, vol.64
, pp. 366-383
-
-
Naushad, H.S.1
Lee, B.2
Gupta, R.S.3
-
30
-
-
84878383709
-
Genome sequences of two dehalogenation specialists-Dehalococcoides mccartyi strains BTF08 and DCMB5 enriched from the highly polluted Bitterfeld region
-
Pöritz, M., Goris, T., Wubet, T., Tarkka, M. T., Buscot, F., Nijenhuis, I., Lechner, U. & Adrian, L. (2013). Genome sequences of two dehalogenation specialists-Dehalococcoides mccartyi strains BTF08 and DCMB5 enriched from the highly polluted Bitterfeld region. FEMS Microbiol Lett 343, 101-104.
-
(2013)
FEMS Microbiol Lett
, vol.343
, pp. 101-104
-
-
Pöritz, M.1
Goris, T.2
Wubet, T.3
Tarkka, M.T.4
Buscot, F.5
Nijenhuis, I.6
Lechner, U.7
Adrian, L.8
-
31
-
-
78649879246
-
A domain insertion in Escherichia coli GyrB adopts a novel fold that plays a critical role in gyrase function
-
Schoeffler, A. J., May, A. P. & Berger, J. M. (2010). A domain insertion in Escherichia coli GyrB adopts a novel fold that plays a critical role in gyrase function. Nucleic Acids Res 38, 7830-7844.
-
(2010)
Nucleic Acids Res
, vol.38
, pp. 7830-7844
-
-
Schoeffler, A.J.1
May, A.P.2
Berger, J.M.3
-
32
-
-
19944426081
-
Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes
-
Seshadri, R., Adrian, L., Fouts, D. E., Eisen, J. A., Phillippy, A. M., Methe, B. A., Ward, N. L., Nelson, W. C., Deboy, R. T. & other authors (2005). Genome sequence of the PCE-dechlorinating bacterium Dehalococcoides ethenogenes. Science 307, 105-108.
-
(2005)
Science
, vol.307
, pp. 105-108
-
-
Seshadri, R.1
Adrian, L.2
Fouts, D.E.3
Eisen, J.A.4
Phillippy, A.M.5
Methe, B.A.6
Ward, N.L.7
Nelson, W.C.8
Deboy, R.T.9
-
33
-
-
84863564535
-
T) and comparison to 'Dehalococcoides' strains
-
T) and comparison to "Dehalococcoides" strains. Stand Genomic Sci 6, 251-264.
-
(2012)
Stand Genomic Sci
, vol.6
, pp. 251-264
-
-
Siddaramappa, S.1
Challacombe, J.F.2
Delano, S.F.3
Green, L.D.4
Daligault, H.5
Bruce, D.6
Detter, C.7
Tapia, R.8
Han, S.9
-
34
-
-
66149157930
-
Conserved inserts in the Hsp60 (GroEL) and Hsp70 (DnaK) proteins are essential for cellular growth
-
Singh, B. & Gupta, R. S. (2009). Conserved inserts in the Hsp60 (GroEL) and Hsp70 (DnaK) proteins are essential for cellular growth. Mol Genet Genomics 281, 361-373.
-
(2009)
Mol Genet Genomics
, vol.281
, pp. 361-373
-
-
Singh, B.1
Gupta, R.S.2
-
35
-
-
9244251590
-
Anaerobic microbial dehalogenation
-
Smidt, H. & de Vos, W. M. (2004). Anaerobic microbial dehalogenation. Annu Rev Microbiol 58, 43-73.
-
(2004)
Annu Rev Microbiol
, vol.58
, pp. 43-73
-
-
Smidt, H.1
de Vos, W.M.2
-
36
-
-
72949111410
-
Detection and quantification of Dehalogenimonas and 'Dehalococcoides' populations via PCR-based protocols targeting 16S rRNA genes
-
Yan, J., Rash, B. A., Rainey, F. A. & Moe, W. M. (2009). Detection and quantification of Dehalogenimonas and "Dehalococcoides" populations via PCR-based protocols targeting 16S rRNA genes. Appl Environ Microbiol 75, 7560-7564.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7560-7564
-
-
Yan, J.1
Rash, B.A.2
Rainey, F.A.3
Moe, W.M.4
|