The correlation of single-particle diffraction patterns as a continuous function of particle orientation

Philosophical Transactions of the Royal Society B: Biological Sciences

Volumn 369, Issue 1647, 2014, Pages

  Martin, Andrew V ^a  

^a UNIVERSITY OF MELBOURNE   (Australia)

Author keywords

Coherent diffractive imaging; X ray diffraction; X ray free electron laser

Indexed keywords

CORRELATION; DIFFRACTION; IMAGING METHOD; LIGHT SCATTERING; NUMERICAL MODEL; ORIENTATION; STATISTICAL ANALYSIS;

CONFORMATION; ELECTRON; LASER; POISSON DISTRIBUTION; PROCEDURES; RADIATION SCATTERING; SIGNAL NOISE RATIO; THEORETICAL MODEL; X RAY DIFFRACTION;

ELECTRONS; LASERS; MODELS, THEORETICAL; MOLECULAR CONFORMATION; POISSON DISTRIBUTION; SCATTERING, RADIATION; SIGNAL-TO-NOISE RATIO; X-RAY DIFFRACTION;

EID: 84902665813     PISSN: 09628436     EISSN: 14712970     Source Type: Journal    
DOI: 10.1098/rstb.2013.0329     Document Type: Article

References (17)

1. Neutze R, Wouts W, van der Spoel D, Weckert E, Hajdu J. 2000 Potential for biomolecular imaging with femtosecond X-ray pulses. Nature 406, 752-757. (doi: 10. 1038/35021099).
2. Seibert MM et al. 2011 Single mimivirus particles intercepted and imaged with an X-ray laser. Nature 470, 78-81. (doi: 10. 1038/nature09748).
3. Ishikawa T et al. 2012 A compact X-ray free-electron laser emitting in the sub-ångström region. Nat. Photon. 6, 540-544. (doi: 10. 1038/nphoton. 2012. 141).
4. Emma P et al. 2010 First lasing and operation of an Ångstrom-wavelength free-electron laser. Nat. Photon. 4, 641-647. (doi: 10. 1038/nphoton. 2010. 176).
5. European XFEL. See http://www. xfel. eu.
6. Huldt G, Szoke A, Hajdu JJ. 2003 Diffraction imaging of single particles and biomolecules. J. Struct. Biol. 144, 219-227. (doi: 10. 1016/j. jsb. 2003. 09. 025).
7. Loh NTD, Elser V. 2009 Reconstruction algorithm for single-particle diffraction imaging experiments. Phys. Rev. E 80, 026705. (doi: 10. 1103/PhysRevE. 80. 026705).
8. Fung R, Shneerson V, Saldin DK, Ourmazd A. 2009 Structure from fleeting illumination of faint spinning objects in flight. Nat. Phys. 5, 64-67. (doi: 10. 1038/nphys1129).
9. Giannakis D, Schwander P, Ourmazd A. 2012 The symmetries of image formation by scattering. I. Theoretical framework. Opt. Express. 20, 12 799-12 826. (doi: 10. 1364/OE. 20. 012799).
10. Schwander P, Giannakis D, Yoon CH, Ourmazd A. 2012 The symmetries of image formation by scattering. II. Applications. Opt. Express. 20, 12 827-12 849. (doi: 10. 1364/OE. 20. 012827).
11. Kassemeyer S, Jafarpour A, Lomb L, Steinbrener J, Martin AV, Schlichting I. 2013 Optimal mapping of X-ray laser diffraction patterns into three dimensions using routing algorithms. Phys. Rev. E 88, 042710. (doi: 10. 1103/PhysRevE. 88. 042710).
12. Bortel G, Faigel G, Tegze M. 2009 Classification and averaging of random orientation single macromolecular diffraction patterns at atomic resolution. J. Struct. Biol. 166, 226-233. (doi: 10. 1016/j. jsb. 2009. 01. 005).
13. Bortel G, Tegze M. 2011 Common arc method for diffraction pattern orientation. Acta Crystallogr. A 67, 533-543. (doi: 10. 1107/S0108767311036269).
14. Tegze M, Bortel G. 2012 Atomic structure of a large biomolecule from diffraction patterns of random orientations. J. Struct. Biol. 179, 41-45. (doi: 10. 1016/j. jsb. 2012. 04. 014).
15. Loh ND et al. 2010 Cryptotomography: reconstructing 3D Fourier intensities from randomly oriented single-shot diffraction patterns. Phys. Rev. Lett. 104, 225501. (doi: 10. 1103/PhysRevLett. 104. 225501).
16. Shmueli U, Wilson AJC. 2006 International tables for crystallography, vol. B, ch. 2. 1. 5. IUCR.
17. Ziaja B, Martin AV, Wang F, Chapman HN, Weckert E. 2011 Theoretical estimation for correlations of diffraction patterns from objects differently oriented in space. Ultramicroscopy 111, 793-797. (doi: 10. 1016/j. ultramic. 2010. 12. 021).