-
1
-
-
0025183708
-
Basic local alignment search tool
-
Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ. 1990. Basic local alignment search tool. J. Mol. Biol. 215: 403-410
-
(1990)
J. Mol. Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
2
-
-
50949131523
-
Comparative analysis of human gut microbiota by barcoded pyrosequencing
-
Andersson AF, Lindberg M, Jakobsson H, Backhed F, Nyren P, Engstrand L. 2008. Comparative analysis of human gut microbiota by barcoded pyrosequencing. PLoS One 3: e2836
-
(2008)
PLoS One
, vol.3
-
-
Andersson, A.F.1
Lindberg, M.2
Jakobsson, H.3
Backhed, F.4
Nyren, P.5
Engstrand, L.6
-
3
-
-
80053651587
-
-
Benson D A, Cavanaugh M, Clark K, Karsch-Mizrachi I, Lipman DJ, Ostell J, Sayers EW. 2013. GenBank. Nucleic Acids Res. 41: D36-D42
-
(2013)
GenBank. Nucleic Acids Res
, vol.41
-
-
Benson, D.A.1
Cavanaugh, M.2
Clark, K.3
Karsch-Mizrachi, I.4
Lipman, D.J.5
Ostell, J.6
Sayers, E.W.7
-
4
-
-
0031126531
-
The intestinal microflora during the first weeks of life
-
Bezirtzoglou E. 1997. The intestinal microflora during the first weeks of life. Anaerobe 3: 173-177
-
(1997)
Anaerobe
, vol.3
, pp. 173-177
-
-
Bezirtzoglou, E.1
-
5
-
-
0017165664
-
Bifidobacteria in the intestinal tract of infants: An in-vivo study
-
Bullen C, Tearle P, Willis A. 1976. Bifidobacteria in the intestinal tract of infants: an in-vivo study. J. Med. Microbiol. 9: 325-333
-
(1976)
J. Med. Microbiol
, vol.9
, pp. 325-333
-
-
Bullen, C.1
Tearle, P.2
Willis, A.3
-
6
-
-
84891787231
-
Ribosomal Database Project: Data and tools for high throughput rRNA analysis
-
Cole JR, Wang Q, Fish JA, Chai B, McGarrell DM, Sun Y, et al. 2014. Ribosomal Database Project: data and tools for high throughput rRNA analysis. Nucleic Acids Res. 42: D633-D642
-
(2014)
Nucleic Acids Res
, vol.42
-
-
Cole, J.R.1
Wang, Q.2
Fish, J.A.3
Chai, B.4
McGarrell, D.M.5
Sun, Y.6
-
7
-
-
77955386857
-
Delivery mode shapes the acquisition and structure of the initial microbiota acrossmultiple body habitats in newborns
-
Dominguez-Bello MG, Costello EK, Contreras M, Magris M, Hidalgo G, Fierer N, Knight R. 2010. Delivery mode shapes the acquisition and structure of the initial microbiota acrossmultiple body habitats in newborns. Proc. Natl. Acad. Sci. USA 107: 11971-11975
-
(2010)
Proc. Natl. Acad. Sci. USA
, vol.107
, pp. 11971-11975
-
-
Dominguez-Bello, M.G.1
Costello, E.K.2
Contreras, M.3
Magris, M.4
Hidalgo, G.5
Fierer, N.6
Knight, R.7
-
8
-
-
33947694822
-
Cultivable bacterial diversity from the human colon
-
Duncan S, Louis P, Flint H. 2007. Cultivable bacterial diversity from the human colon. Lett. Appl. Microbiol. 44: 343-350
-
(2007)
Lett. Appl. Microbiol
, vol.44
, pp. 343-350
-
-
Duncan, S.1
Louis, P.2
Flint, H.3
-
9
-
-
20544444045
-
Diversity of the human intestinal microbial flora
-
Eckburg PB, Bik EM, Bernstein CN, Purdom E, Dethlefsen L, Sargent M, et al. 2005. Diversity of the human intestinal microbial flora. Science 308: 1635-1638
-
(2005)
Science
, vol.308
, pp. 1635-1638
-
-
Eckburg, P.B.1
Bik, E.M.2
Bernstein, C.N.3
Purdom, E.4
Dethlefsen, L.5
Sargent, M.6
-
10
-
-
84887316790
-
Diversity of the intestinal microbiota in different patterns of feeding infants by Illumina high-throughput sequencing
-
Fan W, Huo G, Li X, Yang L, Duan C, Wang T, Chen J. 2013. Diversity of the intestinal microbiota in different patterns of feeding infants by Illumina high-throughput sequencing. World J. Microbiol. Biotechnol. 29: 2365-2372
-
(2013)
World J. Microbiol. Biotechnol
, vol.29
, pp. 2365-2372
-
-
Fan, W.1
Huo, G.2
Li, X.3
Yang, L.4
Duan, C.5
Wang, T.6
Chen, J.7
-
11
-
-
0021987421
-
Pasteurized milk as a vehicle of infection in an outbreak of listeriosis
-
Fleming DW, Cochi SL, MacDonald KL, Brondum J, Hayes PS, Plikaytis BD, et al. 1985. Pasteurized milk as a vehicle of infection in an outbreak of listeriosis. N. Engl. J. Med. 312: 404-407
-
(1985)
N. Engl. J. Med
, vol.312
, pp. 404-407
-
-
Fleming, D.W.1
Cochi, S.L.2
Macdonald, K.L.3
Brondum, J.4
Hayes, P.S.5
Plikaytis, B.D.6
-
12
-
-
0020600404
-
Plasmid complements of Streptococcus lactis NCDO 712 and other lactic streptococci after protoplastinduced curing
-
Gasson MJ. 1983. Plasmid complements of Streptococcus lactis NCDO 712 and other lactic streptococci after protoplastinduced curing. J. Bacteriol. 154: 1-9
-
(1983)
J. Bacteriol
, vol.154
, pp. 1-9
-
-
Gasson, M.J.1
-
13
-
-
33744804299
-
Metagenomic analysis of the human distal gut microbiome
-
Gill S R, Pop M, DeBoy R T, Eckburg PB, Turnbaugh P J, Samuel BS, et al. 2006. Metagenomic analysis of the human distal gut microbiome. Science 312: 1355-1359
-
(2006)
Science
, vol.312
, pp. 1355-1359
-
-
Gill, S.R.1
Pop, M.2
Deboy, R.T.3
Eckburg, P.B.4
Turnbaugh, P.J.5
Samuel, B.S.6
-
14
-
-
84879381740
-
D iagnostic applications of next generation sequencing in immunogenetics and molecular oncology
-
Grumbt B, Eck S, Hinrichsen T, Hirv K. 2013. D iagnostic applications of next generation sequencing in immunogenetics and molecular oncology. Transfus. Med. Hemother. 40: 196-206
-
(2013)
Transfus. Med. Hemother
, vol.40
, pp. 196-206
-
-
Grumbt, B.1
Eck, S.2
Hinrichsen, T.3
Hirv, K.4
-
15
-
-
0037425743
-
Gut flora in health and disease
-
Guarner F, Malagelada JR. 2003. Gut flora in health and disease. Lancet 361: 512-519
-
(2003)
Lancet
, vol.361
, pp. 512-519
-
-
Guarner, F.1
Malagelada, J.R.2
-
16
-
-
0019407618
-
Aromatic-dependent Salmonella Typhimurium are non-virulent and effective as live vaccines
-
Hoiseth SK, Stocker B. 1981. Aromatic-dependent Salmonella Typhimurium are non-virulent and effective as live vaccines. Nature 291: 238-239
-
(1981)
Nature
, vol.291
, pp. 238-239
-
-
Hoiseth, S.K.1
Stocker, B.2
-
17
-
-
0032568620
-
Overview of gut flora and probiotics
-
Holzapfel WH, Haberer P, Snel J, Schillinger U, Huis in't Veld JH. 1998. Overview of gut flora and probiotics. Int. J. Food Microbiol. 41: 85-101
-
(1998)
Int. J. Food Microbiol
, vol.41
, pp. 85-101
-
-
Holzapfel, W.H.1
Haberer, P.2
Snel, J.3
Schillinger, U.4
Huis, V.J.H.5
-
18
-
-
77649086402
-
Immune adaptations that maintain homeostasis with the intestinal microbiota
-
Hooper LV, Macpherson AJ. 2010. Immune adaptations that maintain homeostasis with the intestinal microbiota. Nat. Rev. Immunol. 10: 159-169
-
(2010)
Nat. Rev. Immunol
, vol.10
, pp. 159-169
-
-
Hooper, L.V.1
Macpherson, A.J.2
-
19
-
-
57149093416
-
Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing
-
Huse SM, Dethlefsen L, Huber JA, Welch DM, Relman DA, Sogin ML. 2008. Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing. PLoS Genetics 4: e1000255
-
(2008)
PLoS Genetics
, vol.4
-
-
Huse, S.M.1
Dethlefsen, L.2
Huber, J.A.3
Welch, D.M.4
Relman, D.A.5
Sogin, M.L.6
-
20
-
-
79952763661
-
Succession of microbial consortia in the developing infant gut microbiome
-
Koenig JE, Spor A, Scalfone N, Fricker AD, Stombaugh J, Knight R, et al. 2011. Succession of microbial consortia in the developing infant gut microbiome. Proc. Natl. Acad. Sci. USA 108: 4578-4585
-
(2011)
Proc. Natl. Acad. Sci. USA
, vol.108
, pp. 4578-4585
-
-
Koenig, J.E.1
Spor, A.2
Scalfone, N.3
Fricker, A.D.4
Stombaugh, J.5
Knight, R.6
-
21
-
-
36448991500
-
Clustal W and Clustal X version 2.0
-
Larkin MA, Blackshields G, Brown NP, Chenna R, McGettigan PA, McWilliam H, et al. 2007. Clustal W and Clustal X version 2.0. Bioinformatics 23: 2947-2948
-
(2007)
Bioinformatics
, vol.23
, pp. 2947-2948
-
-
Larkin, M.A.1
Blackshields, G.2
Brown, N.P.3
Chenna, R.4
McGettigan, P.A.5
McWilliam, H.6
-
23
-
-
84875851340
-
Development of intestinal microbiota in infants and its impact on health
-
Matamoros S, Gras-Leguen C, Le Vacon F, Potel G, de La Cochetiere M-F. 2013. Development of intestinal microbiota in infants and its impact on health. Trends Microbiol. 21: 167-173
-
(2013)
Trends Microbiol
, vol.21
, pp. 167-173
-
-
Matamoros, S.1
Gras-Leguen, C.2
Le, V.F.3
Potel, G.4
de La, C.M.-F.5
-
24
-
-
0036242883
-
A comparison o f five methods for extraction of bacterial DNA from human faecal samples
-
McOrist A L, Jackson M, Bird AR. 2002. A comparison o f five methods for extraction of bacterial DNA from human faecal samples. J. Microbiol. Methods 50: 131-139
-
(2002)
J. Microbiol. Methods
, vol.50
, pp. 131-139
-
-
McOrist, A.L.1
Jackson, M.2
Bird, A.R.3
-
25
-
-
84876212011
-
Enhanced de novo assembly of high throughput pyrosequencing data using whole genome mapping
-
Onmus-Leone F, Hang J, Clifford RJ, Yang Y, Riley MC, Kuschner RA, et al. 2013. Enhanced de novo assembly of high throughput pyrosequencing data using whole genome mapping. PloS One 8: e61762
-
(2013)
PloS One
, vol.8
-
-
Onmus-Leone, F.1
Hang, J.2
Clifford, R.J.3
Yang, Y.4
Riley, M.C.5
Kuschner, R.A.6
-
26
-
-
34547129847
-
Development of the human infant intestinal microbiota
-
Palmer C, Bik EM, DiGiulio DB, Relman DA, and Brown PO. 2007. Development of the human infant intestinal microbiota. PLoS Biol. 5: e177
-
(2007)
PLoS Biol
, vol.5
-
-
Palmer, C.1
Bik, E.M.2
Digiulio, D.B.3
Relman, D.A.4
Brown, P.O.5
-
27
-
-
33748415364
-
Factors influencing the composition of the intestinal microbiota in early infancy
-
Penders J, Thijs C, Vink C, Stelma FF, Snijders B, Kummeling I, et al. 2006. Factors influencing the composition of the intestinal microbiota in early infancy. Pediatrics 118: 511-521
-
(2006)
Pediatrics
, vol.118
, pp. 511-521
-
-
Penders, J.1
Thijs, C.2
Vink, C.3
Stelma, F.F.4
Snijders, B.5
Kummeling, I.6
-
28
-
-
77950251400
-
A human gut microbial gene catalogue established by metagenomic sequencing
-
Qin J, Li R, Raes J, Arumugam M, Burgdorf KS, Manichanh C, et al. 2010. A human gut microbial gene catalogue established by metagenomic sequencing. Nature 464: 59-65
-
(2010)
Nature
, vol.464
, pp. 59-65
-
-
Qin, J.1
Li, R.2
Raes, J.3
Arumugam, M.4
Burgdorf, K.S.5
Manichanh, C.6
-
30
-
-
84859625932
-
Nextgeneration sequencing technologies for environmental DNA research
-
Shokralla S, Spall JL, Gibson JF, Hajibabaei M. 2012. Nextgeneration sequencing technologies for environmental DNA research. Mol. Ecol. 21: 1794-1805
-
(2012)
Mol. Ecol
, vol.21
, pp. 1794-1805
-
-
Shokralla, S.1
Spall, J.L.2
Gibson, J.F.3
Hajibabaei, M.4
-
31
-
-
58749112734
-
A core gut microbiome in obese and lean twins
-
Turnbaugh PJ, Hamady M, Yatsunenko T, Cantarel BL, Duncan A, Ley R E, et al. 2009. A core gut microbiome in obese and lean twins. Nature 457: 480-484
-
(2009)
Nature
, vol.457
, pp. 480-484
-
-
Turnbaugh, P.J.1
Hamady, M.2
Yatsunenko, T.3
Cantarel, B.L.4
Duncan, A.5
Ley, R.E.6
-
32
-
-
84861011960
-
Diversity of bifidobacteria within the infant gut microbiota
-
Turroni F, Peano C, Pass DA, Foroni E, Severgnini M, Claesson MJ, et al. 2012. Diversity of bifidobacteria within the infant gut microbiota. PLoS One 7: e36957
-
(2012)
PLoS One
, vol.7
-
-
Turroni, F.1
Peano, C.2
Pass, D.A.3
Foroni, E.4
Severgnini, M.5
Claesson, M.J.6
-
33
-
-
0020562186
-
D evelopment a nd differences of intestinal flora in the neonatal period in breast-fed and bottle-fed infants
-
Yoshioka H, Iseki K, Fujita K. 1983. D evelopment a nd differences of intestinal flora in the neonatal period in breast-fed and bottle-fed infants. Pediatrics 72: 317-321
-
(1983)
Pediatrics
, vol.72
, pp. 317-321
-
-
Yoshioka, H.1
Iseki, K.2
Fujita, K.3
-
34
-
-
2442510059
-
Improved extraction of PCRquality community DNA from digesta and fecal samples
-
Yu Z, Morrison M. 2004. Improved extraction of PCRquality community DNA from digesta and fecal samples. Biotechniques 36: 808-813.
-
(2004)
Biotechniques
, vol.36
, pp. 808-813
-
-
Yu, Z.1
Morrison, M.2
|