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Volumn 15, Issue 1, 2014, Pages

Gene co-expression network analysis identifies porcine genes associated with variation in Salmonella shedding

Author keywords

[No Author keywords available]

Indexed keywords

CD14 ANTIGEN; CHEMOKINE RECEPTOR CCR1; NATURAL RESISTANCE ASSOCIATED MACROPHAGE PROTEIN 1; TOLL LIKE RECEPTOR 4;

EID: 84902549528     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-15-452     Document Type: Article
Times cited : (52)

References (55)
  • 1
    • 84902536857 scopus 로고    scopus 로고
    • The Merck veterinary manual online
    • The Merck veterinary manual online. [http://www.merckmanuals.com/vet/index.html].
  • 2
    • 46549088451 scopus 로고    scopus 로고
    • Non-typhoidal Salmonella infections in pigs: a closer look at epidemiology, pathogenesis and control
    • 10.1016/j.vetmic.2007.12.017, 18243591
    • Boyen F, Haesebrouck F, Maes D, Van Immerseel F, Ducatelle R, Pasmans F. Non-typhoidal Salmonella infections in pigs: a closer look at epidemiology, pathogenesis and control. Vet Microbiol 2008, 130:1-19. 10.1016/j.vetmic.2007.12.017, 18243591.
    • (2008) Vet Microbiol , vol.130 , pp. 1-19
    • Boyen, F.1    Haesebrouck, F.2    Maes, D.3    Van Immerseel, F.4    Ducatelle, R.5    Pasmans, F.6
  • 3
    • 84862765173 scopus 로고    scopus 로고
    • Shedding light on Salmonella carriers
    • 10.1016/j.tim.2012.04.004, 22591832
    • Gopinath S, Carden S, Monack D. Shedding light on Salmonella carriers. Trends Microbiol 2012, 20:320-327. 10.1016/j.tim.2012.04.004, 22591832.
    • (2012) Trends Microbiol , vol.20 , pp. 320-327
    • Gopinath, S.1    Carden, S.2    Monack, D.3
  • 4
    • 0041626906 scopus 로고    scopus 로고
    • Genetic regulation of host responses to Salmonella infection in mice
    • 10.1038/sj.gene.6363924, 12424619
    • Roy M-F, Malo D. Genetic regulation of host responses to Salmonella infection in mice. Genes Immun 2002, 3:381-393. 10.1038/sj.gene.6363924, 12424619.
    • (2002) Genes Immun , vol.3 , pp. 381-393
    • Roy, M.-F.1    Malo, D.2
  • 5
    • 77956396396 scopus 로고    scopus 로고
    • Genetic control of resistance to salmonellosis and to Salmonella carrier-state in fowl: a review
    • 10.1186/1297-9686-42-11, 2873309, 20429884
    • Calenge F, Kaiser P, Vignal A, Beaumont C. Genetic control of resistance to salmonellosis and to Salmonella carrier-state in fowl: a review. Genet Sel Evol 2010, 42:11. 10.1186/1297-9686-42-11, 2873309, 20429884.
    • (2010) Genet Sel Evol , vol.42 , pp. 11
    • Calenge, F.1    Kaiser, P.2    Vignal, A.3    Beaumont, C.4
  • 6
    • 0036753735 scopus 로고    scopus 로고
    • In vivo and in vitro studies of genetic resistance to systemic salmonellosis in the chicken encoded by the SAL1 locus
    • 10.1016/S1286-4579(02)01635-0, 12361910
    • Wigley P, Hulme SD, Bumstead N, Barrow PA. In vivo and in vitro studies of genetic resistance to systemic salmonellosis in the chicken encoded by the SAL1 locus. Microbes Infect 2002, 4:1111-1120. 10.1016/S1286-4579(02)01635-0, 12361910.
    • (2002) Microbes Infect , vol.4 , pp. 1111-1120
    • Wigley, P.1    Hulme, S.D.2    Bumstead, N.3    Barrow, P.A.4
  • 7
    • 1842636933 scopus 로고    scopus 로고
    • Genetic resistance to Salmonella infection in domestic animals
    • 10.1016/S0034-5288(03)00117-6, 15046948
    • Wigley P. Genetic resistance to Salmonella infection in domestic animals. Res Vet Sci 2004, 76:165-169. 10.1016/S0034-5288(03)00117-6, 15046948.
    • (2004) Res Vet Sci , vol.76 , pp. 165-169
    • Wigley, P.1
  • 8
    • 33646935197 scopus 로고    scopus 로고
    • Analyses of Five gallinacin genes and the Salmonella enterica serovar Enteritidis response in poultry
    • 10.1128/IAI.00027-06, 1479296, 16714567
    • Hasenstein JR, Zhang G, Lamont SJ. Analyses of Five gallinacin genes and the Salmonella enterica serovar Enteritidis response in poultry. Infect Immun 2006, 74:3375-3380. 10.1128/IAI.00027-06, 1479296, 16714567.
    • (2006) Infect Immun , vol.74 , pp. 3375-3380
    • Hasenstein, J.R.1    Zhang, G.2    Lamont, S.J.3
  • 9
    • 80055080763 scopus 로고    scopus 로고
    • Genetic diversity in cytokines associated with immune variation and resistance to multiple pathogens in a natural rodent population
    • 10.1371/journal.pgen.1002343, 3197692, 22039363
    • Turner AK, Begon M, Jackson JA, Bradley JE, Paterson S. Genetic diversity in cytokines associated with immune variation and resistance to multiple pathogens in a natural rodent population. PLoS Genet 2011, 7:e1002343. 10.1371/journal.pgen.1002343, 3197692, 22039363.
    • (2011) PLoS Genet , vol.7
    • Turner, A.K.1    Begon, M.2    Jackson, J.A.3    Bradley, J.E.4    Paterson, S.5
  • 10
    • 1642416091 scopus 로고    scopus 로고
    • Genetic basis of natural variation in D. melanogaster antibacterial immunity
    • 10.1126/science.1092447, 15031506
    • Lazzaro BP, Sceurman BK, Clark AG. Genetic basis of natural variation in D. melanogaster antibacterial immunity. Science 2004, 303:1873-1876. 10.1126/science.1092447, 15031506.
    • (2004) Science , vol.303 , pp. 1873-1876
    • Lazzaro, B.P.1    Sceurman, B.K.2    Clark, A.G.3
  • 11
    • 33646752538 scopus 로고    scopus 로고
    • Genetic variation in Drosophila melanogaster pathogen susceptibility
    • 1847563, 16497252
    • Tinsley MC, Blanford S, Jiggins FM. Genetic variation in Drosophila melanogaster pathogen susceptibility. Parasitology 2006, 132(Pt 6):767-773. 1847563, 16497252.
    • (2006) Parasitology , vol.132 , Issue.PART 6 , pp. 767-773
    • Tinsley, M.C.1    Blanford, S.2    Jiggins, F.M.3
  • 12
    • 61849139089 scopus 로고    scopus 로고
    • Correlating blood immune parameters and a CCT7 genetic variant with the shedding of Salmonella enterica serovar Typhimurium in swine
    • 10.1016/j.vetmic.2008.09.074, 18996651
    • Uthe JJ, Wang Y, Qu L, Nettleton D, Tuggle CK, Bearson SMD. Correlating blood immune parameters and a CCT7 genetic variant with the shedding of Salmonella enterica serovar Typhimurium in swine. Vet Microbiol 2009, 135:384-388. 10.1016/j.vetmic.2008.09.074, 18996651.
    • (2009) Vet Microbiol , vol.135 , pp. 384-388
    • Uthe, J.J.1    Wang, Y.2    Qu, L.3    Nettleton, D.4    Tuggle, C.K.5    Bearson, S.M.D.6
  • 13
    • 80052654800 scopus 로고    scopus 로고
    • Use of bioinformatic SNP predictions in differentially expressed genes to find SNPs associated with Salmonella colonization in swine
    • 10.1111/j.1439-0388.2011.00935.x, 21906181
    • Uthe JJ, Qu L, Couture O, Bearson SMD, O'Connor AM, McKean JD, Torres YR, Dekkers JCM, Nettleton D, Tuggle CK. Use of bioinformatic SNP predictions in differentially expressed genes to find SNPs associated with Salmonella colonization in swine. J Anim Breed Genet 2011, 128:354-365. 10.1111/j.1439-0388.2011.00935.x, 21906181.
    • (2011) J Anim Breed Genet , vol.128 , pp. 354-365
    • Uthe, J.J.1    Qu, L.2    Couture, O.3    Bearson, S.M.D.4    O'Connor, A.M.5    McKean, J.D.6    Torres, Y.R.7    Dekkers, J.C.M.8    Nettleton, D.9    Tuggle, C.K.10
  • 15
    • 84856387609 scopus 로고    scopus 로고
    • Deciphering the genetic architecture of variation in the immune response to Mycobacterium tuberculosis infection
    • 10.1073/pnas.1115761109, 3268270, 22233810
    • Barreiro LB, Tailleux L, Pai AA, Gicquel B, Marioni JC, Gilad Y. Deciphering the genetic architecture of variation in the immune response to Mycobacterium tuberculosis infection. Proc Natl Acad Sci U S A 2012, 109:1204-1209. 10.1073/pnas.1115761109, 3268270, 22233810.
    • (2012) Proc Natl Acad Sci U S A , vol.109 , pp. 1204-1209
    • Barreiro, L.B.1    Tailleux, L.2    Pai, A.A.3    Gicquel, B.4    Marioni, J.C.5    Gilad, Y.6
  • 16
    • 84876179813 scopus 로고    scopus 로고
    • Characterizing differential individual response to porcine reproductive and respiratory syndrome virus infection through statistical and functional analysis of gene expression
    • 3546301, 23335940
    • Arceo ME, Ernst CW, Lunney JK, Choi I, Raney NE, Huang T, Tuggle CK, Rowland RRR, Steibel JP. Characterizing differential individual response to porcine reproductive and respiratory syndrome virus infection through statistical and functional analysis of gene expression. Front Genet 2012, 3:321. 3546301, 23335940.
    • (2012) Front Genet , vol.3 , pp. 321
    • Arceo, M.E.1    Ernst, C.W.2    Lunney, J.K.3    Choi, I.4    Raney, N.E.5    Huang, T.6    Tuggle, C.K.7    Rowland, R.R.R.8    Steibel, J.P.9
  • 17
    • 78649332579 scopus 로고    scopus 로고
    • Genetic control of host resistance to porcine reproductive and respiratory syndrome virus (PRRSV) infection
    • 10.1016/j.virusres.2010.08.004, 20709118
    • Lunney JK, Chen H. Genetic control of host resistance to porcine reproductive and respiratory syndrome virus (PRRSV) infection. Virus Res 2010, 154:161-169. 10.1016/j.virusres.2010.08.004, 20709118.
    • (2010) Virus Res , vol.154 , pp. 161-169
    • Lunney, J.K.1    Chen, H.2
  • 18
    • 77954384233 scopus 로고    scopus 로고
    • Assessing the human immune system through blood transcriptomics
    • 10.1186/1741-7007-8-84, 2895587, 20619006
    • Chaussabel D, Pascual V, Banchereau J. Assessing the human immune system through blood transcriptomics. BMC Biol 2010, 8:84. 10.1186/1741-7007-8-84, 2895587, 20619006.
    • (2010) BMC Biol , vol.8 , pp. 84
    • Chaussabel, D.1    Pascual, V.2    Banchereau, J.3
  • 19
    • 84890281268 scopus 로고    scopus 로고
    • The peripheral blood transcriptome reflects variations in immunity traits in swine: towards the identification of biomarkers
    • 10.1186/1471-2164-14-894, 3878494, 24341289
    • Mach N, Gao Y, Lemonnier G, Lecardonnel J, Oswald IP, Estellé J, Rogel-Gaillard C. The peripheral blood transcriptome reflects variations in immunity traits in swine: towards the identification of biomarkers. BMC Genomics 2013, 14:894. 10.1186/1471-2164-14-894, 3878494, 24341289.
    • (2013) BMC Genomics , vol.14 , pp. 894
    • Mach, N.1    Gao, Y.2    Lemonnier, G.3    Lecardonnel, J.4    Oswald, I.P.5    Estellé, J.6    Rogel-Gaillard, C.7
  • 20
    • 83155167595 scopus 로고    scopus 로고
    • Distinct peripheral blood RNA responses to Salmonella in pigs differing in Salmonella shedding levels: intersection of IFNG, TLR and miRNA pathways
    • 10.1371/journal.pone.0028768, 3236216, 22174891
    • Huang T-H, Uthe JJ, Bearson SMD, Demirkale CY, Nettleton D, Knetter S, Christian C, Ramer-Tait AE, Wannemuehler MJ, Tuggle CK. Distinct peripheral blood RNA responses to Salmonella in pigs differing in Salmonella shedding levels: intersection of IFNG, TLR and miRNA pathways. PLoS One 2011, 6:e28768. 10.1371/journal.pone.0028768, 3236216, 22174891.
    • (2011) PLoS One , vol.6
    • Huang, T.-H.1    Uthe, J.J.2    Bearson, S.M.D.3    Demirkale, C.Y.4    Nettleton, D.5    Knetter, S.6    Christian, C.7    Ramer-Tait, A.E.8    Wannemuehler, M.J.9    Tuggle, C.K.10
  • 21
    • 60549111634 scopus 로고    scopus 로고
    • WGCNA: an R package for weighted correlation network analysis
    • 10.1186/1471-2105-9-559, 2631488, 19114008
    • Langfelder P, Horvath S. WGCNA: an R package for weighted correlation network analysis. BMC Bioinformatics 2008, 9:559. 10.1186/1471-2105-9-559, 2631488, 19114008.
    • (2008) BMC Bioinformatics , vol.9 , pp. 559
    • Langfelder, P.1    Horvath, S.2
  • 22
    • 34548442971 scopus 로고    scopus 로고
    • Weighted gene coexpression network analysis strategies applied to mouse weight
    • 10.1007/s00335-007-9043-3, 1998880, 17668265
    • Fuller TF, Ghazalpour A, Aten JE, Drake TA, Lusis AJ, Horvath S. Weighted gene coexpression network analysis strategies applied to mouse weight. Mamm Genome 2007, 18:463-472. 10.1007/s00335-007-9043-3, 1998880, 17668265.
    • (2007) Mamm Genome , vol.18 , pp. 463-472
    • Fuller, T.F.1    Ghazalpour, A.2    Aten, J.E.3    Drake, T.A.4    Lusis, A.J.5    Horvath, S.6
  • 23
    • 84875494295 scopus 로고    scopus 로고
    • Gene coexpression network analysis identifies genes and biological processes shared among anterior pituitary and brain areas that affect estrous behavior in dairy cows
    • 10.3168/jds.2012-5814, 23375972
    • Kommadath A, Te Pas MFW, Smits MA. Gene coexpression network analysis identifies genes and biological processes shared among anterior pituitary and brain areas that affect estrous behavior in dairy cows. J Dairy Sci 2013, 96:2583-2595. 10.3168/jds.2012-5814, 23375972.
    • (2013) J Dairy Sci , vol.96 , pp. 2583-2595
    • Kommadath, A.1    Te Pas, M.F.W.2    Smits, M.A.3
  • 26
    • 79551545346 scopus 로고    scopus 로고
    • Is my network module preserved and reproducible?
    • 10.1371/journal.pcbi.1001057, 3024255, 21283776
    • Langfelder P, Luo R, Oldham MC, Horvath S. Is my network module preserved and reproducible?. PLoS Comput Biol 2011, 7:e1001057. 10.1371/journal.pcbi.1001057, 3024255, 21283776.
    • (2011) PLoS Comput Biol , vol.7
    • Langfelder, P.1    Luo, R.2    Oldham, M.C.3    Horvath, S.4
  • 27
    • 33947101372 scopus 로고    scopus 로고
    • Porcine differential gene expression in response to Salmonella enterica serovars Choleraesuis and Typhimurium
    • 10.1016/j.molimm.2007.01.016, 17337057
    • Uthe JJ, Royaee A, Lunney JK, Stabel TJ, Zhao S-H, Tuggle CK, Bearson SMD. Porcine differential gene expression in response to Salmonella enterica serovars Choleraesuis and Typhimurium. Mol Immunol 2007, 44:2900-2914. 10.1016/j.molimm.2007.01.016, 17337057.
    • (2007) Mol Immunol , vol.44 , pp. 2900-2914
    • Uthe, J.J.1    Royaee, A.2    Lunney, J.K.3    Stabel, T.J.4    Zhao, S.-H.5    Tuggle, C.K.6    Bearson, S.M.D.7
  • 28
    • 70449380492 scopus 로고    scopus 로고
    • Mapping markers linked to porcine salmonellosis susceptibility
    • 10.1111/j.1365-2052.2009.01916.x, 19496771
    • Galina-Pantoja L, Siggens K, Van Schriek MGM, Heuven HCM. Mapping markers linked to porcine salmonellosis susceptibility. Anim Genet 2009, 40:795-803. 10.1111/j.1365-2052.2009.01916.x, 19496771.
    • (2009) Anim Genet , vol.40 , pp. 795-803
    • Galina-Pantoja, L.1    Siggens, K.2    Van Schriek, M.G.M.3    Heuven, H.C.M.4
  • 29
    • 0031820381 scopus 로고    scopus 로고
    • Macrophage NRAMP1 and its role in resistance to microbial infections
    • 10.1007/s000110050330, 9719491
    • Govoni G, Gros P. Macrophage NRAMP1 and its role in resistance to microbial infections. Inflamm Res 1998, 47:277-284. 10.1007/s000110050330, 9719491.
    • (1998) Inflamm Res , vol.47 , pp. 277-284
    • Govoni, G.1    Gros, P.2
  • 30
    • 80054902358 scopus 로고    scopus 로고
    • Innate immune control of Salmonella enterica serovar Typhimurium: mechanisms contributing to combating systemic Salmonella infection
    • 10.1159/000330771, 21912097
    • Wick MJ. Innate immune control of Salmonella enterica serovar Typhimurium: mechanisms contributing to combating systemic Salmonella infection. J Innate Immun 2011, 3:543-549. 10.1159/000330771, 21912097.
    • (2011) J Innate Immun , vol.3 , pp. 543-549
    • Wick, M.J.1
  • 31
    • 67650099148 scopus 로고    scopus 로고
    • Deletion polymorphism of SIGLEC14 and its functional implications
    • 10.1093/glycob/cwp052, 19369701
    • Yamanaka M, Kato Y, Angata T, Narimatsu H. Deletion polymorphism of SIGLEC14 and its functional implications. Glycobiology 2009, 19:841-846. 10.1093/glycob/cwp052, 19369701.
    • (2009) Glycobiology , vol.19 , pp. 841-846
    • Yamanaka, M.1    Kato, Y.2    Angata, T.3    Narimatsu, H.4
  • 32
    • 84876217807 scopus 로고    scopus 로고
    • When is hub gene selection better than standard meta-analysis?
    • 10.1371/journal.pone.0061505, 3629234, 23613865
    • Langfelder P, Mischel PS, Horvath S. When is hub gene selection better than standard meta-analysis?. PLoS One 2013, 8:e61505. 10.1371/journal.pone.0061505, 3629234, 23613865.
    • (2013) PLoS One , vol.8
    • Langfelder, P.1    Mischel, P.S.2    Horvath, S.3
  • 33
    • 33645221650 scopus 로고    scopus 로고
    • Gene connectivity, function, and sequence conservation: predictions from modular yeast co-expression networks
    • 10.1186/1471-2164-7-40, 1413526, 16515682
    • Carlson MRJ, Zhang B, Fang Z, Mischel PS, Horvath S, Nelson SF. Gene connectivity, function, and sequence conservation: predictions from modular yeast co-expression networks. BMC Genomics 2006, 7:40. 10.1186/1471-2164-7-40, 1413526, 16515682.
    • (2006) BMC Genomics , vol.7 , pp. 40
    • Carlson, M.R.J.1    Zhang, B.2    Fang, Z.3    Mischel, P.S.4    Horvath, S.5    Nelson, S.F.6
  • 34
    • 79957650605 scopus 로고    scopus 로고
    • Quantifying differential gene connectivity between disease states for objective identification of disease-relevant genes
    • 10.1186/1752-0509-5-89, 3128864, 21627793
    • Chu J, Lazarus R, Carey VJ, Raby BA. Quantifying differential gene connectivity between disease states for objective identification of disease-relevant genes. BMC Syst Biol 2011, 5:89. 10.1186/1752-0509-5-89, 3128864, 21627793.
    • (2011) BMC Syst Biol , vol.5 , pp. 89
    • Chu, J.1    Lazarus, R.2    Carey, V.J.3    Raby, B.A.4
  • 35
    • 74249118093 scopus 로고    scopus 로고
    • Aging mice show a decreasing correlation of gene expression within genetic modules
    • 10.1371/journal.pgen.1000776, 2788246, 20019809
    • Southworth LK, Owen AB, Kim SK. Aging mice show a decreasing correlation of gene expression within genetic modules. PLoS Genet 2009, 5:e1000776. 10.1371/journal.pgen.1000776, 2788246, 20019809.
    • (2009) PLoS Genet , vol.5
    • Southworth, L.K.1    Owen, A.B.2    Kim, S.K.3
  • 36
    • 84899502410 scopus 로고    scopus 로고
    • MicroRNA buffering and altered variance of gene expression in response to Salmonella infection
    • 10.1371/journal.pone.0094352, 3981782, 24718561
    • Bao H, Kommadath A, Plastow GS, Tuggle CK, Guan LL, Stothard P. MicroRNA buffering and altered variance of gene expression in response to Salmonella infection. PLoS One 2014, 9:e94352. 10.1371/journal.pone.0094352, 3981782, 24718561.
    • (2014) PLoS One , vol.9
    • Bao, H.1    Kommadath, A.2    Plastow, G.S.3    Tuggle, C.K.4    Guan, L.L.5    Stothard, P.6
  • 38
    • 65449136284 scopus 로고    scopus 로고
    • TopHat: discovering splice junctions with RNA-Seq
    • 10.1093/bioinformatics/btp120, 2672628, 19289445
    • Trapnell C, Pachter L, Salzberg SL. TopHat: discovering splice junctions with RNA-Seq. Bioinformatics 2009, 25:1105-1111. 10.1093/bioinformatics/btp120, 2672628, 19289445.
    • (2009) Bioinformatics , vol.25 , pp. 1105-1111
    • Trapnell, C.1    Pachter, L.2    Salzberg, S.L.3
  • 40
    • 84902552747 scopus 로고    scopus 로고
    • HTSeq - A Python framework to work with high-throughput sequencing data
    • Anders S, Pyl PT, Huber W. HTSeq - A Python framework to work with high-throughput sequencing data. bioRxiv 2014, http://dx.doi.org/10.1101/002824.
    • (2014) bioRxiv
    • Anders, S.1    Pyl, P.T.2    Huber, W.3
  • 42
    • 75249087100 scopus 로고    scopus 로고
    • EdgeR: a Bioconductor package for differential expression analysis of digital gene expression data
    • 10.1093/bioinformatics/btp616, 2796818, 19910308
    • Robinson MD, McCarthy DJ, Smyth GK. edgeR: a Bioconductor package for differential expression analysis of digital gene expression data. Bioinformatics 2010, 26:139-140. 10.1093/bioinformatics/btp616, 2796818, 19910308.
    • (2010) Bioinformatics , vol.26 , pp. 139-140
    • Robinson, M.D.1    McCarthy, D.J.2    Smyth, G.K.3
  • 43
    • 84863304598 scopus 로고    scopus 로고
    • Vienna, Austria: R Foundation for Statistical Computing, URLR Core Team
    • R Core Team R: A Language and Environment for Statistical Computing 2013, Vienna, Austria: R Foundation for Statistical Computing, URL http://www.R-project.org/, R Core Team.
    • (2013) R: A Language and Environment for Statistical Computing
  • 44
    • 33644872577 scopus 로고    scopus 로고
    • Limma: Linear Models for Microarray Data
    • New York: Springer, Gentleman R, Carey V, Dudoit S, Irizarry R, Huber W
    • Smyth GK. Limma: Linear Models for Microarray Data. Bioinforma Comput Biol Solut Using R Bioconductor 2005, 397-420. New York: Springer, Gentleman R, Carey V, Dudoit S, Irizarry R, Huber W.
    • (2005) Bioinforma Comput Biol Solut Using R Bioconductor , pp. 397-420
    • Smyth, G.K.1
  • 45
    • 23944458138 scopus 로고    scopus 로고
    • A general framework for weighted gene co-expression network analysis
    • Zhang B, Horvath S. A general framework for weighted gene co-expression network analysis. Stat Appl Genet Mol Biol 2005, 4:17.
    • (2005) Stat Appl Genet Mol Biol , vol.4 , pp. 17
    • Zhang, B.1    Horvath, S.2
  • 46
    • 0037199968 scopus 로고    scopus 로고
    • Hierarchical organization of modularity in metabolic networks
    • 10.1126/science.1073374, 12202830
    • Ravasz E, Somera AL, Mongru DA, Oltvai ZN, Barabási AL. Hierarchical organization of modularity in metabolic networks. Science 2002, 297:1551-1555. 10.1126/science.1073374, 12202830.
    • (2002) Science , vol.297 , pp. 1551-1555
    • Ravasz, E.1    Somera, A.L.2    Mongru, D.A.3    Oltvai, Z.N.4    Barabási, A.L.5
  • 47
    • 41449085571 scopus 로고    scopus 로고
    • Eigengene networks for studying the relationships between co-expression modules
    • 10.1186/1752-0509-1-54, 2267703, 18031580
    • Langfelder P, Horvath S. Eigengene networks for studying the relationships between co-expression modules. BMC Syst Biol 2007, 1:54. 10.1186/1752-0509-1-54, 2267703, 18031580.
    • (2007) BMC Syst Biol , vol.1 , pp. 54
    • Langfelder, P.1    Horvath, S.2
  • 48
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: a software environment for integrated models of biomolecular interaction networks
    • 10.1101/gr.1239303, 403769, 14597658
    • Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T. Cytoscape: a software environment for integrated models of biomolecular interaction networks. Genome Res 2003, 13:2498-2504. 10.1101/gr.1239303, 403769, 14597658.
    • (2003) Genome Res , vol.13 , pp. 2498-2504
    • Shannon, P.1    Markiel, A.2    Ozier, O.3    Baliga, N.S.4    Wang, J.T.5    Ramage, D.6    Amin, N.7    Schwikowski, B.8    Ideker, T.9
  • 50
    • 79551587720 scopus 로고    scopus 로고
    • Cytoscape 2.8: new features for data integration and network visualization
    • 10.1093/bioinformatics/btq675, 3031041, 21149340
    • Smoot ME, Ono K, Ruscheinski J, Wang P-L, Ideker T. Cytoscape 2.8: new features for data integration and network visualization. Bioinformatics 2011, 27:431-432. 10.1093/bioinformatics/btq675, 3031041, 21149340.
    • (2011) Bioinformatics , vol.27 , pp. 431-432
    • Smoot, M.E.1    Ono, K.2    Ruscheinski, J.3    Wang, P.-L.4    Ideker, T.5
  • 51
    • 68449101067 scopus 로고    scopus 로고
    • Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt
    • 10.1038/nprot.2009.97, 3159387, 19617889
    • Durinck S, Spellman PT, Birney E, Huber W. Mapping identifiers for the integration of genomic datasets with the R/Bioconductor package biomaRt. Nat Protoc 2009, 4:1184-1191. 10.1038/nprot.2009.97, 3159387, 19617889.
    • (2009) Nat Protoc , vol.4 , pp. 1184-1191
    • Durinck, S.1    Spellman, P.T.2    Birney, E.3    Huber, W.4


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