Proteome profile of a pandemic Vibrio parahaemolyticus SC192 strain in the planktonic and biofilm condition

Biofouling

Volumn 30, Issue 6, 2014, Pages 729-739

  Dharmaprakash, Akhilandeswarre ^a   Mutt, Eshita ^b   Jaleel, Abdul ^a   Ramanathan, Sowdhamini ^b   Thomas, Sabu ^a  

^a RAJIV GANDHI CENTRE FOR BIOTECHNOLOGY   (India)

^b TATA INSTITUTE OF FUNDAMENTAL RESEARCH   (India)

Author keywords

biofilm; liquid chromatography tandem mass spectrometry; multidimensional protein identification technology; planktonic stage; proteome; Vibrio parahaemolyticus

Indexed keywords

BIOFILM; GENOME; LIQUID CHROMATOGRAPHY; MASS SPECTROMETRY; MICROORGANISM; PLANKTON; PROTEIN; PROTEOMICS;

VIBRIO PARAHAEMOLYTICUS;

BACTERIAL PROTEIN; PROTEOME;

BIOFILM; BIOLOGY; COMPARATIVE STUDY; CONFOCAL MICROSCOPY; GENE ONTOLOGY; GENETICS; MASS SPECTROMETRY; METABOLISM; MICROBIOLOGY; PANDEMIC; PLANKTON; PROCEDURES; PROTEOMICS; TWO DIMENSIONAL GEL ELECTROPHORESIS; VIBRIO INFECTIONS; VIBRIO PARAHAEMOLYTICUS;

BACTERIAL PROTEINS; BIOFILMS; COMPUTATIONAL BIOLOGY; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; GENE ONTOLOGY; MASS SPECTROMETRY; MICROSCOPY, CONFOCAL; PANDEMICS; PLANKTON; PROTEOME; PROTEOMICS; VIBRIO INFECTIONS; VIBRIO PARAHAEMOLYTICUS;

EID: 84902544630     PISSN: 08927014     EISSN: 10292454     Source Type: Journal    
DOI: 10.1080/08927014.2014.916696     Document Type: Article

References (28)

1. Chen EI, Hewel J, Felding-Habermann B, Yates JR 3rd. 2006. Large scale protein profiling by combination of protein fractionation and multidimensional protein identification technology (MudPIT). Mol Cell Proteomics. 5:53-56.
2. Chowdhury NR, Chakraborty S, Ramamurthy T, Nishibuchi M, Yamasaki S, Takeda Y, Nair GB. 2000. Molecular evidence of clonal Vibrio parahaemolyticus pandemic strains. Emerg Infect Dis. 6:631-636.10.3201/eid0606.000612
3. Costerton JW, Stewart PS, Greenberg EP. 1999. Bacterial biofilms: a common cause of persistent infections. Sci. 284:1318-1322.10.1126/science.284.5418.1318
4. Enos-Berlage JL, Guvener ZT, Keenan CE, McCarter LL. 2005. Genetic determinants of biofilm development of opaque and translucent Vibrio parahaemolyticus. Mol Microbiol. 55:1160-1182.
5. Faruque SM, Biswas K, Udden SM, Ahmad QS, Sack DA, Nair GB, Mekalanos JJ. 2006. Transmissibility of cholera: in vivo-formed biofilms and their relationship to infectivity and persistence in the environment. Proc Natl Acad Sci USA. 103:6350-6355.10.1073/pnas.0601277103
6. Gasteiger E, Hoogland C, Gattiker A, Duvaud S, Wilkins MR, Appel RD, Bairoch A. 2005. Protein identification and analysis tools on the ExPASyServer. In: Walker JM, editor. The proteomics protocols handbook. Totowa (NJ): Humana Press; p. 571-607. EXPASY - Compute pI/MW (http://web.expasy.org/compute_pi/) and GRAVY calculator (http://www.gravy-calculator.de/).
7. Hall-Stoodley L, Costerton JW, Stoodley P. 2004. Bacterial biofilms: from the natural environment to infectious diseases. Nat Rev Microbiol. 2:95-108.
8. Ho H, Karl Alozie O, Tran S-Y, Ho TT, Do TH. 2011. Vibrio infections. Available from: http://emedicine.medscape.com/article/232038-overview
9. Huang Da W, Sherman BT, Lempicki RA. 2009. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat Protoc. 4:44-57. Available from: http://david.abcc.ncifcrf.gov/
10. Iida T, Hattori A, Tagomori K, Nasu H, Naim R, Honda T. 2001. Filamentous phage associated with recent pandemic strains of Vibrio parahaemolyticus. Emerg Infect Dis. 7:477-478.10.3201/eid0703.017325
11. Makino K, Oshima K, Kurokawa K, Yokoyama K, Uda T, Tagomori K, Iijima Y, Najima M, Nakano M, Yamashita A, et al. 2003. Genome sequence of Vibrio parahaemolyticus: a pathogenic mechanism distinct from that of V. cholerae. Lancet. 361:743-749.10.1016/S0140-6736(03)12659-1
12. Markowitz VM, Chen IM, Palaniappan K, Chu K, Szeto E, Grechkin Y, Ratner A, Jacob B, Huang J, Williams P, et al. 2012. IMG: the integrated microbial genomes database and comparative analysis system. Nucleic Acids Res. 40 (Database issue):D115-D122. Available from: http://img.jgi.doe.gov/cgi-bin/w/main.cgi?section=TaxonDetail&page=taxonDetail&taxon_oid=63700033510.1093/nar/gkr1044
13. Moorthy S, Watnick PI. 2005. Identification of novel stage-specific genetic requirements through whole genome transcription profiling of Vibrio cholerae biofilm development. Mol Microbiol. 57:1623-1635.
14. Nair GB, Ramamurthy T, Bhattacharya SK, Dutta B, Takeda Y, Sack DA. 2007. Global dissemination of Vibrio parahaemolyticus serotype O3:K6 and its serovariants. Clin Microbiol Rev. 20:39-48.10.1128/CMR.00025-06
15. Nyholm SV, Stabb EV, Ruby EG, McFall-Ngai MJ. 2000. Establishment of an animal-bacterial association: recruiting symbiotic vibrios from the environment. Proc Natl Acad Sci USA. 97:10231-10235.10.1073/pnas.97.18.10231
16. Oliveros JC. 2007. VENNY. An interactive tool for comparing lists with Venn diagrams. Available from: http://bioinfogp.cnb.csic.es/tools/venny/index.html
17. Parsek MR, Singh PK. 2003. Bacterial biofilms: an emerging link to disease pathogenesis. Annu Rev Microbiol. 57:677-701.10.1146/annurev.micro.57.030502.090720
18. Schembri MA, Kjaergaard K, Klemm P. 2003. Global gene expression in Escherichia coli biofilms. Mol Microbiol. 48:253-267.
19. Sen B, Dutta B, Chatterjee S, Bhattacharya MK, Nandy RK, Mukhopadhyay AK, Gangopadhyay DN, Bhattacharya SK, Ramamurthy T. 2007. The first outbreak of acute diarrhea due to a pandemic strain of Vibrio parahaemolyticus O3:K6 in Kolkata, India. Int J Infect Dis. 11:185-187.10.1016/j.ijid.2005.11.008
20. Seneviratne CJ, Wang Y, Jin L, Wong SS, Herath TD, Samaranayake LP. 2012. Unraveling the resistance of microbial biofilms: has proteomics been helpful? Proteomics. 12:651-665.10.1002/pmic.v12.4/5
21. Shime-Hattori A, Iida T, Arita M, Park KS, Kodama T, Honda T. 2006. Two type IV pili of Vibrio parahaemolyticus play different roles in biofilm formation. FEMS Microbiol Lett. 264:89-97.10.1111/fml.2006.264.issue-1
22. Su YC, Liu C. 2007. Vibrio parahaemolyticus: a concern of seafood safety. Food Microbiol. 24:549-558.10.1016/j.fm.2007.01.005
23. Wang L, Ling Y, Jiang H, Qiu Y, Qiu J, Chen H, Yang R, Zhou D. 2013. AphA is required for biofilm formation, motility, and virulence in pandemic Vibrio parahaemolyticus. Int J Food Microbiol. 160:245-251.10.1016/j.ijfoodmicro.2012.11.004
24. Whiteley M, Bangera MG, Bumgarner RE, Parsek MR, Teitzel GM, Lory S, Greenberg EP. 2001. Gene expression in Pseudomonas aeruginosa biofilms. Nature. 413:860-864.10.1038/35101627
25. Yeung PS, Boor KJ. 2004. Epidemiology, pathogenesis, and prevention of foodborne Vibrio parahaemolyticus infections. Foodborne Pathog Dis. 1:74-88.10.1089/153531404323143594
26. Yildiz FH, Visick KL. 2009. Vibrio biofilms: so much the same yet so different. Trends Microbiol. 17:109-118.10.1016/j.tim.2008.12.004
27. Yip ES, Geszvain K, DeLoney-Marino CR, Visick KL. 2006. The symbiosis regulator rscS controls the syp gene locus, biofilm formation and symbiotic aggregation by Vibrio fischeri. Mol Microbiol. 62:1586-1600.
28. Yu NY, Wagner JR, Laird MR, Melli G, Rey S, Lo R, Dao P, Sahinalp SC, Ester M, Foster LJ, Brinkman FS. 2010. PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes. Bioinformatics. 26:1608-1615. Available from: http://www.psort.org/10.1093/bioinformatics/btq249