Inferring the degree of incipient speciation in secondary contact zones of closely related lineages of Palearctic green toads (Bufo viridis subgroup)

Heredity

Volumn 113, Issue 1, 2014, Pages 9-20

  Dufresnes, C ^a   Bonato, L ^b   Novarini, N ^c   Betto Colliard, C ^a   Perrin, N ^a   Stock M ^d  

^a UNIVERSITY OF LAUSANNE   (Switzerland)

^b UNIVERSITY OF PADOVA   (Italy)

^c Museo Civico di Storia Naturale di Venezia   (Italy)

^d LEIBNIZ INSTITUTE OF FRESHWATER ECOLOGY AND INLAND FISHERIES   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

CONTACT ZONE; GENE FLOW; HYBRID; INTROGRESSION; PLEISTOCENE; POPULATION STRUCTURE; REPRODUCTIVE ISOLATION; SPECIATION (BIOLOGY); TOAD;

ITALY; SICILY;

AMPHIBIA; ANURA; BUFO; BUFO DEBILIS; BUFO VIRIDIS;

GENETIC MARKER; MITOCHONDRIAL DNA;

ANIMAL; BUFONIDAE; DNA SEQUENCE; EVOLUTION; GENE FLOW; GENETIC MARKER; GENETICS; GEOGRAPHY; HYBRIDIZATION; ITALY; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; POPULATION GENETICS; REPRODUCTIVE ISOLATION; SPECIES DIFFERENTIATION;

ANIMALS; BASE SEQUENCE; BIOLOGICAL EVOLUTION; BUFONIDAE; DNA, MITOCHONDRIAL; GENE FLOW; GENETIC MARKERS; GENETIC SPECIATION; GENETICS, POPULATION; GEOGRAPHY; HYBRIDIZATION, GENETIC; ITALY; MOLECULAR SEQUENCE DATA; REPRODUCTIVE ISOLATION; SEQUENCE ANALYSIS, DNA;

EID: 84902544546     PISSN: 0018067X     EISSN: 13652540     Source Type: Journal    
DOI: 10.1038/hdy.2014.26     Document Type: Article

References (59)

1. Abbott R, Albach D, Ansell S, Arntzen JW, Baird SJE, Bierne N et al. (2013). Hybridization and speciation. J Evol Biol 26: 229-246.
2. Amorosi A (2004). Po plain. In: Margottini C, Vai GB (eds) Climex Maps Italy. Litho-Paleoenvironmental Maps of Italy During the Last Two Climatic Extremes-Explanatory notes. Museo Geologico Cappellini: Bologna, pp 38.
3. Anderson EC, Thompson EA (2002). A model-based method for identifying species hybrids using multilocus genetic data. Genetics 160: 1217-1229. (Pubitemid 34263481)
4. Barton NH, Charlesworth B (1984). Genetic revolutions, founder effects and speciation. Annu Rev Ecol Evol Syst 15: 133-164.
5. Barton NH, Hewitt GM (1985). Analysis of hybrid zones. Annu Rev Ecol Evol Syst 16: 113-148.
6. Belkhir K, Borsa P, Chikhi L, Goudet J, Bonhomme F (1998). GENETIX 3.07, WindowsTM software for population genetics. University of Montpellier II: Montpellier, France.
7. Blab J, Brüggemann P, Sauer H (1991). Tierwelt in der Zivilisationslandschaft, Teil II: Raumeinbindung und Biotopnutzung bei Reptilien und Amphibien im Drachenfelser. Land. Schriftenr. Landschaftspfl. Naturschutz (Bonn-Bad Godesberg) 34: 1-94.
8. Buggs RJA (2007). Empirical study of hybrid zone movement. Heredity 99: 301-312.
9. Canestrelli D, Nascetti G (2008). Phylogeography of the pool frog Rana (Pelophylax) lessonae in the Italian Peninsula and Sicily: Multiple refugia, glacial expansions and nuclear-mitochondrial discordance. J Biogeogr 35: 1923-1936.
10. Clement M, Posada D, Crandall K (2000). TCS: A computer program to estimate gene genealogies. Mol Ecol 9: 1657-1660.
11. Colliard C, Sicilia A, Turrisi GF, Arculeo M, Perrin N, Stöck M (2010). Strong reproductive barriers in a narrow hybrid zone of West-Mediterranean green toads (Bufo viridis subgroup) with Plio-Pleistocene divergence. BMC Evol Biol 10: 232.
12. Davies NB, Halliday TR (1979). Competitive mate searching in male common toads, Bufo bufo. Anim Behav 27: 1253-1267.
13. Devitt TJ, Baird SJE, Moritz C (2011). Asymmetric reproductive isolation between terminal forms of the salamander ring species Ensatina eschscholtzii revealed by fine-scale genetic analysis of a hybrid zone. BMC Evol Biol 11: 245.
14. Dufresnes C, Betto-Colliard C, Perrin N, Stöck M (2011). Thirteen polymorphic microsatellite markers for the European green toad Bufo viridis viridis, a declining amphibian species. Conserv Genet Resour 3: 311-313.
15. Drummond AJ, Ho SYW, Rawlence N, Rambaut A (2007). A Rough Guide to BEAST 1.4. University of Auckland: Auckland, New Zealand. http://beast-mcmc. googlecode.com/files/BEAST14-Manual-6July2007.pdf
16. Ersts PJ (2006). Geographic Distance Matrix Generator (version 1.2.3). American Museum of Natural History: New York, USA. http:// biodiversityinformatics.amnh.org/open-source/gdmg
17. Evanno G, Regnaut S, Goudet J (2005). Detecting the number of clusters of individuals using the software STRUCTURE: A simulation study. Mol Ecol 14: 2611-2620. (Pubitemid 40886055)
18. Excoffier L, Laval G, Schneider S (2005). Arlequin (version 3.0): An integrated software package for population genetics data analysis. Evol Bioinform 1: 47-50.
19. Fontana A, Mozzi P, Bondesan A (2008). Alluvial megafans in the Venetian-Friulian Plain (north-eastern Italy): Evidence of sedimentary and erosive phases during Late Pleistocene and Holocene. Quat Int 189: 71-90.
20. Forman RTT, Sperling D, Bissonette JA, Clevenger AP, Cutshall CD, Dale VH et al. (2003). Road Ecology. Island Press: Washington, D.C.
21. Gay L, Crochet PA, Bell DA, Lenormand T (2008). Comparing clines on molecular and phenotypic traits: A window on tension zone models. Evolution 62: 2789-2806.
22. Goudet J (1995). FSTAT (version 1.2): A computer program to calculate F-statistics. J Hered 86: 485-486.
23. Goudet J (1999). PCAGEN v. 1.2.1. University of Lausanne: Switzerland. http://www2.unil.ch/popgen/softwares /pcagen.htm
24. Gouy N, Guindon S, Gascuael O (2010). SeaView version 4: A multiplatform user interface for sequence alignment and phylogenetic tree building. Mol Biol Evol 27: 221-224.
25. Hofman S, Spolsky C, Uzzell T, Cogalniceanu D, Babik W, Szymura JM (2007). Phylogeography of the fire-bellied toads Bombina: Independent Pleistocene histories inferred from mitochondrial genomes. Mol Ecol 16: 2301-2316. (Pubitemid 46897160)
26. Hoskin CJ, Higgie M, McDonald KR, Moritz C (2005). Reinforcement drives rapid allopatric speciation. Nature 437: 1353-1356. (Pubitemid 41568680)
27. Kruuk LEB, Gilchrist JS, Barton NH (1999). Hybrid dysfunction in fire-bellied toads (Bombina). Evolution 53: 1611-1616. (Pubitemid 29524155)
28. Librado P, Rozas J (2009). DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics 25: 1451-1452.
29. Malone JH, Fontenot BE (2008). Patterns of reproductive isolation in toads. PLoS One 12: E3900.
30. Nosil P, Feder JL (2012). Genomic divergence during speciation: Causes and consequences. Philos Trans R Soc B 367: 332-342.
31. Pabijan M, Wandycz A, Hofman S, Wecek K, Piwczynski M, Szymura JM (2013). Complete mitochondrial genomes resolve phylogenetic relationships within Bombina (Anura: Bombinatoridae). Mol Phylogenet Evol 69: 63-74.
32. Petit RJ, Excoffier L (2009). Gene flow and species delimitation. Trends Ecol Evol 24: 386-393.
33. Pereira R, Wake DB (2009). Genetic leakage after adaptive and non-Adaptive divergence in the Ensatina eschscholtzii ring species. Evolution 63: 2288-2301.
34. Pereira R, Monahan WB, Wake DB (2011). Predictors for reproductive isolation in a ring species complex following genetic and ecological divergence. BMC Evol Biol 11: 194.
35. Piovan S, Mozzi P, Stefani C (2010). Bronze age paleohydrography of the southern Venetian Plain. Geoarchaeology 25: 6-35.
36. Posada D (2008). jModelTest: Phylogenetic model averaging.Mol Biol Evol 27: 1253-1256.
37. Pritchard JK, Stephens M, Donnelly P (2000). Inference of population structure using multilocus genotype data. Genetics 155: 945-959. (Pubitemid 30397141)
38. Ramos-Onsins SE, Rozas J (2002). Statistical properties of new neutrality tests against population growth. Mol Biol Evol 19: 2092-2100. (Pubitemid 35440445)
39. Santucci F, Nascetti G, Bullini L (1996). Hybrid zones between two genetically differentiated forms of the pond frog Rana lessonae in southern Italy. J Evol Biol 9: 429-450.
40. Sá-Pinto A, Baird SJE, Pinho C, Alexandrino P, Branco M (2010). A three-way contact zone between forms of Patella rustica (Mollusca: Patellidae) in the central Mediterranean Sea. Biol J Linn Soc 100: 154-169.
41. Sasa MM, Chippindale PT, Johnson NA (1998). Patterns of postzygotic isolation in frogs. Evolution 52: 1811-1820. (Pubitemid 29054009)
42. Schilthuizen M, MCWG Giesbers, Beukeboom LW (2011). Haldanes rule in the 21st century. Heredity 107: 95-102.
43. Seehausen O, Takimoto G, Roy D, Jokela J (2008). Speciation reversal and biodiversity dynamics with hybridization in changing environments. Mol Ecol 17: 30-44. (Pubitemid 350292485)
44. Sequeira F, Sodre D, Ferrand N, Bernardi JAR, Sampaio I, Schneider H et al. (2011). Hybridization and massive mtDNA unidirectional introgression between the closely related Neotropical toads Rhinella marina and R. schneideri inferred from mtDNA and nuclear markers. BMC Evol Biol 11: 264.
45. Simöes PI, Lima AP, Farias IP (2012). Restricted natural hybridization between two species of litter frogs on a threatened landscape in southwestern Brazilian Amazonia. Conserv Genet 13: 1145-1159.
46. Smadja CM, Butlin RK (2011). A framework for comparing processes of speciation in the presence of gene flow. Mol Ecol 20: 5123-5140.
47. Sobel JM, Chen GF, Watt LR, Schemske DW (2010). The biology of speciation. Evolution 64: 295-315.
48. Stöck M, Moritz C, Hickerson M, Frynta D, Dujsebayeva T, Eremchenko V et al. (2006). Evolution of mitochondrial relationships and biogeography of Palearctic green toads (Bufo viridis subgroup) with insights in their genomic plasticity. Mol Phylogenet Evol 41: 663-689. (Pubitemid 44755421)
49. Stöck M, Sicilia A, Belfiore N, Buckley D, Lo Brutto S, Lo Valvo M et al. (2008 Post-Messinian evolutionary relationships across the Sicilian channel: Mitochondrial and nuclear markers link a new green toad from Sicily to African relatives. BMC Evol Biol 8: 56.
50. Stöck M, Roth P, Podloucky R, Grossenbacher K (2008). Wechselkröten-unter Berücksichtigung von Bufo viridis virdis Laurenti, 1768; Bufo variabilis (Pallas, 1769); Bufo boulengeri Lataste, 1879; Bufo balearicus Bö ttger, 1880 und Bufo siculus Stöck, Sicilia, Belfiore, Lo Brutto, Lo Valvo und Arculeo, 2008. In: Grossenbacher K (ed) Handbuch der Amphibien und Reptilien Europas vol. 5 (Froschlurche II). AULA-Verlag: Wiesbaden, pp 413-498.
51. Stöck M, Savary R, Betto-Colliard C, Biollay S, Jourdan-Pineau H, Perrin N (2013). Low rates of XY recombination, not turnovers, account for homomorphic sex chromosomes in several diploid species of Paleartic green toads (Bufo viridis subgroup). J Evol Biol 3: 674-682.
52. Sumida M, Kotaki M, Islam MM, Djong TH, Igawa T, Kondo Y et al. (2007). Evolutionary relationships and reproductive isolating mechanisms in the rice frog (Fejervarya limnocharis) species complex from Sri Lanka, Thailand, Taiwan and Japan, inferred from mtDNA gene sequences, allozymes, and crossing experiments. Zool Sci 24: 547-562. (Pubitemid 47206499)
53. Szymura JM (1993). Analysis of hybrid zones with Bombina. In: Harrison R (ed) Hybrid Zones and the Evolutionary Process. Oxford University Press: New York, pp 261-289.
54. Szymura J, Barton N (1986). Genetic analysis of a hybrid zone between the fire-bellied toads, Bombina bombina and Bombina variegata, near Cracow in southern Poland. Evolution 40: 1141-1159.
55. Van Oosterhout C, Hutchinson WF, Derek P, Wills M, Shipley P (2004). MicroChecker: Software for identifying and correcting genotyping errors in microsatellite data. Mol Ecol Notes 4: 535-538. (Pubitemid 39147523)
56. Verardi A, Canestrelli D, Nascetti G (2009). Nuclear and mitochondrial patterns of introgression between the parapatric European treefrogs Hyla arborea and H. intermedia. Annls Zool Fennici 46: 247-258.
57. Vines TH, Köhler SC, Thiel M, Ghira I, Sands TR, MacCullum CJ et al. (2003). The maintenance of reproductive isolation in a mosaic hybrid zone between the fire-bellied toads Bombina bombina and B. variegata. Evolution 57: 1876-1888. (Pubitemid 37096403)
58. Wilson AC, Maxson LR, Starich VM (1974). Two types of molecular evolution. Evidence from studies of interspecific hybridization. Proc Natl Acad Sci USA 71: 2843-2847.
59. Woolfit M, Bromham L (2005). Population size and molecular evolution on islands. Proc R Soc B 272: 2277-2282. (Pubitemid 41513131).