Coiled-coil deformations in crystal structures: The measles virus phosphoprotein multimerization domain as an illustrative example

Acta Crystallographica Section D: Biological Crystallography

Volumn 70, Issue 6, 2014, Pages 1589-1603

  Blocquel, David ^a,b   Habchi, Johnny ^a,b   Durand, Eric ^a,b   Sevajol, Marion ^a,b   Ferron, François ^a,b   Erales, Jenny ^a,b   Papageorgiou, Nicolas ^a,b   Longhi, Sonia ^a,b  

^a AIX MARSEILLE UNIVERSITY   (France)

^b CNRS   (France)

Author keywords

coiled coils; measles virus phosphoprotein multimerization domain

Indexed keywords

BIOPOLYMER; PHOSPHOPROTEIN; VIRUS PROTEIN;

CHEMISTRY; CIRCULAR DICHROISM; MASS SPECTROMETRY; MEASLES VIRUS; PROTEIN CONFORMATION; ULTRAVIOLET SPECTROPHOTOMETRY; X RAY CRYSTALLOGRAPHY;

BIOPOLYMERS; CIRCULAR DICHROISM; CRYSTALLOGRAPHY, X-RAY; MEASLES VIRUS; PHOSPHOPROTEINS; PROTEIN CONFORMATION; SPECTROMETRY, MASS, MATRIX-ASSISTED LASER DESORPTION-IONIZATION; SPECTROPHOTOMETRY, ULTRAVIOLET; VIRAL PROTEINS;

EID: 84902482480     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S139900471400234X     Document Type: Article

References (60)

1. Adams, P. D. et al. (2010). Acta Cryst. D66, 213-221.
2. Albertini, A. A. V., Schoehn, G. & Ruigrok, R.W. (2005). Virologie, 9, 83-92.
3. Alva, V., Syamala Devi, D. P. & Sowdhamini, R. (2008). Protein Pept. Lett. 15, 33-38.
4. Baker, N. A., Sept, D., Joseph, S., Holst, M. J. & McCammon, J. A. (2001). Proc. Natl Acad. Sci. USA, 98, 10037-10041.
5. Blocquel, D., Beltrandi, M., Erales, J., Barbier, P. & Longhi, S. (2013). Virology, 446, 162-172.
6. Blocquel, D., Bourhis, J.-M., Éléouët, J.-F., Gerlier, D., Habchi, J., Jamin, M., Longhi, S. & Yabukarski, F. (2012). Virologie, 16, 225-257.
7. Bourhis, J.-M., Canard, B. & Longhi, S. (2006). Virology, 344, 94-110.
8. Bourhis, J.-M., Johansson, K., Receveur-Bréchot, V., Oldfield, C. J., Dunker, K. A., Canard, B. & Longhi, S. (2004). Virus Res. 99, 157-167.
9. Bourhis, J.-M. & Longhi, S. (2007). Measles Virus Nucleoprotein, edited by S. Longhi, pp. 1-35. Hauppage: Nova Publishers Inc.
10. Bowman, M. C., Smallwood, S. & Moyer, S. A. (1999). J. Virol. 73, 6474-6483.
11. Bruhn, J. F., Barnett, K. C., Bibby, J., Thomas, J.M. H., Keegan, R. M., Rigden, D. J., Bornholdt, Z. A. & Saphire, E. O. (2014). J. Virol. 88, 758-762.
12. Bullough, P. A., Hughson, F. M., Skehel, J. J. & Wiley, D. C. (1994). Nature (London), 371, 37-43.
13. Burkhard, P., Stetefeld, J. & Strelkov, S. V. (2001). Trends Cell Biol. 11, 82-88.
14. Chen, V. B., Arendall, W. B., Headd, J. J., Keedy, D. A., Immormino, R. M., Kapral, G. J., Murray, L. W., Richardson, J. S. & Richardson, D. C. (2010). Acta Cryst. D66, 12-21.
15. Communie, G., Crépin, T., Maurin, D., Jensen, M. R., Blackledge, M. & Ruigrok, R. W. (2013). J. Virol. 87, 7166-7169.
16. Cox, R., Green, T. J., Purushotham, S., Deivanayagam, C., Bedwell, G. J., Prevelige, P. E. & Luo, M. (2013). J. Virol. 87, 7558-7568.
17. Curran, J. & Kolakofsky, D. (1999). Adv. Virus Res. 54, 403-422.
18. DeLano, W. L. (2002). PyMOL. http://www.pymol.org.
19. Delaunay, B. (1934). Izv. Akad. Nauk SSSR Otdel. Mat. Est. Nauk, 7, 793-800.
20. Ding, H., Green, T. J., Lu, S. & Luo,M. (2006). J. Virol. 80, 2808-2814.
21. Doublié, S. (1997). Methods Enzymol. 276, 523-530.
22. Emsley, P. & Cowtan, K. (2004). Acta Cryst. D60, 2126-2132.
23. Franke, D. & Svergun, D. I. (2009). J. Appl. Cryst. 42, 342-346.
24. Gely, S., Lowry, D. F., Bernard, C., Jensen, M. R., Blackledge, M., Costanzo, S., Bourhis, J.-M., Darbon, H., Daughdrill, G. & Longhi, S. (2010). J. Mol. Recognit. 23, 435-447.
25. Habchi, J. & Longhi, S. (2012). Mol. Biosyst. 8, 69-81.
26. Habchi, J., Mamelli, L., Darbon, H. & Longhi, S. (2010). PLoS One, 5, e11684.
27. Huber, M., Cattaneo, R., Spielhofer, P., O ̈rvell, C., Norrby, E., Messerli, M., Perriard, J.-C. & Billeter, M. A. (1991). Virology, 185, 299-308.
28. Ivanov, I., Crépin, T., Jamin, M. & Ruigrok, R. W. (2010). J. Virol. 84, 3707-3710.
29. Johansson, K., Bourhis, J.-M., Campanacci, V., Cambillau, C., Canard, B. & Longhi, S. (2003). J. Biol. Chem. 278, 44567-44573.
30. Kabsch, W. (2010). Acta Cryst. D66, 125-132.
31. Karlin, D., Ferron, F., Canard, B. & Longhi, S. (2003). J. Gen. Virol. 84, 3239-3252.
32. Karlin, D., Longhi, S. & Canard, B. (2002). Virology, 302, 420-432.
33. Karlin, D., Longhi, S., Receveur, V. & Canard, B. (2002). Virology, 296, 251-262.
34. Kolakofsky, D., Le Mercier, P., Iseni, F. & Garcin, D. (2004). Virology, 318, 463-473.
35. Konarev, P. V., Volkov, V. V., Sokolova, A. V., Koch, M. H. J. & Svergun, D. I. (2003). J. Appl. Cryst. 36, 1277-1282.
36. Lamb, R. A. & Parks, G. D. (2007). Fields Virology, edited by D. M. Knipe & P. M. Howley, pp. 1450-1497. Philadelphia: Lippincott Williams & Wilkins.
37. Lau, S. Y. M., Taneja, A. K. & Hodges, R. S. (1984). J. Biol. Chem. 259, 13253-13261.
38. Leyrat, C., Gérard, F. C., de Almeida Ribeiro, E. Jr, Ivanov, I., Ruigrok, R. W. & Jamin, M. (2010). Protein Pept. Lett. 17, 979-987.
39. Llorente,M. T., García-Barreno, B., Calero,M., Camafeita, E., López, J. A., Longhi, S., Ferrón, F., Varela, P. F. & Melero, J. A. (2006). J. Gen. Virol. 87, 159-169.
40. Llorente, M. T., Taylor, I. A., López-Viñ as, E., Gomez-Puertas, P., Calder, L. J., García-Barreno, B. & Melero, J. A. (2008). Proteins, 72, 946-958.
41. Longhi, S. (2009). Curr. Top. Microbiol. Immunol. 329, 103-128.
42. Longhi, S. (2011). Negative Strand RNA Virus, edited by M. Luo, pp. 95-125. Singapore: World Scientific Publishing.
43. Longhi, S., Receveur-Bréchot, V., Karlin, D., Johansson, K., Darbon, H., Bhella, D., Yeo, R., Finet, S. & Canard, B. (2003). J. Biol. Chem. 278, 18638-18648.
44. Lupas, A. (1996). Trends Biochem. Sci. 21, 375-382.
45. Lupas, A. N. & Gruber, M. (2005). Adv. Protein Chem. 70, 37-78.
46. Meng, E. C., Pettersen, E. F., Couch, G. S., Huang, C. C. & Ferrin, T. E. (2006). BMC Bioinformatics, 7, 339.
47. Pettersen, E. F., Goddard, T. D., Huang, C. C., Couch, G. S., Greenblatt, D. M., Meng, E. C. & Ferrin, T. E. (2004). J. Comput. Chem. 25, 1605-1612.
48. Rahaman, A., Srinivasan, N., Shamala, N. & Shaila, M. S. (2004). J. Biol. Chem. 279, 23606-23614.
49. Roux, L. (2005). Virologie, 9, 19-34.
50. Spehner, D., Drillien, R. & Howley, P. M. (1997). Virology, 232, 260-268.
51. Strelkov, S. V. & Burkhard, P. (2002). J. Struct. Biol. 137, 54-64.
52. Sulzenbacher, G. et al. (2002). Acta Cryst. D58, 2109-2115.
53. Tarbouriech, N., Curran, J., Ebel, C., Ruigrok, R. W. & Burmeister, W. P. (2000). Virology, 266, 99-109.
54. Tarbouriech, N., Curran, J., Ruigrok, R. W. & Burmeister, W. P. (2000). Nature Struct. Biol. 7, 777-781.
55. Uversky, V. N. (2002). Eur. J. Biochem. 269, 2-12.
56. Volkov, V. V. & Svergun, D. I. (2003). J. Appl. Cryst. 36, 860-864.
57. Walshaw, J. & Woolfson, D. N. (2001). J. Mol. Biol. 307, 1427-1450.
58. Whitmore, L. & Wallace, B. A. (2004). Nucleic Acids Res. 32, W668-W673.
59. Whitmore, L. & Wallace, B. A. (2008). Biopolymers, 89, 392-400.
60. Wilkins, D. K., Grimshaw, S. B., Receveur, V., Dobson, C. M., Jones, J. A. & Smith, L. J. (1999). Biochemistry, 38, 16424-16431.