Gibberellin deficiency pleiotropically induces culm bending in sorghum: An insight into sorghum semi-dwarf breeding

Scientific Reports

Volumn 4, Issue , 2014, Pages

  Ordonio, Reynante L ^a   Ito, Yusuke ^a   Hatakeyama, Asako ^a   Ohmae Shinohara, Kozue ^a   Kasuga, Shigemitsu ^b   Tokunaga, Tsuyoshi ^c   Mizuno, Hiroshi ^d   Kitano, Hidemi ^a   Matsuoka, Makoto ^a   Sazuka, Takashi ^a  

^a NAGOYA UNIVERSITY   (Japan)

^b SHINSHU UNIVERSITY   (Japan)

^c Earth Note Co Ltd   (Japan)

^d NATIONAL INSTITUTE OF AGROBIOLOGICAL SCIENCES   (Japan)

Author keywords

[No Author keywords available]

Indexed keywords

GIBBERELLIN; TRIAZOLE DERIVATIVE; UNICONAZOLE; VEGETABLE PROTEIN;

AMINO ACID SEQUENCE; BIOSYNTHESIS; BREEDING; CLASSIFICATION; DOSE RESPONSE; DRUG EFFECTS; GENETIC COMPLEMENTATION; GENETICS; GRAVITROPISM; GROWTH, DEVELOPMENT AND AGING; METABOLISM; MOLECULAR GENETICS; MUTATION; NUCLEOTIDE SEQUENCE; PHYLOGENY; PLANT STEM; PLEIOTROPY; RICE; SEQUENCE HOMOLOGY; SORGHUM;

AMINO ACID SEQUENCE; BASE SEQUENCE; BIOSYNTHETIC PATHWAYS; BREEDING; DOSE-RESPONSE RELATIONSHIP, DRUG; GENETIC COMPLEMENTATION TEST; GENETIC PLEIOTROPY; GIBBERELLINS; GRAVITROPISM; MOLECULAR SEQUENCE DATA; MUTATION; ORYZA SATIVA; PHYLOGENY; PLANT PROTEINS; PLANT STEMS; SEQUENCE HOMOLOGY, AMINO ACID; SEQUENCE HOMOLOGY, NUCLEIC ACID; SORGHUM; TRIAZOLES;

EID: 84902449519     PISSN: None     EISSN: 20452322     Source Type: Journal    
DOI: 10.1038/srep05287     Document Type: Article

References (60)

1. Sato, Y. et al. Loss-of-function mutations in the rice homeobox gene OSH15 affect the architecture of internodes resulting in dwarf plants. EMBO J. 18, 992-1002 (1999). (Pubitemid 29082278)
2. Yang, W. et al. BENT UPPERMOST INTERNODE1 encodes the class II formin FH5 crucial for actin organization and rice development. Plant Cell 23, 661-680 (2011).
3. Cui, X. et al. Control of transposon activity by a histone H3K4 demethylase in rice. Proc. Natl. Acad. Sci. USA. 110, 1953-1958 (2013).
4. Komorisono, M. et al. Analysis of the rice mutant dwarf and gladius leaf 1. Aberrant katanin-mediated microtubule organization causes up-regulation of gibberellin biosynthetic genes independently of gibberellin signaling. Plant Physiol. 138, 1982-1993 (2005).
5. Bouquin, T., Mattsson, O., Naested, H., Foster, R. & Mundy, J. The Arabidopsis lue1 mutant defines a katanin p60 ortholog involved in hormonal control of microtubule orientation during cell growth. J. Cell Sci. 116, 791-801 (2003). (Pubitemid 36367629)
6. Multani, D. S. et al. Loss of an MDR transporter in compact stalks of maize br2 and sorghum dw3 mutants. Science 302, 81-84 (2003). (Pubitemid 37210690)
7. Knoller, A. S., Blakeslee, J. J., Richards, E. L., Peer, W. A. & Murphy, A. S. Brachytic2/ZmABCB1 functions in IAA export from intercalary meristems. J. Exp. Bot. 61, 3689-3696 (2010).
8. Aya, K. et al. A novel AP2-type transcription factor, SMALL ORGAN SIZE1, controls organ size downstream of an auxin signaling pathway. Plant Cell Physiol. 55, 897-912 (2014).
9. Sazuka, T. et al. A rice tryptophan deficient dwarf mutant, tdd1, contains a reduced level of indole acetic acid and develops abnormal flowers and organless embryos. Plant J. 60, 227-241 (2009).
10. Ephritikhine, G., Fellner, M., Vannini, C., Lapous, D. & Barbier-Brygoo, H. The sax1 dwarf mutant of Arabidopsis thaliana shows altered sensitivity of growth responses to abscisic acid, auxin, gibberellins and ethylene and is partially rescued by exogenous brassinosteroid. Plant J. 18, 303-314 (1999).
11. Dai, Y., Fu, Z. & Li, J. Isolation and characterization of an Arabidopsis bush and dwarf mutant. Acta Bot. Sin. 45, 621-625 (2003). (Pubitemid 37054125)
12. Noguchi, T. et al. Arabidopsis det2 is defective in the conversion of (24R)-24-methylcholest-4-En-3-one to (24R)-24-methyl-5a-cholestan-3-one in brassinosteroid biosynthesis. Plant Physiol. 120, 833-839 (1999). (Pubitemid 29384513)
13. Nole-Wilson, S., Rueschhoff, E. E., Bhatti, H. & Franks, R. G. Synergistic disruptions in seuss cyp85A2 double mutants reveal a role for brassinolide synthesis during gynoecium and ovule development. BMC Plant Biol. 10, 198 (2010).
14. Clouse, S. D., Langford, M. & McMorris, T. C. A brassinosteroid- insensitive mutant in Arabidopsis thaliana exhibits multiple defects in growth and development. Plant Physiol. 111, 671-678 (1996). (Pubitemid 126450540)
15. Nakamura, A. et al. The role of OsBRI1 and its homologous genes, OsBRL1 and OsBRL3, in rice. Plant Physiol. 140, 580-590 (2006). (Pubitemid 43956278)
16. Sakamoto, T., Kitano, H. & Fujioka, S. An E3 ubiquitin ligase, ERECT LEAF1, functions in brassinosteroid signaling of rice. Plant Signal. Behav. 8, e27117 (2013).
17. Hong, Z. et al. A rice brassinosteroid-deficient mutant, ebisu dwarf (d2), is caused by a loss of function of a new member of cytochrome P450. Plant Cell 15, 2900-2910 (2003). (Pubitemid 37546259)
18. Marti, E., Gisbert, C., Bishop, G. J., Dixon, M. S. & Garcia-Martinez, J. L. Genetic and physiological characterization of tomato cv. Micro-Tom. J. Exp. Bot. 57, 2037-2047 (2006). (Pubitemid 43992252)
19. Chono, M. et al. A semidwarf phenotype of barley uzu results from a nucleotide substitution in the gene encoding a putative brassinosteroid receptor. Plant Physiol. 133, 1209-1219 (2003). (Pubitemid 37458019)
20. Arite, T. et al. d14, a strigolactone-insensitive mutant of rice, shows an accelerated outgrowth of tillers. Plant Cell Physiol. 50, 1416-1424 (2009).
21. Jiang, L. et al. DWARF 53 acts as a repressor of strigolactone signalling in rice. Nature 504, 401-405 (2013).
22. Sakamoto, T. et al. An overview ofgibberellin metabolism enzyme genes and their related mutants in rice. Plant Physiol. 134, 1642-1653 (2004). (Pubitemid 38527372)
23. Davidson, S. E., Elliott, R. C., Helliwell, C. A., Poole, A. T. & Reid, J. B. The pea gene NA encodes ent-kaurenoic acid oxidase. Plant Physiol. 131, 335-344 (2003). (Pubitemid 36141230)
24. Fridborg, I., Kuusk, S., Moritz, T. & Sundberg, E. The Arabidopsis dwarf mutant shi exhibits reduced gibberellin responses conferred by overexpression of a new putative zinc finger protein. Plant Cell 11, 1019-1031 (1999).
25. Peng, J. et al. The Arabidopsis GAI gene defines a signaling pathway that negatively regulates gibberellin responses. Genes Dev. 11, 3194-3205 (1997). (Pubitemid 27528059)
26. Sun, T. P. & Kamiya, Y. The Arabidopsis GA1 locus encodes the cyclase ent-kaurene synthetase A of gibberellin biosynthesis. Plant Cell 6, 1509-1518 (1994). (Pubitemid 24976505)
27. Wolbang, C. M., Davies, N. W., Taylor, S. A. & Ross, J. J. Gravistimulation leads to asymmetry of both auxin and gibberellin levels in barley pulvini. Physiol. Plant. 131, 140-148 (2007). (Pubitemid 47228480)
28. Bamberg, J. B. & Hanneman, R. E. Characterization of a new gibberellin related dwarfing locus in potato (Solanum tuberosum L.). Am. Potato J. 68, 45-52 (1991).
29. Hedden, P. & Phillips, A. L. Gibberellin metabolism: new insights revealed by the genes. Trends Plant Sci. 5, 523-530 (2000). (Pubitemid 32099970)
30. Fleet, C. M. & Sun, T. P. A DELLAcate balance: the role of gibberellin in plant morphogenesis. Curr. Opin. Plant Biol. 8, 77-85 (2005). (Pubitemid 40099251)
31. Tanimoto, E. Regulation of root growth by plant hormones-Roles for auxin and gibberellin. Crit. Rev. Plant Sci. 24, 249-265 (2005). (Pubitemid 41430496)
32. Wang, Y. & Li, J. The plant architecture of rice (Oryza sativa). Plant Mol. Biol. 59, 75-84 (2005). (Pubitemid 41429423)
33. Chhun, T. et al. Gibberellin regulates pollen viability and pollen tube growth in rice. Plant Cell 19, 3876-3888 (2007). (Pubitemid 351253108)
34. Lo, S. F. et al. A novel class of gibberellin 2-oxidases control semidwarfism, tillering, and root development in rice. Plant Cell 20, 2603-2618 (2008).
35. Hedden, P. The genes of the Green Revolution. Trends in Genet. 19, 5-9 (2003). (Pubitemid 35472171)
36. Sasaki, A. et al. Green revolution: a mutant gibberellin-synthesis gene in rice. Nature 416, 701-702 (2002).
37. Spielmeyer, W., Ellis, M. H. & Chandler, P. M. Semidwarf (sd-1), "green revolution" rice, contains a defective gibberellin 20-oxidase gene. Proc. Natl. Acad. Sci. USA 99, 9043-9048 (2002). (Pubitemid 34693680)
38. Peng, J. et al. 'Green revolution' genes encode mutant gibberellin response modulators. Nature 400, 256-261 (1999). (Pubitemid 29334139)
39. Itoh, H. et al. A rice semi-dwarf gene, Tan-Ginbozu (D35), encodes the gibberellin biosynthesis enzyme, ent-kaurene oxidase. Plant Mol. Biol. 54, 533-547 (2004). (Pubitemid 39174908)
40. Wang, Y. H., Bible, P., Loganantharaj, R. & Upadhyaya, H. D. Identification of SSR markers associated with height using pool-based genome-wide association mapping in sorghum. Mol. Breed. 30, 281-292 (2012).
41. Morris, G. P. et al. Population genomic and genome-wide association studies of agroclimatic traits in sorghum. Proc. Natl. Acad. Sci. USA 110, 453-458 (2013).
42. Thurber, C. S., Ma, J. M., Higgins, R. H. & Brown, P. J. Retrospective genomic analysis of sorghum adaptation to temperate-zone grain production. Genome Biol. 14, R68 (2013).
43. Helliwell, C. A. et al. Cloning of the Arabidopsis ent-kaurene oxidase gene GA3. Proc. Natl. Acad. Sci. USA 95, 9019-9024 (1998). (Pubitemid 28350607)
44. Fujioka, S. et al. Qualitative and quantitative analyses of gibberellins in vegetative shoots of normal, dwarf-1, dwarf-2, dwarf-3, and dwarf-5 seedlings of Zea mays L. Plant Physiol. 88, 1367-1372 (1988).
45. Wu, J. et al. Dominant and pleiotropic effects of a GAI gene in wheat results from a lack of interaction between DELLA and GID1. Plant Physiol. 157, 2120-2130 (2011).
46. Roychoudhry, S., Del Bianco, M., Kieffer, M. & Kepinski, S. Auxin controls gravitropic setpoint angle in higher plant lateral branches. Curr. Biol. 23, 1497-1504 (2013).
47. Quinby, J. R. & Karper, R. E. Inheritance of height in sorghum. Agron. J. 46, 211-216 (1954).
48. Hadley, H. H. An analysis of variation in height in sorghum. Agron. J. 49, 144-147 (1957).
49. Quinby, J. R. Sorghum Improvement and the Genetics of Growth (Texas A&M University Press, College Station, TX, 1974).
50. Smith, C. W. & Frederiksen, R. A. Sorghum: Origin, history, technology, and production, 191-223 (John Wiley & Sons, New York, 2000).
51. Klein, R. R. et al. Effect of tropical sorghum conversion and inbred development on genome diversity as revealed by high-resolution genotyping. Crop Sci. 48, S12-S26 (2008). (Pubitemid 351569249)
52. Brown, P. J., Rooney, W. L., Franks, C. & Kresovich, S. Efficient mapping of plant height quantitative trait loci in a sorghum association population with introgressed dwarfing genes. Genetics 180, 629-637 (2008).
53. Appleford, N. E. et al. Decreased shoot stature and grain a-amylase activity following ectopic expression of a gibberellin 2-oxidase gene in transgenic wheat. J. Exp. Bot. 58, 3213-3226 (2007). (Pubitemid 350060413)
54. Ueguchi-Tanaka, M. et al. GIBBERELLIN INSENSITIVE DWARF1 encodes a soluble receptor for gibberellin. Nature 437, 693-698 (2005). (Pubitemid 41486533)
55. Yonemaru, J. et al. Development of genome-wide simple sequence repeat markers using whole-genome shotgun sequences of sorghum (Sorghum bicolor (L.) Moench). DNA Res. 16, 187-193 (2009).
56. Miura, K. et al. A metastable DWARF1 epigenetic mutant affecting plant stature in rice. Proc. Natl. Acad. Sci. USA 106, 11218-11223 (2009).
57. Hiei, Y. & Komari, T. Agrobacterium-mediated transformation of rice using immature embryos or calli induced from mature seed. Nat. Protoc. 3, 824-834 (2008). (Pubitemid 351639026)
58. Paterson, A. H. et al. The Sorghum bicolor genome and the diversification of grasses. Nature 457, 551-556 (2009).
59. Chomczynski, P. & Sacchi, N. Single-step method of RNA isolation by acid guanidinium thiocyanate-phenol-chloroform extraction. Anal. Biochem. 162, 156-159 (1987). (Pubitemid 17064313)
60. Mizuno, H. et al. Global transcriptome analysis reveals distinct expression among duplicated genes during sorghum-Bipolaris sorghicola interaction. BMC Plant Biol. 12, 121 (2012).