Molecular and phylogenetic characterization based on the complete genome of a virulent pathotype of Newcastle disease virus isolated in the 1970s in Brazil

Infection, Genetics and Evolution

Volumn 26, Issue , 2014, Pages 160-167

  Fernandes, Camila C ^a   Varani, Alessandro M ^a   Lemos, Eliana G M ^a   de Miranda, Vitor Fernandes O ^a   Silva, Ketherson R ^a   Fernando, Filipe S ^a   Montassier, Maria F S ^a   Montassier, Helio J ^a  

^a SÃO PAULO STATE UNIVERSITY UNESP   (Brazil)

Author keywords

APMV 1; Complete genome; Newcastle disease virus; Phylogenetic analysis; Virulent strain

Indexed keywords

HYBRID PROTEIN; VIRUS PROTEIN;

AMINO ACID SEQUENCE; ARTICLE; CONTROLLED STUDY; EPIDEMIC; EVOLUTION; GENETIC SIMILARITY; GENOTYPE; HN GENE; MOLECULAR BIOLOGY; NEWCASTLE DISEASE; NEWCASTLE DISEASE PARAMYXOVIRUS; NONHUMAN; NUCLEOTIDE SEQUENCE; PATHOGENESIS; PHYLOGENY; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN CONTENT; UNINDEXED SEQUENCE; VIRUS GENE; VIRUS GENOME; VIRUS ISOLATION; VIRUS STRAIN; VIRUS VIRULENCE; ANIMAL; BIOLOGY; BRAZIL; CHEMISTRY; CHICKEN; CLASSIFICATION; GENETICS; HISTORY; ISOLATION AND PURIFICATION; MOLECULAR EVOLUTION; MOLECULAR GENETICS; NEWCASTLE DISEASE VIRUS; VIROLOGY; VIRULENCE;

ANIMALS; BRAZIL; CHICKENS; COMPUTATIONAL BIOLOGY; DISEASE OUTBREAKS; EVOLUTION, MOLECULAR; GENOME, VIRAL; GENOTYPE; HISTORY, 20TH CENTURY; MOLECULAR SEQUENCE DATA; NEWCASTLE DISEASE; NEWCASTLE DISEASE VIRUS; PHYLOGENY; VIRAL PROTEINS; VIRULENCE;

EID: 84902356040     PISSN: 15671348     EISSN: 15677257     Source Type: Journal    
DOI: 10.1016/j.meegid.2014.05.014     Document Type: Article

References (61)

1. Absalón A.E., Matías-Mariano A., Vásquez-Márquez A., Morales-Garzón A., Cortés-Espinosa D.V., Ortega-García R., Lucio-Decanini E. Complete genome sequence of a velogenic Newcastle disease virus isolated in Mexico. Virus Genes 2012, 45(2):304-310.
2. Alexander D. A review of avian influenza in different bird species. Vet. Microbiol. 2000, 74(1-2):3-13.
3. Alexander D.J. Newcastle disease virus, other avian Paramyxoviruses, and Pneumovirus infections. Disease of Poultry 2003, Iowa State University Press, Ames, IA. 11th ed.
4. Alexander D.J., Senne D.A. Newcastle disease, other avian paramyxovirus, and pneumovirus infections. Diseases of Poultry 2008, 75-116. Iowa State University Press, Ames. Y.M. Saif, A.M. Fadly, J.R. Glisson, L.R. McDougald, L.K. Nolan, D.E. Swayne (Eds.).
5. Ballagi-Pordany A., Wehman E., Herczeg J., Belák S., Lomniczi B. Identification and grouping of Newcastle disease virus strains by restriction site analysis of a region from the F gene. Arc. Virol. 1996, 141(2):243-261.
6. Campioni J.M., Martins G.R.V., Schmidt E.M.S., Paulillo A.C., Carrasco A.O.T., Testi A.J.P. Relevance of Chinese goose (Anser cygnoides) in experimental epidemiology of Newcastle disease. Braz. J. Vet. Pathol. 2012, 5(2):47-50.
7. Carrasco A.O.T., Seki M.C., Raso T.F., Paulillo A.C., Pinto A.A. Experimental infection of Newcastle disease virus in pigeons (Columbia livia): humoral antibody response, contact transmission and viral genome shedding. Vet. Microbiol. 2008, 129(1-2):89-96.
8. Chen L., Gorman J.J., McKimm-Breschkin J., Lawrence L.J., Tulloch P.A., Smith B.J., Colman P.M., Lawrence M.C. The structure of the fusion glycoprotein of Newcastle disease virus suggests a novel paradigm for the molecular mechanism of membrane fusion. Structure 2001, 9(3):255-266.
9. Connaris H., Takimoto T., Russell R., Crennell S., Moustafa I., Portner A., Taylor G. Probing the sialic acid binding site of the hemagglutinin-neuraminidase of Newcastle disease virus: identification of key amino acid involved in cell binding, catalysis, and fusion. J. Virol. 2002, 76(4):1816-1824.
10. Courtney S.C., Susta L., Gomez D., Hines N.L., Pedersen J.C., Brown C.C., Miller P.J., Afonso C.L. Highly divergent virulent isolates of Newcastle disease virus from the Dominican Republic are members of a new genotype that may have evolved genotype that may have evolved. J. Clin. Microbiol. 2013, 51(2):508-517.
11. Crennell S., Takimoto T., Portner A., Taylor G. Crystal structure of the multifunctional paramyxovirus hemagglutinin-neuraminidase. Nat. Struct. Biol. 2000, 7(11):1068-1074.
12. Czeglédi A., Herczeg J., Hadjiev G., Doumanova L., Wehmann E., Lomniczi B. The occurrence of five major Newcastle disease virus genotypes (II-VI and VIIb) in Bulgaria between 1959 and 1996. Epidemiol. Infec. 2002, 129(3):679-688.
13. Czeglédi A., Ujvári D., Somogyi E., Wehmann E., Werner O., Lomniczi B. Third genome size category of avian paramyxovirus serotype 1 (Newcastle disease virus) and evolutionary implications. Virus Res. 2006, 120(1-2):36-48.
14. Darriba D., Taboada G.L., Doallo R., Posada D. JModelTest 2: more models, new heuristics and parallel computing. Nat. Methods 2012, 9(8):772.
15. Denadai J., Paulillo A.C., Martins G.R.V., Schimidt E.M.S., Carrasco A.T. Relevance of Budgerigars (Melopsittacus undulatus) in experimental epidemiology of Newcastle Disease. Inter. J. Poult. Sci. 2011, 10(9):691-693.
16. Diel D.G., Silva L.H.A., Liu H., Wang Z., Miller P., Afonso C.L. Genetic diversity of avian paramyxovirus type 1: proposal for a unified nomenclature and classification system of Newcastle disease vírus genotypes. Infect. Genet. Evol. 2012, 12(8):1770-1779.
17. Diel D.G., Susta L., Garcia S.C., Killian M., Brown C.C., Miller P.J., Afonso C.L. Complete genome and clinicophatological characterization of virulent Newcastle disease virus isolate from South America. J. Clin. Microbiol. 2012, 50(2):378-387.
18. Flores M.L., Segabinazi S.D., Santos H.F., Bassan J.D.L. Epidemiologia da Doença de Newcastle - Revisão Bibliográfica. Hora Vet. 2006, 26:57-61.
19. Garcia S.C., Lopez R.N., Morales R., Olvera M.A., Marquez M.A., Merino R., Miller P.J., Afonso C.L. Molecular epidemiology of Newcastle disease virus in Mexico and the potential spillover of viruses from poultry into wild bird species. Appl. Environ. Microbiol. 2013, 79(16):4985-4992.
20. Gravel K.A., Morrison T.G. Interacting domains of the HN and F proteins of Newcastle disease virus. J. Virol. 2003, 77(20):11040-11049.
21. Kattenbelt J.A., Meers J., Gould A.R. Genome sequence of the termostable Newcastle disease vírus (strain I-2) reveals possible phenotypic locus. Vet. Microbiol. 2006, 114(1-2):134-141.
22. Lamb R.A., Lolakofsky D. Paramyxovidae: The viruses and their replication. Fundamental Virology 1996, 1177-1204. Lipincott-Raven Press, Philadelphia, New York. B.N. Fields, D.M. Knipe, P.M. Howley (Eds.).
23. Lamb R.A., Collins P.L., Kolakofsky D., Melero J.A., Nagai Y., Oldstone M.B.A., Pringle C.R., Rima B.K. Paramyxoviridae. Virus Taxonomy 2005, 655-668. Elsevier, Amsterdam. C.M. Fauquet, M.A. Mayo, J. Maniloff, U. Desselberger, L.A. Ball (Eds.).
24. Li Z., Sergel E., Razvi T., Morrison J. Effect of cleavage mutants on syncytium formation directed by the wild-type fusion protein of Newcastle disease virus. J. Virol. 1998, 72(5):3789-3795.
25. Lima F.S., Santin E., Paulillo A.C., Doretto Junior L. Evaluation of different programs of Newcastle disease vaccination in Japanese quail (Coturnix coturnix japonica). Int. J. Poul. Sci. 2004, 3(5):354-356.
26. Liu X.F., Wan H.Q., Ni X.X., Wu Y.T., Liu W.B. Pathotypical and genotypical characterization of strains of Newcastle disease virus isolated from outbreaks in chicken and goose flocks in some regions of China during 1985-2001. Arc. Virol. 2003, 148(7):1387-1403.
27. Lomniezi B., Wehmann E., Herczeg J., Ballagi-Pordany A., Kaleta E.F., Werner O., Meulemans G., Jorgensen P.H., Manté A.P., Gielkens A.L., Capua I., Damoser J. Newcastle disease outbreaks in recent years in Western Europe were caused by an old (VI) and a novel genotype (VII). Arc. Virol. 1998, 143(1):49-64.
28. Martins G.R.V., Paulillo A.C., Schmidt E.M.S., Denadai J., Carrasco A.T., Santos I.F.C. Relevance of Lovebirds (Agapornis roseicollis Selby, 1836) in experimental epidemiology of Newcastle disease. Inter. J. Poul. Sci. 2012, 11(5):338-340.
29. Miller P.J., Decanini E.L., Afonso C.L. Newcastle disease: evolution of genotypes and the related challenges. Infect. Genet. Evol. 2010, 10(1):26-35.
30. Miller P.J., Estevez C., Yu Q., Suarez D.L., King D.J. Comparison of viral shedding following vaccination with wild-type and recombinant viruses. Avian Dis. 2009, 53(1):39-49.
31. Miller P.J., Kim L.M., Ip H.S., Afonso C.L. Evolutionary dynamics of Newcastle disease virus. Virololgy 2009, 391(1):64-72.
32. Nishizawa M., Paulillo A.C., Nakaghi L.S.O., Nunes A.D., Campioni J.M., Doretto Júnior L. Newcastle disease in white Pekin ducks: response to experimental vaccination and challenge. Braz. J. Poul. Sci. 2007, 9(2):123-125.
33. OIE Manual of diagnostic tests and vaccines for terrestrial animals 2012, World Organization for Animal Health, Paris, France.
34. OIE Newcastle disease. OIE Manual of Standards for Diagnostics Tests and Vaccines, in Manual of Diagnostic Tests and Vaccines for Terrestrial Animals: Mammals, Birds and Bees 2009, 576-589. Office International des Epizootics, Paris, Chapter 2.3.14.
35. Oliveira Júnior J.G., Portz C., Loureiro B.O., Schiavo P.A., Fedullo L.P.L., Mazur C., Andrade C.M. Vírus da doença de Newcastle em aves não vacinadas no Estado do Rio de Janeiro. Ciênc. Rural 2003, 33(2):381-382.
36. Oliveira Júnior J.G., Schiavo P.A., Doretto Júnior L., Orsi M.A., Mazur C., Andrade C.M. Isolation and biological characterization of JAP99 Newcastle disease virus isolated from domestic ducks (Neta sp) in Rio de Janeiro State. Ciênc. Rural 2005, 35(4):948-951.
37. Orsi M.A., Doretto L., Camillo S.C.A., Reischak D., Ribeiro S.A.M., Ramazzoti A., Mendonça A.O., Spilki F.R., Buzinaro M.G., Ferreira H.L., Arns C.W. A survey for maintenance of virulent Newcastle disease virus-free area in poultry production in Brazil. Braz. J. Microbiol. 2010, 41(2):368-375.
38. Panda A., Elankumaran S., Krisnamurthy S., Huang Z., Samal S.K. Loss of N-linked glycosylation from the hemagglutinin-neuraminidase protein alters virulence of Newcastle disease virus. J. Virol. 2004, 78(10):4965-4975.
39. Paulillo A.C., Silva G.S., Doretto Júnior L., Gama N.M.S.Q., Nishizawa M., Schocken-Iturrino F. Importância das perdizes (Rhynchotus rufescens) como fonte potencial de vírus patogênico da doença de newcastle para aves domésticas. Arq. Inst. Biol. (online) 2005, 72(3):313-317.
40. Peeters B.P.H., Leeuw O.S., Koch G., Gielkens A.L.J. Rescue of Newcastle disease virus from cloned cDNA: evidence that cleavability of the fusion protein is a major determinant for virulence. J. Virol. 1999, 73(6):5001-5009.
41. Perozo F., Merino R., Afonso C.L., Villegas P., Calderon N. Biological and phylogenetic characterization of virulent Newcastle disease virus circulating in Mexico. Avian Dis. 2008, 52(3):472-479.
42. Rott R., Klenk H.D. Molecular basis of infectivity and pathogenicity of Newcastle disease virus. Newcastle disease 1988, 98-112. Kluwer Academic Publishers, Boston. D.J. Alexander (Ed.).
43. Samson A.C.R. Virus structure. Newcastle Disease 1988, 23-44. Kluwer Academic Publisher, Boston. D.J. Alexander (Ed.).
44. Santos J.A. A ocorrência da doença de Newcastle no Brasil (nota prévia). Rev. de Prod. Anim. 1954, 1(1):5-12.
45. Scal B.S. Nucleotide and predicted amino acid sequence analysis of the fusion protein and hemagglutinin-neuraminidase protein genes among Newcastle disease virus isolates. Phylogenetics relationship among the Paramyxovirinae based on attachment glycoprotein sequences. Funct. Integr. Genomics 2004, 4(4):246-257.
46. Silva J.S.A., Mota R.A., Vilela S.M.O., Doretto Júnior L., Pinheiro Júnior J.W., Silva L.B.G. Newcastle Disease virus infection in sparrows (Passer domesticus, Linneaus, 1758) captured in poultry farms of the agreste region on the state of Pernanbuco. Braz. J. Poul. Sci. 2006, 8(2):125-129.
47. Sinkovies J.G., Horvath J.C. Newcastle disease virus (NDV): a brief history of its oncolytic strains. J. Clin. Virol. 2000, 16(1):1-15.
48. Snoeck C.J., Owoade A.A., Couacy-Hymann E., Alkali B.R., Okwen M.P., Adeyanju A.T., Komoyo G.F., Nakouné E., Le Faou A., Muller C.P. High genetic diversity of Newcastle disease virus in poultry in West and Central Africa: cocirculation of genotype XIV and newly defined genotypes XVII and XVIII. J. Clin. Microbiol. 2013, 51(7):2250-2260.
49. Sousa R.L.M., Montassier H.J., Pinto A.A. Detection and quantification of antibodies to Newcastle disease virus in ostrich and rhea sera using a liquid phase blocking enzyme-linked immunosorbent assay. Clin. Diagn. Lab. Immunol. 2000, 7(6):940-944.
50. Steward M., Vipond I.B., Millar N.S., Emmerson P.T. RNA editing in Newcastle disease virus. J. Gen. Virol. 1993, 74:2539-2547.
51. Susta L., Hamal K.R., Miller P.J., Cardenas-Garcia S., Brown C.C., Pedersen J.C., Gongora V., Afonso C.L. Separate evolution of virulent Newcastle disease viruses from Mexico and Central America. J. Clin. Microbiol. 2014, 52(5):1382-1390.
52. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 2011, 28(10):2731-2739.
53. Tavaré S. Some probabilistic and statistical problems in the analysis of DNA sequences. Lect. Math. Life Sci. 1986, 17:57-86.
54. Thompson I.D., Higgins D.G., Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 1994, 22(22):4673-4680.
55. Toyoda T., Sakaguchi T., Imai K., Inocencio N.M., Gotoh B., Hamaguchi M., Nagai Y. Structural comparison of the cleavage-activation site of the fusion glycoprotein between virulent and avirulent strains of Newcastle disease virus. Virology 1987, 158(1):242-247.
56. Walker J.W., Heron B.R., Mixon M.A. Exotic Newcastle disease eradication program in the United States. Avian Dis. 1973, 17(3):486-503.
57. Wehmann E., Ujvári D., Mazija H., Velhner M., Ciglar-Grozdanie I., Savic V., Jermolenko G., Cac Z., Prukner-Radovcic E., Lomniczi B. Genetic analysis of Newcastle disease virus strains isolated in Bosnia-Herzegovina, Croatia, Slovenia and Yugoslavia, reveals the presence of only a single genotype, V, between 1979 and 2002. Vet. Microbiol. 2003, 94(4):269-281.
58. Wise M.G., Sellers H.S., Alvarez R., Seal B.S. RNA-dependent RNA polymerase gene analysis of worldwide Newcastle disease virus isolates representing different virulence types and their phylogenetic relationship with other members of the paramyxoviridae. Virus Res. 2004, 104(1):71-80.
59. Yu L., Wang Z., Jiang Y., Chang L., Kwang J. Characterization of newly emerging Newcastle disease virus isolates from the People's Republic of China and Taiwan. J. Clin. Microbiol. 2001, 39(10):3512-3519.
60. Yusoff K., Nesbit M., Samson A.C.R., Emmerson P.T. Location of epitopes within the haemagglutinin-neuraminidase (HN) protein of Newcastle disease virus by sequencing the HN genes of monoclonal antibody-resistant mutants. Virus Res. 1988, 11. 12-12.
61. Yusoff K., Nesbit M., McCartney H., Meulemans G., Alexander D.J., Collins M.S., Emmerson P.T., Samson A.C. Location of neutralizing epitopes on the fusion protein of Newcastle disease virus strain Beaudette C. J. Gen. Virol. 1989, 70(Pt 11):3105-3109.