High genetic diversity of newcastle disease virus in poultry in west and central Africa: Cocirculation of genotype XIV and newly defined genotypes XVII and XVIII

Journal of Clinical Microbiology

Volumn 51, Issue 7, 2013, Pages 2250-2260

  Snoeck, Chantal J ^a   Owoade, Ademola A ^b   Couacy Hymann, Emmanuel ^c   Alkali, Bello R ^d   Okwen, Mbah P ^e   Adeyanju, Adeniyi T ^b,f   Komoyo, Giscard F ^g   Nakouné, Emmanuel ^g   Le Faou, Alain ^h   Muller, Claude P ^a  

^a LABORATOIRE NATIONAL DE SANTÉ   (Luxembourg)

^b UNIVERSITY OF IBADAN   (Nigeria)

^c Central Laboratory for Animal Diseases   (Côte d’Ivoire)

^d USMANU DANFODIYO UNIVERSITY   (Nigeria)

^e District Hospital Bali   (Cameroon)

^f UNIVERSITY OF JOS   (Nigeria)

^g INSTITUT PASTEUR DE BANGUI   (Central African Republic)

^h UNIVERSITÉ DE LORRAINE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

EPITOPE; VIRUS FUSION PROTEIN; VIRUS RNA;

ARTICLE; CAMEROON; CENTRAL AFRICA; CONTROLLED STUDY; COTE D'IVOIRE; GENETIC VARIABILITY; GENOTYPE; GEOGRAPHIC DISTRIBUTION; NEWCASTLE DISEASE PARAMYXOVIRUS; NIGERIA; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; POLYMERASE CHAIN REACTION; POULTRY; PRIORITY JOURNAL; PROTEIN MODIFICATION; UBIQUITINATION; VIRUS STRAIN; VIRUS VIRULENCE; AFRICA; ANIMAL; CLASSIFICATION; CLUSTER ANALYSIS; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; MOLECULAR GENETICS; NEWCASTLE DISEASE; NEWCASTLE DISEASE VIRUS; VIROLOGY;

AVES; NEWCASTLE DISEASE VIRUS;

AFRICA, CENTRAL; AFRICA, WESTERN; ANIMALS; CLUSTER ANALYSIS; GENETIC VARIATION; GENOTYPE; MOLECULAR SEQUENCE DATA; NEWCASTLE DISEASE; NEWCASTLE DISEASE VIRUS; PHYLOGENY; POULTRY; RNA, VIRAL; SEQUENCE ANALYSIS, DNA; VIRAL FUSION PROTEINS;

EID: 84879448903     PISSN: 00951137     EISSN: 1098660X     Source Type: Journal    
DOI: 10.1128/JCM.00684-13     Document Type: Article

References (62)

1. Bebay C-E. 2006. Première évaluation de la structure et de l'importance du secteur avicole commercial et familial en Afrique de l'Ouest. Synthèse des rapports nationaux. FAO, Rome, Italy. http://www.fao.org/ docs/eims/upload/213782/agal-poultrysector-westafrica-jun06-fr.pdf.
2. Mayo MA. 2002. Virus taxonomy-Houston 2002. Arch. Virol. 147: 1071-1076.
3. Steward M, Vipond IB, Millar NS, Emmerson PT. 1993. RNA editing in Newcastle disease virus. J. Gen. Virol. 74:2539-2547.
4. Lamb RA, Parks GD. 2007. Paramyxoviridae: the viruses and their replication, p 1449-1496. In Knipe DM, Howley PM (ed), Fields virology. Lippincott Williams and Wilkins, Philadelphia, PA.
5. Meulemans G, Gonze M, Carlier MC, Petit P, Burny A, Long L. 1986. Protective effects of HN and F glycoprotein-specific monoclonal antibodies on experimental Newcastle disease. Avian Pathol. 15:761-768.
6. Huang Y, Wan HQ, Liu HQ, Wu YT, Liu XF. 2004. Genomic sequence of an isolate of Newcastle disease virus isolated from an outbreak in geese: a novel six nucleotide insertion in the non-coding region of the nucleoprotein gene. Arch. Virol. 149:1445-1457.
7. Czegledi A, Ujvari D, Somogyi E, Wehmann E, Werner O, Lomniczi B. 2006. Third genome size category of avian paramyxovirus serotype 1 (Newcastle disease virus) and evolutionary implications. Virus Res. 120: 36-48.
8. Courtney SC, Susta L, Gomez D, Hines NL, Pedersen JC, Brown CC, Miller PJ, Afonso CL. 2013. Highly divergent virulent isolates of Newcastle disease virus from the Dominican Republic are members of a new genotype that may have evolved unnoticed for over 2 decades. J. Clin. Microbiol. 51:508-517.
9. Diel DG, da Silva LH, Liu H, Wang Z, Miller PJ, Afonso CL. 2012. Genetic diversity of avian paramyxovirus type 1: proposal for a unified nomenclature and classification system of Newcastle disease virus genotypes. Infect. Genet. Evol. 12:1770-1779.
10. Ballagi-Pordany A, Wehmann E, Herczeg J, Belak S, Lomniczi B. 1996. Identification and grouping of Newcastle disease virus strains by restriction site analysis of a region from the F gene. Arch. Virol. 141:243-261.
11. Aldous EW, Mynn JK, Banks J, Alexander DJ. 2003. A molecular epidemiological study of avian paramyxovirus type 1 (Newcastle disease virus) isolates by phylogenetic analysis of a partial nucleotide sequence of the fusion protein gene. Avian Pathol. 32:239-256.
12. OIE. 2012. Newcastle disease. In Manual of diagnostic tests and vaccines for terrestrial animals. OIE, Paris, France. http://www.oie.int/fileadmin/Home/ eng/Health-standards/tahm/2.03.14-NEWCASTLE-DIS.pdf.
13. Morrison T, McQuain C, Sergel T, McGinnes L, Reitter J. 1993. The role of the amino terminus of F1 of the Newcastle disease virus fusion protein in cleavage and fusion. Virology 193:997-1000.
14. Collins MS, Bashiruddin JB, Alexander DJ. 1993. Deduced amino acid sequences at the fusion protein cleavage site of Newcastle disease viruses showing variation in antigenicity and pathogenicity. Arch. Virol. 128:363-370.
15. Nagai Y, Klenk HD, Rott R. 1976. Proteolytic cleavage of the viral glycoproteins and its significance for the virulence of Newcastle disease virus. Virology 72:494-508.
16. Solomon P, Bisschop S, Joannis TM, Shittu I, Meseko C, Sulaiman L, Gado D, Oladokun AT, Olawuyi KA, Abolnik C. 2012. Phylogenetic analysis of Newcastle disease viruses isolated from asymptomatic guinea fowls (Numida meleagris) and Muscovy ducks (Cariana moscata) in Nigeria. Trop. Anim. Health Prod. 45:53-57.
17. Echeonwu GO, Iroegbu CU, Emeruwa AC. 1993. Recovery of velogenic Newcastle disease virus from dead and healthy free-roaming birds in Nigeria. Avian Pathol. 22:383-387.
18. Haruna ES, Shamaki D, Echeonwu GO, Majiyagbe KA, Shuaibu Y, Du DR. 1993. A natural outbreak of Newcastle disease in guinea-fowl (Numida meleagris galeata) in Nigeria. Rev. Sci. Tech. 12:887-893.
19. Snoeck CJ, Ducatez MF, Owoade AA, Faleke OO, Alkali BR, Tahita MC, Tarnagda Z, Ouedraogo JB, Maikano I, Mbah PO, Kremer JR, Muller CP. 2009. Newcastle disease virus in West Africa: new virulent strains identified in non-commercial farms. Arch. Virol. 154:47-54.
20. Cattoli G, Fusaro A, Monne I, Molia S, Le Menach A, Maregeya B, Nchare A, Bangana I, Maina AG, Koffi JN, Thiam H, Bezeid OE, Salviato A, Nisi R, Terregino C, Capua I. 2010. Emergence of a new genetic lineage of Newcastle disease virus in West and Central Africa-implications for diagnosis and control. Vet. Microbiol. 142:168-176.
21. WHO. 2002. WHO manual on animal influenza diagnosis and surveillance. WHO, Geneva, Switzerland. http://www.who.int/vaccine-research/diseases/ influenza/WHO-manual-on-animal-diagnosis-and-surveillance-2002-5.pdf.
22. Kho CL, Mohd-Azmi ML, Arshad SS, Yusoff K. 2000. Performance of an RT-nested PCR ELISA for detection of Newcastle disease virus. J. Virol. Methods 86:71-83.
23. Thompson JD, Higgins DG, Gibson TJ. 1994. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22:4673-4680.
24. Martin DP, Lemey P, Lott M, Moulton V, Posada D, Lefeuvre P. 2010. RDP3: a flexible and fast computer program for analyzing recombination. Bioinformatics 26:2462-2463.
25. Chong YL, Padhi A, Hudson PJ, Poss M. 2010. The effect of vaccination on the evolution and population dynamics of avian paramyxovirus-1. PLoS Pathog. 6:e1000872. doi:10.1371/journal.ppat.1000872.
26. Milne I, Lindner D, Bayer M, Husmeier D, McGuire G, Marshall DF, Wright F. 2009. TOPALi v2: a rich graphical interface for evolutionary analyses of multiple alignments on HPC clusters and multi-core desktops. Bioinformatics 25:126-127.
27. Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S. 2011. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol. Biol. Evol. 28:2731-2739.
28. Couacy-Hymann E, Kouakou VA, Aplogan GL, Awoume F, Kouakou CK, Kakpo L, Sharp BR, McClenaghan L, McKenzie P, Webster RG, Webby RJ, Ducatez MF. 2012. Surveillance for influenza viruses in poultry and swine, west Africa, 2006-2008. Emerg. Infect. Dis. 18:1446-1452.
29. Das A, Spackman E, Senne D, Pedersen J, Suarez DL. 2006. Development of an internal positive control for rapid diagnosis of avian influenza virus infections by real-time reverse transcription-PCR with lyophilized reagents. J. Clin. Microbiol. 44:3065-3073.
30. Samuel A, Nayak B, Paldurai A, Xiao S, Aplogan GL, Awoume KA, Webby RJ, Ducatez MF, Collins PL, Samal SK. 2013. Phylogenetic and pathotypic characterization of Newcastle disease viruses circulating in West Africa and the efficacy of a current vaccine. J. Clin. Microbiol. 51: 771-781.
31. Fringe R, Bosman AM, Ebersohn K, Bisschop S, Abolnik C, Venter E. 2012. Molecular characterisation of Newcastle disease virus isolates from different geographical regions in Mozambique in 2005. Onderstepoort J. Vet. Res. 79:E1-E7.
32. Herczeg J, Wehmann E, Bragg RR, Travassos Dias PM, Hadjiev G, Werner O, Lomniczi B. 1999. Two novel genetic groups (VIIb and VIII) responsible for recent Newcastle disease outbreaks in Southern Africa, one (VIIb) of which reached Southern Europe. Arch. Virol. 144:2087-2099.
33. Abolnik C, Horner RF, Bisschop SP, Parker ME, Romito M, Viljoen GJ. 2004. A phylogenetic study of South African Newcastle disease virus strains isolated between 1990 and 2002 suggests epidemiological origins in the Far East. Arch. Virol. 149:603-619.
34. Abolnik C. 2007. Molecular epidemiology of Newcastle disease and avian influenza in South Africa. Ph.D. thesis. University of Pretoria, Pretoria, South Africa.
35. Hassan W, Khair SA, Mochotlhoane B, Abolnik C. 2010. Newcastle disease outbreaks in the Sudan from 2003 to 2006 were caused by viruses of genotype 5d. Virus Genes 40:106-110.
36. Solomon P, Abolnik C, Joannis TM, Bisschop S. 2012. Virulent Newcastle disease virus in Nigeria: identification of a new clade of sublineage 5f from livebird markets. Virus Genes 44:98-103.
37. Van Borm S, Obishakin E, Joannis T, Lambrecht B, van den Berg T. 2012. Further evidence for the widespread co-circulation of lineages 4b and 7 velogenic Newcastle disease viruses in rural Nigeria. Avian Pathol. 41:377-382.
38. Neyt C, Geliebter J, Slaoui M, Morales D, Meulemans G, Burny A. 1989. Mutations located on both F1 and F2 subunits of the Newcastle disease virus fusion protein confer resistance to neutralization with monoclonal antibodies. J. Virol. 63:952-954.
39. Toyoda T, Gotoh B, Sakaguchi T, Kida H, Nagai Y. 1988. Identification of amino acids relevant to three antigenic determinants on the fusion protein of Newcastle disease virus that are involved in fusion inhibition and neutralization. J. Virol. 62:4427-4430.
40. Iorio RM, Syddall RJ, Sheehan JP, Bratt MA, Glickman RL, Riel AM. 1991. Neutralization map of the hemagglutinin-neuraminidase glycoprotein of Newcastle disease virus: domains recognized by monoclonal antibodies that prevent receptor recognition. J. Virol. 65:4999-5006.
41. McGinnes LW, Morrison TG. 1995. The role of individual oligosaccharide chains in the activities of the HN glycoprotein of Newcastle disease virus. Virology 212:398-410.
42. Samal S, Khattar SK, Kumar S, Collins PL, Samal SK. 2012. Coordinate deletion of N-glycans from the heptad repeats of the fusion F protein of Newcastle disease virus yields a hyperfusogenic virus with increased replication, virulence, and immunogenicity. J. Virol. 86: 2501-2511.
43. McGinnes L, Sergel T, Reitter J, Morrison T. 2001. Carbohydrate modifications of the NDV fusion protein heptad repeat domains influence maturation and fusion activity. Virology 283:332-342.
44. Kim SH, Nayak S, Paldurai A, Nayak B, Samuel A, Aplogan GL, Awoume KA, Webby RJ, Ducatez MF, Collins PL, Samal SK. 2012. Complete genome sequence of a novel Newcastle disease virus strain isolated from a chicken in West Africa. J. Virol. 86:11394-11395.
45. Mohamed MH, Kumar S, Paldurai A, Megahed MM, Ghanem IA, Lebdah MA, Samal SK. 2009. Complete genome sequence of a virulent Newcastle disease virus isolated from an outbreak in chickens in Egypt. Virus Genes 39:234-237.
46. Otim MO, Christensen H, Jorgensen PH, Handberg KJ, Bisgaard M. 2004. Molecular characterization and phylogenetic study of Newcastle disease virus isolates from recent outbreaks in eastern Uganda. J. Clin. Microbiol. 42:2802-2805.
47. Maminiaina OF, Gil P, Briand FX, Albina E, Keita D, Andriamanivo HR, Chevalier V, Lancelot R, Martinez D, Rakotondravao R, Rajaonarison JJ, Koko M, Andriantsimahavandy AA, Jestin V, Servan de Almeida R. 2010. Newcastle disease virus in Madagascar: identification of an original genotype possibly deriving from a died out ancestor of genotype IV. PLoS One 5:e13987. doi:10.1371/journal. pone.0013987.
48. Okwor EC, Eze DC. 2011. Epizootic Newcastle disease virus in local chickens reared in South East Savannah zone of Nigeria. Int. J. Poultry Sci. 10:212-215.
49. Miguel E, Grosbois V, Berthouly-Salazar C, Caron A, Cappelle J, Roger F. 2012. A meta-analysis of observational epidemiological studies of Newcastle disease in African agro-systems, 1980-2009. Epidemiol. Infect. 11: 1-17.
50. Servan de Almeida R, Maminiaina OF, Gil P, Hammoumi S, Molia S, Chevalier V, Koko M, Andriamanivo HR, Traore A, Samake K, Diarra A, Grillet C, Martinez D, Albina E. 2009. Africa, a reservoir of new virulent strains of Newcastle disease virus? Vaccine 27:3127-3129.
51. Kapczynski DR, King DJ. 2005. Protection of chickens against overt clinical disease and determination of viral shedding following vaccination with commercially available Newcastle disease virus vaccines upon challenge with highly virulent virus from the California 2002 exotic Newcastle disease outbreak. Vaccine 23:3424-3433.
52. Miller PJ, King DJ, Afonso CL, Suarez DL. 2007. Antigenic differences among Newcastle disease virus strains of different genotypes used in vaccine formulation affect viral shedding after a virulent challenge. Vaccine 25:7238-7246.
53. Aldous EW, Seekings JM, McNally A, Nili H, Fuller CM, Irvine RM, Alexander DJ, Brown IH. 2010. Infection dynamics of highly pathogenic avian influenza and virulent avian paramyxovirus type 1 viruses in chickens, turkeys and ducks. Avian Pathol. 39:265-273.
54. Alexander DJ, Banks J, Collins MS, Manvell RJ, Frost KM, Speidel EC, Aldous EW. 1999. Antigenic and genetic characterisation of Newcastle disease viruses isolated from outbreaks in domestic fowl and turkeys in Great Britain during 1997. Vet. Rec. 145:417-421.
55. Alexander DJ, Manvell RJ, Banks J, Collins MS, Parsons G, Cox B, Frost KM, Speidel EC, Ashman S, Aldous EW. 1999. Experimental assessment of the pathogenicity of the Newcastle disease viruses from outbreaks in Great Britain in 1997 for chickens and turkeys, and the protection afforded by vaccination. Avian Pathol. 28:501-511.
56. Zhang S, Wang X, Zhao C, Liu D, Hu Y, Zhao J, Zhang G. 2011. Phylogenetic and pathotypical analysis of two virulent Newcastle disease viruses isolated from domestic ducks in China. PLoS One 6:e25000. doi: 10.1371/journal.pone. 0025000.
57. Seal BS, King DJ, Locke DP, Senne DA, Jackwood MW. 1998. Phylogenetic relationships among highly virulent Newcastle disease virus isolates obtained from exotic birds and poultry from 1989 to 1996. J. Clin. Microbiol. 36:1141-1145.
58. Samal S, Kumar S, Khattar SK, Samal SK. 2011. A single amino acid change, Q114R, in the cleavage-site sequence of Newcastle disease virus fusion protein attenuates viral replication and pathogenicity. J. Gen. Virol. 92:2333-2338.
59. de Leeuw OS, Koch G, Hartog L, Ravenshorst N, Peeters BP. 2005. Virulence of Newcastle disease virus is determined by the cleavage site of the fusion protein and by both the stem region and globular head of the haemagglutinin-neuraminidase protein. J. Gen. Virol. 86:1759-1769.
60. Qin ZM, Tan LT, Xu HY, Ma BC, Wang YL, Yuan XY, Liu WJ. 2008. Pathotypical characterization and molecular epidemiology of Newcastle disease virus isolates from different hosts in China from 1996 to 2005. J. Clin. Microbiol. 46:601-611.
61. Dortmans JC, Peeters BP, Koch G. 2012. Newcastle disease virus outbreaks: Vaccine mismatch or inadequate application? Vet. Microbiol. 160: 17-22.
62. Jeon WJ, Lee EK, Lee YJ, Jeong OM, Kim YJ, Kwon JH, Choi KS. 2008. Protective efficacy of commercial inactivated Newcastle disease virus vaccines in chickens against a recent Korean epizootic strain. J. Vet. Sci. 9:295-300.