Characterization of RNA binding protein RBP-P reveals a possible role in rice glutelin gene expression and RNA localization

Plant Molecular Biology

Volumn 85, Issue 4, 2014, Pages 381-394

  Doroshenk, Kelly A ^a   Tian, Li ^a   Crofts, Andrew J ^a,b   Kumamaru, Toshihiro ^c   Okita, Thomas W ^a  

^a WASHINGTON STATE UNIVERSITY   (United States)

^b AKITA INTERNATIONAL UNIVERSITY   (Japan)

^c KYUSHU UNIVERSITY   (Japan)

Author keywords

Glutelin; Rice; RNA binding protein; RNA localization; Storage protein; Zipcode

Indexed keywords

GLUTEN; PLANT RNA; RNA BINDING PROTEIN;

AMINO ACID SEQUENCE; ANIMAL; ARTICLE; GENE EXPRESSION REGULATION; GENETICS; METABOLISM; MOLECULAR GENETICS; PHYSIOLOGY; PLANT SEED; PROTEIN BINDING; PROTEIN TRANSPORT; RICE;

AMINO ACID SEQUENCE; ANIMALS; GENE EXPRESSION REGULATION, PLANT; GLUTENS; MOLECULAR SEQUENCE DATA; ORYZA SATIVA; PROTEIN BINDING; PROTEIN TRANSPORT; RNA, PLANT; RNA-BINDING PROTEINS; SEEDS;

EID: 84902303142     PISSN: 01674412     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11103-014-0191-z     Document Type: Article

References (43)

1. Biamonti G, Riva S (1994) New insights into the auxiliary domains of eukaryotic RNA binding proteins. FEBS Lett 340: 1-8.
2. Bove J, Kim CY, Gibson CA, Assmann SM (2008) Characterization of wound-responsive RNA-binding proteins and their splice variants in Arabidopsis. Plant Mol Biol 67: 71-88.
3. Choi SB, Wang C, Muench DG, Ozawa K, Franceschi VR, Wu Y, Okita TW (2000) Messenger RNA targeting of rice seed storage proteins to specific ER subdomains. Nature 407: 765-767.
4. Crofts AJ, Washida H, Okita TW, Ogawa M, Kumamaru T, Satoh H (2004) Targeting of proteins to endoplasmic reticulum-derived compartments in plants. The importance of RNA localization. Plant Physiol 136: 3414-3419.
5. Crofts AJ, Crofts N, Whitelegge JP, Okita TW (2010) Isolation and identification of cytoskeleton-associated prolamine mRNA binding proteins from developing rice seeds. Planta 231: 1261-1276.
6. Doroshenk KA, Crofts AJ, Morris RT, Wyrick JJ, Okita TW (2009) Proteomic analysis of cytoskeleton-associated RNA binding proteins in developing rice seed. J Proteome Res 8: 4641-4653.
7. Doroshenk KA, Crofts AJ, Washida H, Satoh-Cruz M, Crofts N, Sugino A, Okita TW, Morris RT, Wyrick JJ, Fukuda M, Kumamaru T, Satoh H (2010) Characterization of the rice glup4 mutant suggests a role for the small GTPase Rab5 in the biosynthesis of carbon and nitrogen storage reserves in developing endosperm. Breed Sci 60: 568-574.
8. Doroshenk KA, Crofts AJ, Washida H, Satoh-Cruz M, Crofts N, Yang Y, Morris RT, Okita TW, Fukuda M, Kumamaru T, Satoh H (2012) mRNA localization in plants and the role of RNA binding proteins. In: Lorković Z (ed) RNA binding proteins. Landes Bioscience, Austin TX, pp 95-112.
9. Dreyfuss G, Kim VN, Kataoka N (2002) Messenger-RNA-binding proteins and the messages they carry. Nat Rev Mol Cell Biol 3: 195-205.
10. Fukuda M, Sato M, Washida H, Sugino A, Crofts AJ, Okita TW, Kawagoe Y, Ogawa M, Satoh H, Kumamaru T (2011) The small GTPase Rab5a is essential for intracellular transport of glutelin precursor from Golgi apparatus and endosomal membrane organization in developing rice endosperm. Plant Physiol 157: 632-644.
11. Fukuda M, Wen L, Satoh-Cruz M, Kawagoe Y, Nagamura Y, Okita TW, Washida H, Sugino A, Ishino S, Ogawa M, Sunada M, Ueda T, Kumamaru T (2013) A guanine nucleotide exchange factor for Rab5 proteins is essential for intracellular transport of the proglutelin from the Golgi apparatus to the protein storage vacuole in rice endosperm. Plant Physiol 162: 663-674.
12. Giorgi C, Moore MJ (2007) The nuclear nurture and cytoplasmic nature of localized mRNPs. Semin Cell Dev Biol 18: 186-193.
13. Glisovic T, Bachorik JL, Yong J, Dreyfuss G (2008) RNA-binding proteins and post-transcriptional gene regulation. FEBS Lett 582: 1977-1986.
14. Graber JH, Cantor CR, Mohr SC, Smith TF (1999) In silico detection of control signals: mRNA 3′-end-processing sequences in diverse species. Proc Natl Acad Sci USA 96: 14055-14060.
15. Ham BK, Brandom JL, Xoconostle-Cázares B, Ringgold V, Lough TJ, Lucas WJ (2009) A polypyrimidine tract binding protein, pumpkin RBP50, forms the basis of a phloem-mobile ribonucleoprotein complex. Plant Cell 21: 197-215.
16. Hamada S, Ishiyama K, Choi SB, Wang C, Singh S, Kawai N, Franceschi VR, Okita TW (2003a) The transport of prolamine RNAs to prolamine protein bodies in living rice endosperm cells. Plant Cell 15: 2253-2264.
17. Hamada S, Ishiyama K, Sakulsingharoj C, Choi SB, Wu Y, Wang C, Singh S, Kawai N, Messing J, Okita TW (2003b) Dual regulated RNA transport pathways to the cortical region in developing rice endosperm. Plant Cell 15: 2265-2272.
18. Hwang SK, Nagai Y, Kim D, Okita TW (2008) Direct appraisal of the potato tuber ADP-glucose pyrophosphorylase large subunit in enzyme function by study of a novel mutant form. J Biol Chem 283: 6640-6647.
19. Jambhekar A, Derisi JL (2007) Cis-acting determinants of asymmetric, cytoplasmic RNA transport. RNA 13: 625-642.
20. Kim CY, Bove J, Assmann SM (2008) Overexpression of wound-responsive RNA-binding proteins induces leaf senescence and hypersensitive-like cell death. New Phytol 180: 57-70.
21. Krecic AM, Swanson MS (1999) hnRNP complexes: composition, structure, and function. Curr Opin Cell Biol 11: 363-371.
22. Lambermon MH, Simpson GG, Wieczorek Kirk DA, Hemmings-Mieszczak M, Klahre U, Filipowicz W (2000) UBP1, a novel hnRNP-like protein that functions at multiple steps of higher plant nuclear pre-mRNA maturation. EMBO J 19: 1638-1649.
23. Lambermon MH, Fu Y, Wieczorek Kirk DA, Dupasquier M, Filipowicz W, Lorković ZJ (2002) UBA1 and UBA2, two proteins that interact with UBP1, a multifunctional effector of pre-mRNA maturation in plants. Mol Cell Biol 22: 4346-4357.
24. Lécuyer E, Yoshida H, Krause HM (2009) Global implications of mRNA localization pathways in cellular organization. Curr Opin Cell Biol 21: 409-415.
25. Li J, Kinoshita T, Pandey S, Ng CK, Gygi SP, Shimazaki K, Assmann SM (2002) Modulation of an RNA-binding protein by abscisic-acid-activated protein kinase. Nature 418: 793-797.
26. Lorković ZJ, Barta A (2002) Genome analysis: RNA recognition motif (RRM) and K homology (KH) domain RNA-binding proteins from the flowering plant Arabidopsis thaliana. Nucleic Acids Res 30: 623-635.
27. Lorković ZJ, Wieczorek Kirk DA, Lambermon MH, Filipowicz W (2000) Pre-mRNA splicing in higher plants. Trends Plant Sci 5: 160-167.
28. Lunde BM, Moore C, Varani G (2007) RNA-binding proteins: modular design for efficient function. Nat Rev Mol Cell Biol 8: 479-490.
29. Marchand V, Gaspar I, Ephrussi A (2012) An intracellular transmission control protocol: assembly and transport of ribonucleoproteins complexes. Curr Opin Cell Biol 24: 202-210.
30. Martin KC, Ephrussi A (2009) mRNA localization: gene expression in the spatial dimension. Cell 136: 719-730.
31. Ng CK, Kinoshita T, Pandey S, Shimazaki K, Assmann SM (2004) Abscisic acid induces rapid subnuclear reorganization in guard cells. Plant Physiol 134: 1327-1331.
32. Okita TW, Hwang YS, Hnilo J, Kim WT, Aryan AP, Larsen R, Krishnan HB (1989) Structure and expression of the rice glutelin multigene family. J Biol Chem 264: 12573-12581.
33. Park SH, Chung PJ, Juntawong P, Bailey-Serres J, Kim YS, Jung H, Bang SW, Kim YK, Do Choi Y, Kim JK (2012) Posttranscriptional control of photosynthetic mRNA decay under stress conditions requires 3′ and 5′ untranslated regions and correlates with differential polysome association in rice. Plant Physiol 159: 1111-1124.
34. Pratt CA, Mowry KL (2013) Taking a cellular road-trip: mRNA transport and anchoring. Curr Opin Cell Biol 25: 99-106.
35. Reddy AS, Day IS, Gohring J, Barta A (2012) Localization and dynamics of nuclear speckles in plants. Plant Physiol 158: 67-77.
36. Riera M, Redko Y, Leung J (2006) Arabidopsis RNA-binding protein UBA2a relocalizes into nuclear speckles in response to abscisic acid. FEBS Lett 580: 4160-4165.
37. Sami-Subbu R, Muench DG, Okita TW (2000) A cytoskeleton-associated RNA-binding protein binds to the untranslated regions of prolamine mRNA and to poly(A). Plant Sci 152: 115-122.
38. St. Johnston D (2005) Moving messages: the intracellular localization of mRNAs. Nat Rev Mol Cell Biol 6: 363-375.
39. Wang C, Washida H, Crofts AJ, Hamada S, Katsube-Tanaka T, Kim D, Choi SB, Modi M, Singh S, Okita TW (2008) The cytoplasmic-localized, cytoskeletal-associated RNA binding protein OsTudor-SN: evidence for an essential role in storage protein RNA transport and localization. Plant J 55: 443-454.
40. Washida H, Kaneko S, Crofts N, Sugino A, Wang C, Okita TW (2009a) Identification of cis-localization elements that target glutelin RNAs to a specific subdomain of the cortical endoplasmic reticulum in rice endosperm cells. Plant Cell Physiol 50: 635-643.
41. Washida H, Sugino A, Kaneko S, Crofts N, Sakulsingharoj C, Kim D, Choi SB, Hamada S, Ogawa M, Wang C, Esen A, Higgins TJ, Okita TW (2009b) Identification of cis-localization elements of the maize 10-kDa delta-zein and their use in targeting RNAs to specific cortical endoplasmic reticulum subdomains. Plant J 60: 146-155.
42. Weber C, Nover L, Fauth M (2008) Plant stress granules and mRNA processing bodies are distinct from heat stress granules. Plant J 56: 517-530.
43. Yang Y, Crofts AJ, Crofts N, Okita TW (2014) Multiple RNA binding protein complexes interact with the rice prolamine RNA cis-localization zipcode sequences. Plant Physiol 164: 1271-1282.