메뉴 건너뛰기




Volumn 15, Issue 6, 2014, Pages 10350-10364

Functional characterization of NIPBL physiological splice variants and eight splicing mutations in patients with cornelia de lange syndrome

Author keywords

CdLS; NIPBL; Physiological splicing; Splicing mutations

Indexed keywords

ADOLESCENT; ADULT; ARTICLE; CHILD; CLINICAL ARTICLE; CLINICAL EVALUATION; DE LANGE SYNDROME; DNA EXTRACTION; DNA SYNTHESIS; FEMALE; GENE; GENE DELETION; GENE IDENTIFICATION; GENE MUTATION; HUMAN; MALE; NIPBL GENE; NUCLEAR LOCALIZATION SIGNAL; NUCLEOTIDE SEQUENCE; PHENOTYPE; POLYMERASE CHAIN REACTION; PRESCHOOL CHILD; RNA EXTRACTION; RNA SPLICING; SCHOOL CHILD; SEQUENCE ANALYSIS; YOUNG ADULT; FRAMESHIFT MUTATION; GENETICS; INFANT; METABOLISM; PATHOLOGY;

EID: 84902274261     PISSN: 16616596     EISSN: 14220067     Source Type: Journal    
DOI: 10.3390/ijms150610350     Document Type: Article
Times cited : (22)

References (38)
  • 11
    • 19444365725 scopus 로고    scopus 로고
    • Cornelia de Lange syndrome and the link between chromosomal function, DNA repair and developmental gene regulation
    • Strachan, T. Cornelia de Lange syndrome and the link between chromosomal function, DNA repair and developmental gene regulation. Curr. Opin. Genet. Dev. 2005, 15, 258-264.
    • (2005) Curr. Opin. Genet. Dev. , vol.15 , pp. 258-264
    • Strachan, T.1
  • 12
    • 2642565901 scopus 로고    scopus 로고
    • NIPBL, encoding a homolog of fungal Scc2-type sister chromatid cohesion proteins and fly Nipped-B, is mutated in Cornelia de Lange syndrome
    • Tonkin, E.T.; Wang, T.J.; Lisgo, S.; Bamshad, M.J.; Strachan, T. NIPBL, encoding a homolog of fungal Scc2-type sister chromatid cohesion proteins and fly Nipped-B, is mutated in Cornelia de Lange syndrome. Nat. Genet. 2004, 36, 636-641.
    • (2004) Nat. Genet. , vol.36 , pp. 636-641
    • Tonkin, E.T.1    Wang, T.J.2    Lisgo, S.3    Bamshad, M.J.4    Strachan, T.5
  • 13
    • 4644280172 scopus 로고    scopus 로고
    • Scc2 couples replication licensing to sister chromatid cohesion in Xenopus egg extracts
    • Gillespie, P.J.; Hirano, T. Scc2 couples replication licensing to sister chromatid cohesion in Xenopus egg extracts. Curr. Biol. 2004, 14, 1598-1603.
    • (2004) Curr. Biol. , vol.14 , pp. 1598-1603
    • Gillespie, P.J.1    Hirano, T.2
  • 14
    • 85067741184 scopus 로고    scopus 로고
    • Available online:, (accessed on 10 April 2014)
    • Leiden Open Variant Database. Available online: http://www.dmd.nl (accessed on 10 April 2014).
    • Leiden Open Variant Database
  • 15
    • 84887615981 scopus 로고    scopus 로고
    • Mutation spectrum and genotype-phenotype correlation in Cornelia de Lange syndrome
    • Mannini, L.; Cucco, F.; Quarantotti, V.; Krantz, I.D.; Musio, A. Mutation spectrum and genotype-phenotype correlation in Cornelia de Lange syndrome. Hum. Mutat. 2013, 34, 1589-1596.
    • (2013) Hum. Mutat. , vol.34 , pp. 1589-1596
    • Mannini, L.1    Cucco, F.2    Quarantotti, V.3    Krantz, I.D.4    Musio, A.5
  • 19
    • 84874648287 scopus 로고    scopus 로고
    • Available online:, (accessed on 10 April 2014)
    • Splice Site Prediction by Neural Network. Available online: http//:www.fruitfly.org/seq_tools/ splice.html (accessed on 10 April 2014).
    • Splice Site Prediction by Neural Network
  • 20
    • 84875811732 scopus 로고    scopus 로고
    • Available online:, (accessed on 10 April 2014)
    • Human Splicing Finder. Available online: http//:www.umd.be/HSF/ (accessed on 10 April 2014).
    • Human Splicing Finder
  • 21
    • 0037102580 scopus 로고    scopus 로고
    • The human XPC DNA repair gene: Arrangement, splice site information content and influence of a single nucleotide polymorphism in a splice acceptor site on alternative splicing and function
    • Khan, S.G.; Muniz-Medina, V.; Shahlavi, T.; Baker, C.C.; Inui, H.; Ueda, T.; Emmert, S.; Schneider, T.D.; Kraemer, K.H. The human XPC DNA repair gene: Arrangement, splice site information content and influence of a single nucleotide polymorphism in a splice acceptor site on alternative splicing and function. Nucleic Acids Res. 2002, 30, 3624-3631.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 3624-3631
    • Khan, S.G.1    Muniz-Medina, V.2    Shahlavi, T.3    Baker, C.C.4    Inui, H.5    Ueda, T.6    Emmert, S.7    Schneider, T.D.8    Kraemer, K.H.9
  • 22
    • 0030666635 scopus 로고    scopus 로고
    • A two-base deletion in exon 6 of the 3-hydroxy-3-methylglutaryl coenzyme A lyase (HL) gene producing the skipping of exons 5 and 6 determines 3-hydroxy-3-methylglutaric aciduria
    • Casals, N.; Pié, J.; Casale, C.H.; Zapater, N.; Ribes, A.; Castro-Gago, M.; Rodriguez-Segade, S.; Wanders, R.J.; Hegardt, F.G. A two-base deletion in exon 6 of the 3-hydroxy-3-methylglutaryl coenzyme A lyase (HL) gene producing the skipping of exons 5 and 6 determines 3-hydroxy-3-methylglutaric aciduria. J. Lipid Res. 1997, 38, 2303-2313.
    • (1997) J. Lipid Res. , vol.38 , pp. 2303-2313
    • Casals, N.1    Pié, J.2    Casale, C.H.3    Zapater, N.4    Ribes, A.5    Castro-Gago, M.6    Rodriguez-Segade, S.7    Wanders, R.J.8    Hegardt, F.G.9
  • 26
    • 0036207384 scopus 로고    scopus 로고
    • Listening to silence and understanding nonsense: Exonic mutations that affect splicing
    • Cartegni, L.; Chew, S.L.; Krainer, A.R. Listening to silence and understanding nonsense: Exonic mutations that affect splicing. Nat. Rev. Genet. 2002, 3, 285-298.
    • (2002) Nat. Rev. Genet. , vol.3 , pp. 285-298
    • Cartegni, L.1    Chew, S.L.2    Krainer, A.R.3
  • 27
    • 73949094341 scopus 로고    scopus 로고
    • Identification and characterisation of a novel GHR defect disrupting the polypyrimidine tract and resulting in GH insensitivity
    • David, A.; Miraki-Moud, F.; Shaw, N.J.; Savage, M.O.; Clark, A.J.L.; Metherell, L.A. Identification and characterisation of a novel GHR defect disrupting the polypyrimidine tract and resulting in GH insensitivity. Eur. J. Endocrinol. 2010, 162, 37-42.
    • (2010) Eur. J. Endocrinol. , vol.162 , pp. 37-42
    • David, A.1    Miraki-Moud, F.2    Shaw, N.J.3    Savage, M.O.4    Clark, A.J.L.5    Metherell, L.A.6
  • 28
    • 26944453614 scopus 로고    scopus 로고
    • Splicing in action: Assessing disease causing sequence changes
    • Baralle, D.; Baralle, M. Splicing in action: Assessing disease causing sequence changes. J. Med. Genet. 2005, 42, 737-748.
    • (2005) J. Med. Genet. , vol.42 , pp. 737-748
    • Baralle, D.1    Baralle, M.2
  • 29
    • 33846934728 scopus 로고    scopus 로고
    • Single base-pair substitutions in exon-intron junctions of human genes: Nature, distribution, and consequences for mRNA splicing
    • Krawczak, M.; Thomas, N.S.; Hundrieser, B.; Mort, M.; Wittig, M.; Hampe, J.; Cooper, D.N. Single base-pair substitutions in exon-intron junctions of human genes: Nature, distribution, and consequences for mRNA splicing. Hum. Mutat. 2007, 28, 150-158.
    • (2007) Hum. Mutat. , vol.28 , pp. 150-158
    • Krawczak, M.1    Thomas, N.S.2    Hundrieser, B.3    Mort, M.4    Wittig, M.5    Hampe, J.6    Cooper, D.N.7
  • 31
    • 84875894901 scopus 로고    scopus 로고
    • A mutant mRNA expression in an endomyocardial biopsy sample obtained from a patient with a cardiac variant of fabry disease caused by a novel acceptor splice site mutation in the invariant AG of intron 5 of the α-galactosidase A gene
    • Watanabe, T.; Hanawa, H.; Suzuki, T.; Jiao, S.; Yoshida, K.; Ogura, M.; Ohno, Y.; Hayashi, Y.; Ito, M.; Kashimura, T.; et al. A mutant mRNA expression in an endomyocardial biopsy sample obtained from a patient with a cardiac variant of fabry disease caused by a novel acceptor splice site mutation in the invariant AG of intron 5 of the α-galactosidase A gene. Intern. Med. 2013, 52, 777-780.
    • (2013) Intern. Med. , vol.52 , pp. 777-780
    • Watanabe, T.1    Hanawa, H.2    Suzuki, T.3    Jiao, S.4    Yoshida, K.5    Ogura, M.6    Ohno, Y.7    Hayashi, Y.8    Ito, M.9    Kashimura, T.10
  • 33
    • 78049443024 scopus 로고    scopus 로고
    • Development of NIPBL locus-specific database using LOVD: From novel mutations to further genotype-phenotype correlations in Cornelia de Lange syndrome
    • Oliveira, J.; Dias, C.; Redeker, E.; Costa, E.; Silva, J.; Reis Lima, M.; den Dunnen, J.T.; Santos, R. Development of NIPBL locus-specific database using LOVD: From novel mutations to further genotype-phenotype correlations in Cornelia de Lange syndrome. Hum. Mutat. 2010, 31, 1216-1222.
    • (2010) Hum. Mutat. , vol.31 , pp. 1216-1222
    • Oliveira, J.1    Dias, C.2    Redeker, E.3    Costa, E.4    Silva, J.5    Reis Lima, M.6    den Dunnen, J.T.7    Santos, R.8
  • 34
    • 84874602609 scopus 로고    scopus 로고
    • Available online:, (accessed on 10 April 2014)
    • Human Genome Variation Society. Available online: http://www.hgvs.org/ (accessed on 10 April 2014).
    • Human Genome Variation Society
  • 35
    • 85067748640 scopus 로고    scopus 로고
    • Available online:, (accessed on 10 April 2014)
    • Mutalyzer. Available online: https://mutalyzer.nl (accessed on 10 April 2014).
    • Mutalyzer
  • 38
    • 2442441507 scopus 로고    scopus 로고
    • Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals
    • Yeo, G.; Burge, C.B. Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals. J. Comput. Biol. 2004, 11, 377-394.
    • (2004) J. Comput. Biol. , vol.11 , pp. 377-394
    • Yeo, G.1    Burge, C.B.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.