Clonal expansion of verticillium dahliae in lettuce

Phytopathology

Volumn 104, Issue 6, 2014, Pages 641-649

  Gurung, S ^a   Short, D P G ^a   Atallah, Z K ^b   Subbarao, K V ^a  

^a Extension Univ of California   (United States)

^b Hartnell College   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

FUNGAL DNA; MICROSATELLITE DNA; PRIMER DNA;

ALLELE; ARTICLE; DEMOGRAPHY; FUNGAL MATING TYPE GENE; GENE LINKAGE DISEQUILIBRIUM; GENETIC VARIABILITY; GENETICS; GENOTYPE; HAPLOTYPE; ISOLATION AND PURIFICATION; LETTUCE; MICROBIOLOGY; PLANT DISEASE; POPULATION GENETICS; SPECIES DIFFERENCE; VERTICILLIUM;

ALLELES; DEMOGRAPHY; DNA PRIMERS; DNA, FUNGAL; GENES, MATING TYPE, FUNGAL; GENETIC VARIATION; GENETICS, POPULATION; GENOTYPE; HAPLOTYPES; LETTUCE; LINKAGE DISEQUILIBRIUM; MICROSATELLITE REPEATS; PLANT DISEASES; SPECIES SPECIFICITY; VERTICILLIUM;

EID: 84902244216     PISSN: 0031949X     EISSN: None     Source Type: Journal    
DOI: 10.1094/PHYTO-10-13-0282-R     Document Type: Article

References (43)

1. Agapow, P. M., and Burt, A. 2001. Indices of multilocus linkage disequilibrium. Mol. Ecol. Notes 1:101-102 (Pubitemid 33691862)
2. Almany, G. R., De Arruda, M. P., Arthofer, W., Atallah, Z. K., Beissinger, S. R., Berumen, M. L., Bogdanowicz, S. M., Brown, S. D., Bruford, M. W., Burdine, C., Busch, J. W., Campbell, N. R., Carey, D., Carstens, B. C., Chu, K. H., Cubeta, M. A., Cuda, J. P., Cui, Z. X., Datnoff, L. E., Davila, J. A., Davis, E. S., Davis, R. M., Diekmann, O. E., Eizirik, E., Fargallo, J. A., Fernandes, F., Fukuda, H., Gale, L. R., Gallagher, E., Gao, Y. Q., Girard, P., Godhe, A., Goncalves, E. C., Gouveia, L., Grajczyk, A. M., Grose, M. J., Gu, Z. F., Hallden, C., Harnstrom, K., Hemmingsen, A. H., Holmes, G., Huang, C. H., Huang, C. C., Hudman, S. P., Jones, G. P., Kanetis, L., Karunasagar, I., Keyghobadi, N., Klosterman, S. J., Klug, P. E., Koch, J., Koopman, M. M., Koppler, K., Koshimizu, E., Krumbock, S., Kubisiak, T., Landis, J. B., Lasta, M. L., Lee, C. Y., Li, Q. Q., Li, S. H., Lin, R. C., Liu, M., Liu, N., Liu, W. C., Liu, Y., Loiseau, A., Luan, W. S., Maruthachalam, K. K., McCormick, H. M., Mellick, R., Monnahan, P. J., Morielle-Versute, E., Murray, T. E., Narum, S. R., Neufeld, K., de Nova, P. J. G., Ojiambo, P. S., Okamoto, N., Othman, A. S., Overholt, W. A., Pardini, R., Paterson, I. G., Patty, O. A., Paxton, R. J., Planes, S., Porter, C., Pratchett, M. S., Puttker, T., Rasic, G., Rasool, B., Rey, O., Riegler, M., Riehl, C., Roberts, J. M. K., Roberts, P. D., Rochel, E., Roe, K. J., Rossetto, M., Ruzzante, D. E., Sakamoto, T., Saravanan, V., Sarturi, C. R., Schmidt, A., Schneider, M. P. C., Schuler, H., Serb, J. M., Serrao, E. T. A., Shi, Y. H., Silva, A., Sin, Y. W., Sommer, S., Stauffer, C., Strussmann, C. A., Subbarao, K. V., Syms, C., Tan, F., Tejedor, E. D., Thorrold, S. R., Trigiano, R. N., Trucco, M. I., Tsuchiya-Jerep, M. T. N., Vergara, P., van de Vliet, M. S., Wadl, P. A., Wang, A. M., Wang, H. X., Wang, R. X., Wang, X. W., Wang, Y., Weeks, A. R., Wei, F. W., Werner, W. J., Wiley, E. O., Williams, D. A., Wilkins, R. J., Wisely, S. M., With, K. A., Wu, D. H., Yao, C. T., Yau, C., Yeap, B. K., Zhai, B. P., Zhan, X. J., Zhang, G. Y., Zhang, S. Y., Zhao, R., and Zhu, L. F. 2009. Permanent genetic resources added to Molecular Ecology Resources database 1. May 2009-31 July 2009. Mol. Ecol. Resour. 9:1460-1466
3. Anonymous. 2011. USDA-NASS. http://www.nass.usda.gov/Publications/ Ag-Statistics/2011/index.asp
4. Anonymous. 2012. Agricultural Commissioner's Office Monterey Country Crop Report 2011
5. Atallah, Z. K., Hayes, R. J., and Subbarao, K. V. 2011. Fifteen years of Verticillium wilt of lettuce in America's salad bowl: A tale of immigration, subjugation, and abatement. Plant Dis. 95:784-792
6. Atallah, Z. K., Maruthachalam, K., du Toit, L., Koike, S. T., Davis, R. M., Klosterman, S. J., Hayes, R. J., and Subbarao, K. V. 2010. Population analyses of the vascular plant pathogen Verticillium dahliae detect recombination and transcontinental gene flow. Fungal Genet. Biol. 47:416-422
7. Atallah, Z. K., Maruthachalam, K., and Subbarao, K. V. 2012. Sources of Verticillium dahliae affecting lettuce. Phytopathology 102:1071-1078
8. Atallah, Z. K., Maruthachalam, K., Vallad, G. E., Davis, R. M., Klosterman, S. J., and Subbarao, K. V. 2011. Analysis of Verticillium dahliae suggests a lack of correlation between genotypic diversity and virulence phenotypes. Plant Dis. 95:1224-1232
9. Berbegal, M., Garzón, C. D., Ortega, A., Armengol, J., Jiménez-Díaz, R. M., and Jiménez-Gasco, M. M. 2011. Development and application of new molecular markers for analysis of genetic diversity in Verticillium dahliae populations. Plant Pathol. 60:866-877
10. Berbegal, M., Ortega, A., Jiménez-Gasco, M. M., Olivares-García, C., Jiménez-Díaz, R. M., and Armengol, J. 2010. Genetic diversity and host range of Verticillium dahliae isolates from artichoke and other vegetable crops in Spain. Plant Dis. 94:396-404
11. Collado-Romero, M., Mercado-Blanco, J., Olivares-García, C., Valverde- Corredor, A., and Jiménez-Díaz, R. M. 2006. Molecular variability within and among Verticillium dahliae vegetative compatibility groups determined by fluorescent amplified fragment length polymorphism and polymerase chain reaction markers. Phytopathology 96:485-495
12. de Jonge, R., Bolton, M., Kombrink, A., van den Berg, G., Yadeta, K., and Thomma, B. 2013. Extensive chromosomal reshuffling drives evolution of virulence in an asexual pathogen. Genome Res. 23:1271-1282
13. de Jonge, R., van Esse, H. P., Maruthachalam, K., Bolton, M. D., Santhanam, P., Saber, M. K., Zhang, Z., Usami, T., Lievens, B., and Subbarao, K. V. 2012. Tomato immune receptor Ve1 recognizes effector of multiple fungal pathogens uncovered by genome and RNA sequencing. Proc. Natl. Acad. Sci. USA 109:5110-5115
14. Dilmaghani, A., Gladieux, P., Gout, L., Giraud, T., Brunner, P. C., Stachowiak, A., Balesdent, M. H., and Rouxel, T. 2012. Migration patterns and changes in population biology associated with the worldwide spread of the oilseed rape pathogen Leptosphaeria maculans. Mol. Ecol. 21:2519-2533
15. du Toit, L. J., Derie, M. L., and Hernandez-Perez, P. 2005. Verticillium wilt in spinach seed production. Plant Dis. 89:4-11 (Pubitemid 40047828)
16. Dung, K. S. J., Peever, T., and Johnson, D. A. 2013. Verticillium dahliae populations from mint and potato are genetically divergent with predominant haplotypes. Phytopathology 103:445-459
17. Evanno, G., Regnaut, S., and Goudet, J. 2005. Detecting the number of clusters of individuals using the software STRUCTURE: A simulation study. Mol. Ecol. 14:2611-2620 (Pubitemid 40886055)
18. Feil, E. J., Li, B. C., Aanensen, D. M., Hanage, W. P., and Spratt, B. G. 2004. eBURST: Inferring patterns of evolutionary descent among clusters of related bacterial genotypes from multilocus sequence typing data. J. Bacteriol. 186:1518-1530 (Pubitemid 38248742)
19. Francisco, A. P., Bugalho, M., Ramirez, M., and Carriço, J. A. 2009. Global optimal eBURST analysis of multilocus typing data using a graphic matroid approach. BMC Bioinformatics 10:152
20. Goss, E. M., Larsen, M., Chastagner, G. A., Givens, D. R., and Grünwald, N. J. 2009. Population genetic analysis infers migration pathways of Phytophthora ramorum in US nurseries. PLoS Pathogens 5:e1000583
21. Hayes, R. J., Maruthachalam, K., Vallad, G. E., Klosterman, S. J., and Subbarao, K. V. 2011. Selection for resistance to Verticillium wilt caused by race 2 isolates of Verticillium dahliae in accessions of lettuce (Lactuca sativa L.). Hortscience 46:201-206
22. Hayes, R. J., Vallad, G. E., Qin, Q.-M., Grube, R. C., and Subbarao, K. V. 2007. Variation for resistance to Verticillium wilt in lettuce (Lactuca sativa). Plant Dis. 91:439-445 (Pubitemid 46466698)
23. Inderbitzin, P., Bostock, R. M., Davis, R. M., Usami, T., Platt, H. W., and Subbarao, K. V. 2011. Phylogenetics and taxonomy of the fungal vascular wilt pathogen Verticillium, with the descriptions of five new species. PLoS ONE 6:e28341
24. Inderbitzin, P., Davis, R. M., Bostock, R. M., and Subbarao, K. V. 2013. Identification and differentiation of Verticillium species and V. longisporum lineages by simplex and multiplex PCR assays. PLoS ONE 8:e65990
25. Linde, C., Drenth, A., and Wingfield, M. J. 1999. Gene and genotypic diversity of Phytophthora cinnamomi in South Africa and Australia revealed by DNA polymorphisms. Eur. J. Plant Pathol. 105:667-680
26. McDonald, B. A., and Linde, C. 2002. Pathogen population genetics, evolutionary potential, and durable resistance. Annu. Rev. Phytopathol. 40:349-379 (Pubitemid 35235585)
27. McDonald, B. A., and McDermott, J. M. 1993. Population genetics of plant pathogenic fungi. Bioscience 43:311-319
28. Milgroom, M. G., Sotirovski, K., Spica, D., Davis, J. E., Brewer, M. T., Milev, M., and Cortesi, P. 2008. Clonal population structure of the chestnut blight fungus in expanding ranges in southeastern Europe. Mol. Ecol. 17:4446-4458
29. Nei, M. 1978. Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89:583-590 (Pubitemid 8396073)
30. Peever, T., Salimath, S. S., Su, G., Kaiser, W. J., and Muehlbauer, F. J. 2004. Historical and contemporary multilocus population structure of Ascochyta rabiei (teleomorph: Didymella rabiei) in the Pacific Northwest of the United States. Mol. Ecol. 13:291-309 (Pubitemid 38143375)
31. Pegg, G. F., and Brady, B. L. 2002. Verticillium Wilts. CABI Publishing, New York, NY
32. Pritchard, J. K., Stephens, M., and Donnelly, P. 2000. Inference of population structure using multilocus genotype data. Genetics 155:945-959 (Pubitemid 30397141)
33. Rosenberg, N. A. 2004. DISTRUCT: A program for the graphical display of population structure. Mol. Ecol. Notes 4:137-138 (Pubitemid 38261335)
34. Short, D. P., Gurung, S., Maruthachalam, K., Atallah, Z. K., and Subbarao, K. V. 2014. Verticillium dahliae race 2-specific PCR reveals a high frequency of race 2 strains in commercial spinach seed lots and delineates race structure. Phytopathology doi.org/10.1094/PHYTO-09-13- 0253-R
35. Subbarao, K. V., Hubbard, J. C., Greathead, A. S., and Spencer, G. A. 1997. Verticillium wilt. Pages 26-27 in: Compendium of Lettuce Dis eases. R. M. Davis, K. V. Subbarao, R. N. Raid, and E. A. Kurtz, eds. The American Phytopathological Society, St. Paul, MN
36. Szpiech, Z. A., Jakobsson, M., and Rosenberg, N. A. 2008. ADZE: A rarefaction approach for counting alleles private to combinations of populations. Bioinformatics 24:2498-2504
37. Usami, T., Itoh, M., and Amemiya, Y. 2009. Asexual fungus Verticillium dahliae is potentially heterothallic. J. Gen. Plant Pathol. 75:422-427
38. Usami, T., Itoh, M., Morii, S., Miyamoto, T., Kaneda, M., Ogawara, T., and Amemiya, Y. 2012. Involvement of two different types of Verticillium dahliae in lettuce wilt in Ibaraki Prefecture, Japan. J. Gen. Plant Pathol. 78:348-352
39. Vallad, G. E., Qin, Q.-M., Grube, R., Hayes, R. J., and Subbarao, K. V. 2006. Characterization of race-specific interactions among isolates of Verticillium dahliae pathogenic on lettuce. Phytopathology 96:1380-1387 (Pubitemid 44845796)
40. Vercauteren, A., De Dobbelaere, I., Grünwald, N., Bonants, P., Van Bockstaele, E., Maes, M., and Heungens, K. 2010. Clonal expansion of the Belgian Phytophthora ramorum populations based on new microsatellite markers. Mol. Ecol. 19:92-107
41. Wu, B. M., Koike, S. T., Vallad, G. E., and Subbarao, K. V. 2008. Postfumigation horizontal and vertical recolonization of soil by Verticillium dahliae. Phytopathology 98(suppl.):S173
42. Yeh, F. C., and Boyle, T. J. B. 1997. Population genetic analysis of codominant and dominant markers and quantitative traits. Belg. J. Bot. 129:157
43. Zhan, J., Kema, G., Waalwijk, C., and McDonald, B. 2002. Distribution of mating type alleles in the wheat pathogen Mycosphaerella graminicola over spatial scales from lesions to continents. Fungal Genet. Biol. 36: 128-136. (Pubitemid 34757038)