-
1
-
-
79960909229
-
Experimental evaluation of support vector machine-based and correlation-based approaches to automatic particle selection
-
Arbeláez P., Han B.-G., Typke D., Lim J., Glaeser R.M., Malik J. Experimental evaluation of support vector machine-based and correlation-based approaches to automatic particle selection. J. Struct. Biol. 2011, 175(3):319-328.
-
(2011)
J. Struct. Biol.
, vol.175
, Issue.3
, pp. 319-328
-
-
Arbeláez, P.1
Han, B.-G.2
Typke, D.3
Lim, J.4
Glaeser, R.M.5
Malik, J.6
-
2
-
-
84878580683
-
Ribosome structures to near-atomic resolution from thirty thousand cryo-EM particles
-
Bai X., Fernandez I.S., McMullan G., Scheres S.H. Ribosome structures to near-atomic resolution from thirty thousand cryo-EM particles. ELife 2013, 2.
-
(2013)
ELife
, pp. 2
-
-
Bai, X.1
Fernandez, I.S.2
McMullan, G.3
Scheres, S.H.4
-
3
-
-
0031257718
-
A method for establishing the handedness of biological macromolecules
-
Belnap D.M., Olson N.H., Baker T.S. A method for establishing the handedness of biological macromolecules. J. Struct. Biol. 1997, 120:44-51.
-
(1997)
J. Struct. Biol.
, vol.120
, pp. 44-51
-
-
Belnap, D.M.1
Olson, N.H.2
Baker, T.S.3
-
4
-
-
84862783740
-
Beam-induced motion of vitrified specimen on holey carbon film
-
Brilot A.F., Chen J.Z., Cheng A., Pan J., Harrison S.C., Potter C.S., Carragher B., Henderson R., Grigorieff N. Beam-induced motion of vitrified specimen on holey carbon film. J. Struct. Biol. 2012, 177:630-637.
-
(2012)
J. Struct. Biol.
, vol.177
, pp. 630-637
-
-
Brilot, A.F.1
Chen, J.Z.2
Cheng, A.3
Pan, J.4
Harrison, S.C.5
Potter, C.S.6
Carragher, B.7
Henderson, R.8
Grigorieff, N.9
-
5
-
-
0036310396
-
Handedness of the herpes simplex virus capsid and procapsid
-
Cheng N., Trus B.L., Belnap D.M., Newcomb W.W., Brown J.C., Steven A.C. Handedness of the herpes simplex virus capsid and procapsid. J. Virol. 2002, 76:7855-7859.
-
(2002)
J. Virol.
, vol.76
, pp. 7855-7859
-
-
Cheng, N.1
Trus, B.L.2
Belnap, D.M.3
Newcomb, W.W.4
Brown, J.C.5
Steven, A.C.6
-
6
-
-
0015285440
-
Use of the Hough transformation to detect lines and curves in pictures
-
Duda R.O., Hart P.E. Use of the Hough transformation to detect lines and curves in pictures. Commun. ACM 1972, 15(1):11-15.
-
(1972)
Commun. ACM
, vol.15
, Issue.1
, pp. 11-15
-
-
Duda, R.O.1
Hart, P.E.2
-
8
-
-
51349143018
-
Retrospective: radiation damage and its associated 'Information Limitations'
-
Glaeser R.M. Retrospective: radiation damage and its associated 'Information Limitations'. J. Struct. Biol. 2008, 163(3):271-276.
-
(2008)
J. Struct. Biol.
, vol.163
, Issue.3
, pp. 271-276
-
-
Glaeser, R.M.1
-
9
-
-
33745949241
-
-
Oxford University Press, New York
-
Glaeser R.M., Downing K.H., DeRosier D., Chiu W., Frank J. Electron Crystallography of Biological Macromolecules 2006, Oxford University Press, New York.
-
(2006)
Electron Crystallography of Biological Macromolecules
-
-
Glaeser, R.M.1
Downing, K.H.2
DeRosier, D.3
Chiu, W.4
Frank, J.5
-
10
-
-
70349745523
-
Survey of large protein complexes in D. vulgaris reveals great structural diversity
-
Han B.-G., Dong M., Liu H., Camp L., Geller J., Singer M., Hazen T.C., Choi M., Witkowska H.E., Ball D.A., Typke D., Downing K.H., Shatsky M., Brenner S.E., Chandonia J.-M., Biggin M.D., Glaeser R.M. Survey of large protein complexes in D. vulgaris reveals great structural diversity. Proc. Natl. Acad. Sci. USA 2009, 106(39):16580-16585.
-
(2009)
Proc. Natl. Acad. Sci. USA
, vol.106
, Issue.39
, pp. 16580-16585
-
-
Han, B.-G.1
Dong, M.2
Liu, H.3
Camp, L.4
Geller, J.5
Singer, M.6
Hazen, T.C.7
Choi, M.8
Witkowska, H.E.9
Ball, D.A.10
Typke, D.11
Downing, K.H.12
Shatsky, M.13
Brenner, S.E.14
Chandonia, J.-M.15
Biggin, M.D.16
Glaeser, R.M.17
-
11
-
-
84873164278
-
Automated correlation of single particle tilt pairs for random conical tilt and orthogonal tilt reconstructions
-
Hauer F., Gerle C., Kirves J.-M., Stark H. Automated correlation of single particle tilt pairs for random conical tilt and orthogonal tilt reconstructions. J. Struct. Biol. 2013, 181(2):149-154.
-
(2013)
J. Struct. Biol.
, vol.181
, Issue.2
, pp. 149-154
-
-
Hauer, F.1
Gerle, C.2
Kirves, J.-M.3
Stark, H.4
-
12
-
-
0026523919
-
Image contrast in high-resolution electron microscopy of biological macromolecules: TMV in ice
-
Henderson R. Image contrast in high-resolution electron microscopy of biological macromolecules: TMV in ice. Ultramicroscopy 1992, 46(1-4):1-18.
-
(1992)
Ultramicroscopy
, vol.46
, Issue.1-4
, pp. 1-18
-
-
Henderson, R.1
-
13
-
-
80855132610
-
Tilt-pair analysis of images from a range of different specimens in single-particle electron cryomicroscopy
-
Henderson R., Chen S., Chen J.Z., Grigorieff N., Passmore L.A., Ciccarelli L., Rubinstein J.L., Crowther R.A., Stewart P.L., Rosenthal P.B. Tilt-pair analysis of images from a range of different specimens in single-particle electron cryomicroscopy. J. Mol. Biol. 2011, 413:1028-1046.
-
(2011)
J. Mol. Biol.
, vol.413
, pp. 1028-1046
-
-
Henderson, R.1
Chen, S.2
Chen, J.Z.3
Grigorieff, N.4
Passmore, L.A.5
Ciccarelli, L.6
Rubinstein, J.L.7
Crowther, R.A.8
Stewart, P.L.9
Rosenthal, P.B.10
-
14
-
-
77957297209
-
Chapter nine - the orthogonal tilt reconstruction method
-
Academic Press, Vol. 482, G.J. Jensen (Ed.)
-
Leschziner A. Chapter nine - the orthogonal tilt reconstruction method. Methods in Enzymology 2010, 237-262. Academic Press, Vol. 482. G.J. Jensen (Ed.).
-
(2010)
Methods in Enzymology
, pp. 237-262
-
-
Leschziner, A.1
-
15
-
-
32544460568
-
The orthogonal tilt reconstruction method: an approach to generating single-class volumes with no missing cone for ab initio reconstruction of asymmetric particles
-
Leschziner A.E., Nogales E. The orthogonal tilt reconstruction method: an approach to generating single-class volumes with no missing cone for ab initio reconstruction of asymmetric particles. J. Struct. Biol. 2006, 153(3):284-299.
-
(2006)
J. Struct. Biol.
, vol.153
, Issue.3
, pp. 284-299
-
-
Leschziner, A.E.1
Nogales, E.2
-
16
-
-
0038441501
-
Accurate determination of local defocus and specimen tilt in electron microscopy
-
Mindell J.A., Grigorieff N. Accurate determination of local defocus and specimen tilt in electron microscopy. J. Struct. Biol. 2003, 142(3):334-347.
-
(2003)
J. Struct. Biol.
, vol.142
, Issue.3
, pp. 334-347
-
-
Mindell, J.A.1
Grigorieff, N.2
-
17
-
-
0028393194
-
The ribosome at improved resolution: new techniques for merging and orientation refinement in 3D cryo-electron microscopy of biological particles
-
Penczek P.A., Grassucci R.A., Frank J. The ribosome at improved resolution: new techniques for merging and orientation refinement in 3D cryo-electron microscopy of biological particles. Ultramicroscopy 1994, 53(3):251-270.
-
(1994)
Ultramicroscopy
, vol.53
, Issue.3
, pp. 251-270
-
-
Penczek, P.A.1
Grassucci, R.A.2
Frank, J.3
-
18
-
-
0001339881
-
Three-dimensional reconstruction of single particles from random and nonrandom tilt series
-
Radermacher M. Three-dimensional reconstruction of single particles from random and nonrandom tilt series. J. Electron Microsc. Tech. 1988, 9:359-394.
-
(1988)
J. Electron Microsc. Tech.
, vol.9
, pp. 359-394
-
-
Radermacher, M.1
-
19
-
-
0022605670
-
A new 3-D reconstruction scheme applied to the 50S ribosomal subunit of E. coli
-
Radermacher M., Wagenknecht T., Verschoor A., Frank J. A new 3-D reconstruction scheme applied to the 50S ribosomal subunit of E. coli. J. Microsc. 1986, 141(1):RP1-RP2.
-
(1986)
J. Microsc.
, vol.141
, Issue.1
-
-
Radermacher, M.1
Wagenknecht, T.2
Verschoor, A.3
Frank, J.4
-
20
-
-
0142042865
-
Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy
-
Rosenthal P.B., Henderson R. Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy. J. Mol. Biol. 2003, 333(4):721-745.
-
(2003)
J. Mol. Biol.
, vol.333
, Issue.4
, pp. 721-745
-
-
Rosenthal, P.B.1
Henderson, R.2
-
21
-
-
44949165726
-
Image processing for electron microscopy single-particle analysis using XMIPP
-
Scheres S.H.W., Núñez-Ramírez R., Sorzano C.O.S., Carazo J.M., Marabini R. Image processing for electron microscopy single-particle analysis using XMIPP. Nat. Protoc. 2008, 3(6):977-990.
-
(2008)
Nat. Protoc.
, vol.3
, Issue.6
, pp. 977-990
-
-
Scheres, S.H.W.1
Núñez-Ramírez, R.2
Sorzano, C.O.S.3
Carazo, J.M.4
Marabini, R.5
-
22
-
-
71049139404
-
Averaging of electron subtomograms and random conical tilt reconstructions through likelihood optimization
-
Scheres S.H.W., Melero R., Valle M., Carazo J.-M. Averaging of electron subtomograms and random conical tilt reconstructions through likelihood optimization. Structure 2009, 17(12):1563-1572.
-
(2009)
Structure
, vol.17
, Issue.12
, pp. 1563-1572
-
-
Scheres, S.H.W.1
Melero, R.2
Valle, M.3
Carazo, J.-M.4
-
23
-
-
58049204808
-
SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs
-
Shaikh T.R., Gao H., Baxter W.T., Asturias F.J., Boisset N., Leith A., Frank J. SPIDER image processing for single-particle reconstruction of biological macromolecules from electron micrographs. Nat. Protoc. 2008, 3(12):1941-1974.
-
(2008)
Nat. Protoc.
, vol.3
, Issue.12
, pp. 1941-1974
-
-
Shaikh, T.R.1
Gao, H.2
Baxter, W.T.3
Asturias, F.J.4
Boisset, N.5
Leith, A.6
Frank, J.7
-
24
-
-
33845332754
-
EMAN2: an extensible image processing suite for electron microscopy
-
Tang G., Peng L., Baldwin P.R., Mann D.S., Jiang W., Rees I., Ludtke S.J. EMAN2: an extensible image processing suite for electron microscopy. J. Struct. Biol. 2007, 157:38-46.
-
(2007)
J. Struct. Biol.
, vol.157
, pp. 38-46
-
-
Tang, G.1
Peng, L.2
Baldwin, P.R.3
Mann, D.S.4
Jiang, W.5
Rees, I.6
Ludtke, S.J.7
-
25
-
-
11144226412
-
High-throughput film-densitometry: an efficient approach to generate large data sets
-
Typke D., Nordmeyer R.A., Jones A., Lee J., Avila-Sakar A., Downing K.H., Glaeser R.M. High-throughput film-densitometry: an efficient approach to generate large data sets. J. Struct. Biol. 2005, 149(1):17-29.
-
(2005)
J. Struct. Biol.
, vol.149
, Issue.1
, pp. 17-29
-
-
Typke, D.1
Nordmeyer, R.A.2
Jones, A.3
Lee, J.4
Avila-Sakar, A.5
Downing, K.H.6
Glaeser, R.M.7
-
26
-
-
0023102907
-
Angular reconstitution: a posteriori assignment of projection directions for 3D reconstruction
-
Van Heel M. Angular reconstitution: a posteriori assignment of projection directions for 3D reconstruction. Ultramicroscopy 1987, 21(2):111-123.
-
(1987)
Ultramicroscopy
, vol.21
, Issue.2
, pp. 111-123
-
-
Van Heel, M.1
-
27
-
-
0034333321
-
Parameters affecting specimen flatness of two-dimensional crystals for electron crystallography
-
Vonck J. Parameters affecting specimen flatness of two-dimensional crystals for electron crystallography. Ultramicroscopy 2000, 85:123-129.
-
(2000)
Ultramicroscopy
, vol.85
, pp. 123-129
-
-
Vonck, J.1
-
28
-
-
63649113687
-
DoG Picker and TiltPicker: software tools to facilitate particle selection in single particle electron microscopy
-
Voss N.R., Yoshioka C.K., Radermacher M., Potter C.S., Carragher B. DoG Picker and TiltPicker: software tools to facilitate particle selection in single particle electron microscopy. J. Struct. Biol. 2009, 166(2):205-213.
-
(2009)
J. Struct. Biol.
, vol.166
, Issue.2
, pp. 205-213
-
-
Voss, N.R.1
Yoshioka, C.K.2
Radermacher, M.3
Potter, C.S.4
Carragher, B.5
-
29
-
-
0348077422
-
Automatic particle selection: results of a comparative study
-
Zhu Y., Carragher B., Glaeser R.M., Fellmann D., Bajaj C., Bern M., Mouche F., de Haas F., Hall R.J., Kriegman D.J., Ludtke S.J., Mallick S.P., Penczek P.A., Roseman A.M., Sigworth F.J., Volkmann N., Potter C.S. Automatic particle selection: results of a comparative study. J. Struct. Biol. 2004, 145(1-2):3-14.
-
(2004)
J. Struct. Biol.
, vol.145
, Issue.1-2
, pp. 3-14
-
-
Zhu, Y.1
Carragher, B.2
Glaeser, R.M.3
Fellmann, D.4
Bajaj, C.5
Bern, M.6
Mouche, F.7
de Haas, F.8
Hall, R.J.9
Kriegman, D.J.10
Ludtke, S.J.11
Mallick, S.P.12
Penczek, P.A.13
Roseman, A.M.14
Sigworth, F.J.15
Volkmann, N.16
Potter, C.S.17
|