메뉴 건너뛰기




Volumn 181, Issue 2, 2013, Pages 149-154

Automated correlation of single particle tilt pairs for Random Conical Tilt and Orthogonal Tilt Reconstructions

Author keywords

Automated particle selection; Orthogonal Tilt; Random Conical Tilt; Single particle cryo electron microscopy; TEM

Indexed keywords

ALGORITHM; ARTICLE; ELECTRON MICROSCOPY; IMAGE RECONSTRUCTION; ORTHOGONAL TILT RECONSTRUCTION; PRIORITY JOURNAL; PROCEDURES; RANDOM CONICAL TILT RECONSTRUCTION; RIBOSOME; SIMULATION; SINGLE PARTICLE ELECTRON MICROSCOPY; THERMUS THERMOPHILUS; THREE DIMENSIONAL IMAGING;

EID: 84873164278     PISSN: 10478477     EISSN: 10958657     Source Type: Journal    
DOI: 10.1016/j.jsb.2012.10.014     Document Type: Article
Times cited : (5)

References (18)
  • 1
    • 33845449481 scopus 로고    scopus 로고
    • SIGNATURE: a single-particle selection system for molecular electron microscopy
    • Chen J.Z., Grigorieff N. SIGNATURE: a single-particle selection system for molecular electron microscopy. J. Struct. Biol. 2007, 157:168-173.
    • (2007) J. Struct. Biol. , vol.157 , pp. 168-173
    • Chen, J.Z.1    Grigorieff, N.2
  • 2
    • 0029975088 scopus 로고    scopus 로고
    • SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields
    • Frank J., Radermacher M., Penczek P., Zhu J., Li Y., et al. SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields. J. Struct. Biol. 1996, 116:190-199.
    • (1996) J. Struct. Biol. , vol.116 , pp. 190-199
    • Frank, J.1    Radermacher, M.2    Penczek, P.3    Zhu, J.4    Li, Y.5
  • 3
    • 33749426752 scopus 로고    scopus 로고
    • Affine invariant comparison of point-sets using convex hulls and Hausdorff distances
    • Gope C., Kehtarnavaz N. Affine invariant comparison of point-sets using convex hulls and Hausdorff distances. Pattern Recogn. 2007, 40:309-320.
    • (2007) Pattern Recogn. , vol.40 , pp. 309-320
    • Gope, C.1    Kehtarnavaz, N.2
  • 4
    • 37749007365 scopus 로고    scopus 로고
    • GraFix: sample preparation for single-particle electron cryomicroscopy
    • Kastner B., Fischer N., Golas M.M., Sander B., Dube P., et al. GraFix: sample preparation for single-particle electron cryomicroscopy. Nat. Methods 2008, 5:53-55.
    • (2008) Nat. Methods , vol.5 , pp. 53-55
    • Kastner, B.1    Fischer, N.2    Golas, M.M.3    Sander, B.4    Dube, P.5
  • 5
    • 79960928380 scopus 로고    scopus 로고
    • A clarification of the terms used in comparing semi-automated particle selection algorithms in Cryo-EM
    • Langlois R., Frank J. A clarification of the terms used in comparing semi-automated particle selection algorithms in Cryo-EM. J. Struct. Biol. 2011, 175:348-352.
    • (2011) J. Struct. Biol. , vol.175 , pp. 348-352
    • Langlois, R.1    Frank, J.2
  • 6
    • 32544460568 scopus 로고    scopus 로고
    • The orthogonal tilt reconstruction method: an approach to generating single-class volumes with no missing cone for ab initio reconstruction of asymmetric particles
    • Leschziner A.E., Nogales E. The orthogonal tilt reconstruction method: an approach to generating single-class volumes with no missing cone for ab initio reconstruction of asymmetric particles. J. Struct. Biol. 2006, 153:284-299.
    • (2006) J. Struct. Biol. , vol.153 , pp. 284-299
    • Leschziner, A.E.1    Nogales, E.2
  • 7
    • 0033377664 scopus 로고    scopus 로고
    • EMAN: semiautomated software for high-resolution single-particle reconstructions
    • Ludtke S.J., Baldwin P.R., Chiu W. EMAN: semiautomated software for high-resolution single-particle reconstructions. J. Struct. Biol. 1999, 128:82-97.
    • (1999) J. Struct. Biol. , vol.128 , pp. 82-97
    • Ludtke, S.J.1    Baldwin, P.R.2    Chiu, W.3
  • 8
    • 34247500374 scopus 로고    scopus 로고
    • Python for scientific computing
    • Oliphant T.E. Python for scientific computing. Comput. Sci. Eng. 2007, 9:10-20.
    • (2007) Comput. Sci. Eng. , vol.9 , pp. 10-20
    • Oliphant, T.E.1
  • 9
    • 33644847296 scopus 로고    scopus 로고
    • Estimation of variance in single-particle reconstruction using the bootstrap technique
    • Penczek P.A., Yang C., Frank J., Spahn C.M. Estimation of variance in single-particle reconstruction using the bootstrap technique. J. Struct. Biol. 2006, 154:168-183.
    • (2006) J. Struct. Biol. , vol.154 , pp. 168-183
    • Penczek, P.A.1    Yang, C.2    Frank, J.3    Spahn, C.M.4
  • 10
    • 84985231782 scopus 로고
    • Three-dimensional reconstruction from a single-exposure, random conical tilt series applied to the 50S ribosomal subunit of Escherichia coli
    • Radermacher M., Wagenknecht T., Verschoor A., Frank J. Three-dimensional reconstruction from a single-exposure, random conical tilt series applied to the 50S ribosomal subunit of Escherichia coli. J. Microsc. 1987, 146:113-136.
    • (1987) J. Microsc. , vol.146 , pp. 113-136
    • Radermacher, M.1    Wagenknecht, T.2    Verschoor, A.3    Frank, J.4
  • 11
    • 77953565575 scopus 로고    scopus 로고
    • An approach for de novo structure determination of dynamic molecular assemblies by electron cryomicroscopy
    • Sander B., Golas M.M., Luhrmann R., Stark H. An approach for de novo structure determination of dynamic molecular assemblies by electron cryomicroscopy. Structure 2010, 18:667-676.
    • (2010) Structure , vol.18 , pp. 667-676
    • Sander, B.1    Golas, M.M.2    Luhrmann, R.3    Stark, H.4
  • 12
    • 71049139404 scopus 로고    scopus 로고
    • Averaging of electron subtomograms and random conical tilt reconstructions through likelihood optimization
    • Scheres S.H., Melero R., Valle M., Carazo J.M. Averaging of electron subtomograms and random conical tilt reconstructions through likelihood optimization. Structure 2009, 17:1563-1572.
    • (2009) Structure , vol.17 , pp. 1563-1572
    • Scheres, S.H.1    Melero, R.2    Valle, M.3    Carazo, J.M.4
  • 14
    • 38049119866 scopus 로고    scopus 로고
    • Dodecamer rotor ring defines H+/ATP ratio for ATP synthesis of prokaryotic V-ATPase from Thermus thermophilus
    • Toei M., Gerle C., Nakano M., Tani K., Gyobu N., et al. Dodecamer rotor ring defines H+/ATP ratio for ATP synthesis of prokaryotic V-ATPase from Thermus thermophilus. Proc. Natl. Acad. Sci. USA 2007, 104:20256-20261.
    • (2007) Proc. Natl. Acad. Sci. USA , vol.104 , pp. 20256-20261
    • Toei, M.1    Gerle, C.2    Nakano, M.3    Tani, K.4    Gyobu, N.5
  • 16
    • 63649113687 scopus 로고    scopus 로고
    • DoG picker and tiltpicker: software tools to facilitate particle selection in single particle electron microscopy
    • Voss N.R., Yoshioka C.K., Radermacher M., Potter C.S., Carragher B. DoG picker and tiltpicker: software tools to facilitate particle selection in single particle electron microscopy. J. Struct. Biol. 2009, 166:205-213.
    • (2009) J. Struct. Biol. , vol.166 , pp. 205-213
    • Voss, N.R.1    Yoshioka, C.K.2    Radermacher, M.3    Potter, C.S.4    Carragher, B.5
  • 17
    • 33845327172 scopus 로고    scopus 로고
    • SwarmPS: rapid, semi-automated single particle selection software
    • Landsberg
    • Woolford D., Ericksson G., Rothnagel R., Muller D., Landsberg SwarmPS: rapid, semi-automated single particle selection software. J. Struct. Biol. 2007, 157:174-188.
    • (2007) J. Struct. Biol. , vol.157 , pp. 174-188
    • Woolford, D.1    Ericksson, G.2    Rothnagel, R.3    Muller, D.4
  • 18
    • 34548309353 scopus 로고    scopus 로고
    • Automation of random conical tilt and orthogonal tilt data collection using feature-based correlation
    • Yoshioka C., Pulokas J., Fellmann D., Potter C.S., Milligan R.A., et al. Automation of random conical tilt and orthogonal tilt data collection using feature-based correlation. J. Struct. Biol. 2007, 159:335-346.
    • (2007) J. Struct. Biol. , vol.159 , pp. 335-346
    • Yoshioka, C.1    Pulokas, J.2    Fellmann, D.3    Potter, C.S.4    Milligan, R.A.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.