Quartz crystal microbalance with dissipation monitoring and spectroscopic ellipsometry measurements of the phospholipid bilayer anchoring stability and kinetics of hydrophobically modified DNA oligonucleotides

Langmuir

Volumn 30, Issue 22, 2014, Pages 6525-6533

  Van Der Meulen, Stef A J ^a   Dubacheva, Galina V ^b   Dogterom, Marileen ^a,c   Richter, Ralf P ^b,d,e   Leunissen, Mirjam E ^a  

^a FOM INSTITUTE AMOLF   (Netherlands)

^b CIC BIOMAGUNE   (Spain)

^c DELFT UNIVERSITY OF TECHNOLOGY   (Netherlands)

^d UNIV GRENOBLE ALPES   (France)

^e MAX PLANCK INSTITUTE FOR INTELLIGENT SYSTEMS   (Germany)

Author keywords

[No Author keywords available]

Indexed keywords

ANCHORS; CHOLESTEROL; DNA; HYDROPHOBICITY; LIPID BILAYERS; MEDICAL APPLICATIONS; PHOSPHOLIPIDS; SPECTROSCOPIC ELLIPSOMETRY;

BIOMEDICAL APPLICATIONS; DIOLEOYLPHOSPHATIDYLCHOLINE; EFFECTIVE CONCENTRATION; QUARTZ CRYSTAL MICROBALANCE WITH DISSIPATION MONITORING; SPECTROSCOPIC ELLIPSOMETRY MEASUREMENTS; SUPPORTED LIPID BILAYERS; VISCOELASTIC MODELING; WATSON-CRICK BASE PAIRING;

OLIGONUCLEOTIDES;

1,2-OLEOYLPHOSPHATIDYLCHOLINE; DNA; LIPID BILAYER; OLIGONUCLEOTIDE; PHOSPHATIDYLCHOLINE;

CHEMICAL PHENOMENA; CHEMISTRY; LIPID BILAYER; PROCEDURES; QUARTZ CRYSTAL MICROBALANCE;

DNA; HYDROPHOBIC AND HYDROPHILIC INTERACTIONS; LIPID BILAYERS; OLIGONUCLEOTIDES; PHOSPHATIDYLCHOLINES; QUARTZ CRYSTAL MICROBALANCE TECHNIQUES;

EID: 84902133786     PISSN: 07437463     EISSN: 15205827     Source Type: Journal    
DOI: 10.1021/la500940a     Document Type: Article

References (27)

1. Beales, P.; Vanderlick, T. Application of nucleic acid-lipid conjugates for the programmable organisation of liposomal modules Adv. Colloid Interface Sci. 2014, 207, 290-305
2. Schade, M.; Berti, D.; Huster, D.; Herrmann, A.; Arbuzova, A. Lipophilic nucleic acids: A flexible construction kit for organization and functionalization of surfaces Adv. Colloid Interface Sci. 2014, 208, 235-251
3. Boutorin, A. S.; Gus'kova, L. V.; Ivanova, E. M.; Kobetz, N. D.; Zarytova, V. F.; Ryte, A. S.; Yurchenko, L. V.; Vlassov, V. V. Synthesis of alkylating oligonucleotide derivatives containing cholesterol or phenazinium residues at their 3′-terminus and their interaction with DNA within mammalian cells FEBS Lett. 1989, 254, 129-132
4. Shea, R. G.; Marsters, J. C.; Bischofberger, N. Synthesis, hybridization properties and antiviral activity of lipid-oligodeoxynucleotide conjugates Nucleic Acids Res. 1990, 18, 3777-3783
5. Krieg, A.; Tonkinson, J. Modification of antisense phosphodiester oligodeoxynucleotides by a 5′-cholesteryl moiety increases cellular association and improves efficacy Proc. Natl. Acad. Sci. U.S.A. 1993, 90, 1048-1052
6. Benkoski, J. J.; Höök, F. Lateral Mobility of Tethered Vesicle-DNA Assemblies J. Phys. Chem. B 2005, 109, 9773-9779
7. Yoshina-Ishii, C.; Boxer, S. G. Arrays of mobile tethered vesicles on supported lipid bilayers J. Am. Chem. Soc. 2003, 125, 3696-3697
8. Yoshina-Ishii, C.; Chan, Y.-H. M.; Johnson, J. M.; Kung, L. A.; Lenz, P.; Boxer, S. G. Diffusive dynamics of vesicles tethered to a fluid supported bilayer by singleparticle tracking Langmuir 2006, 22, 5682-5689
9. Chan, Y.-H. M.; van Lengerich, B.; Boxer, S. G. Lipid-anchored DNA mediates vesicle fusion as observed by lipid and content mixing Biointerphases 2008, 3, 17-21
10. Beales, P. A.; Vanderlick, T. K. DNA as membrane-bound ligand-receptor pairs: Duplex stability is tuned by intermembrane forces Biophys. J. 2009, 96, 1554-1565
11. Chung, M.; Lowe, R. D.; Chan, Y.-H. M.; Ganesan, P. V.; Boxer, S. G. DNA-tethered membranes formed by giant vesicle rupture J. Struct. Biol. 2009, 168, 190-199
12. Chung, M.; Boxer, S. G. Stability of DNA-Tethered Lipid Membranes with Mobile Tethers Langmuir 2011, 27, 5492-5497
13. van der Meulen, S. A. J.; Leunissen, M. E. Solid colloids with surface-mobile DNA linkers J. Am. Chem. Soc. 2013, 135, 15129-15134
14. Domack, A.; Prucker, O.; Rühe, J.; Johannsmann, D. Swelling of a polymer brush probed with a quartz crystal resonator Phys. Rev. E 1997, 56, 680-689
15. Johannsmann, D. Viscoelastic analysis of organic thin films on quartz resonators Macromol. Chem. Phys. 1999, 200, 501-516
16. Johannsmann, D. Viscoelastic, mechanical, and dielectric measurements on complex samples with the quartz crystal microbalance Phys. Chem. Chem. Phys. 2008, 10, 4516-4534
17. Eisele, N. B.; Andersson, F. I.; Frey, S.; Richter, R. P. Viscoelasticity of thin biomolecular films: A case study on nucleoporin phenylalanine-glycine repeats grafted to a histidine-tag capturing QCM-D sensor Biomacromolecules 2012, 13, 2322-2332
18. Carton, I.; Brisson, A. R.; Richter, R. P. Label-free detection of clustering of membrane-bound proteins Anal. Chem. 2010, 82, 9275-9281
19. De Feijter, J. A.; Benjamins, J.; Veer, F. A. Ellipsometry as a tool to study the adsorption behavior of synthetic and biopolymers at the air-water interface Biopolymers 1978, 17, 1759-1772
20. Richter, R. P.; Rodenhausen, K. B.; Eisele, N. B.; Schubert, M. Coupling Spectroscopic Ellipsometry and Quartz Crystal Microbalance to Study Organic Films at the Solid-Liquid Interface. In Ellipsometry of Functional Organic Surfaces and Films; Hinrichs, K.; Eichhorn, K. J., Eds.; Springer: Heidelberg, Germany, 2013.
21. Nicolai, T.; Dijk van, T. N.; Dijk van, J. A.; Smit, J. A. Molar mass characterization of DNA fragments by gel permeation chromatography using a low-angle laser light-scattering detector J. Chromatogr., A 1987, 389, 286-292
22. Keller, C. A.; Kasemo, B. Surface specific kinetics of lipid vesicle adsorption measured with a quartz crystal microbalance Biophys. J. 1998, 75, 1397-1402
23. Richter, R. P.; Bérat, R.; Brisson, A. Formation of solid-supported lipid bilayers: An integrated view Langmuir 2006, 22, 3497-3505
24. Hermens, W. T.; Benes, M.; Richter, R. P.; Speijer, H. Effects of flow on solute exchange between fluids and supported biosurfaces Biotechnol. Appl. Biochem. 2004, 39, 277-284
25. Murphy, M.; Rasnik, I.; Cheng, W.; Lohman, T. M.; Ha, T. Probing Single-Stranded DNA Conformational Flexibility Using Fluorescence Spectroscopy Biophys. J. 2004, 86, 2530-2537
26. Woller, J. G.; Börjesson, K.; Svedhem, S.; Albinsson, B. Reversible hybridization of DNA anchored to a lipid membrane via porphyrin Langmuir 2012, 28, 1944-1953
27. Pfeiffer, I.; Höök, F. Bivalent cholesterol-based coupling of oligonucleotides to lipid membrane assemblies J. Am. Chem. Soc. 2004, 126, 10224-10225