메뉴 건너뛰기




Volumn 21, Issue 6, 2014, Pages 466-475

In silico prediction of escherichia coli proteins targeting the host cell nucleus, with special reference to their role in colon cancer etiology

Author keywords

chronic inflammation; colon cancer; Escherichia coli; infection; protein targeting

Indexed keywords

ESCHERICHIA COLI PROTEIN;

EID: 84901975778     PISSN: 10665277     EISSN: None     Source Type: Journal    
DOI: 10.1089/cmb.2014.0001     Document Type: Article
Times cited : (12)

References (39)
  • 1
    • 84867192879 scopus 로고    scopus 로고
    • Intestinal inflammation targets cancer-inducing activity of the microbiota
    • Arthur, J.C., Perez-Chanona, E., Muhlbauer, M., et al. 2012. Intestinal inflammation targets cancer-inducing activity of the microbiota. Science 338, 120-123
    • (2012) Science , vol.338 , pp. 120-123
    • Arthur, J.C.1    Perez-Chanona, E.2    Muhlbauer, M.3
  • 3
    • 84874007506 scopus 로고    scopus 로고
    • High prevalence of mucosa-Associated E. Coli producing cyclomodulin and genotoxin in colon cancer
    • Buc, E., Dubois, D., Sauvanet, P., et al. 2013. High prevalence of mucosa-Associated E. coli producing cyclomodulin and genotoxin in colon cancer. PLoS One 8, e56964
    • (2013) PLoS One , vol.8
    • Buc, E.1    Dubois, D.2    Sauvanet, P.3
  • 4
    • 80053449258 scopus 로고    scopus 로고
    • Targeting of a chlamydial protease impedes intracellular bacterial growth
    • Christian, J.G., Heymann, J., Paschen, S.A., et al. 2011. Targeting of a chlamydial protease impedes intracellular bacterial growth. PLoS Pathog. 7, e1002283
    • (2011) PLoS Pathog , vol.7
    • Christian, J.G.1    Heymann, J.2    Paschen, S.A.3
  • 5
    • 0034331073 scopus 로고    scopus 로고
    • Finding nuclear localization signals
    • Cokol, M., Nair, R., and Rost, B. 2000. Finding nuclear localization signals. EMBO Rep. 1, 411-415
    • (2000) EMBO Rep , vol.1 , pp. 411-415
    • Cokol, M.1    Nair, R.2    Rost, B.3
  • 7
    • 77957603468 scopus 로고    scopus 로고
    • The role of bacteria in the pathogenesis of inflammatory bowel disease
    • Friswell, M., Campbell, B., and Rhodes, J. 2010. The role of bacteria in the pathogenesis of inflammatory bowel disease. Gut Liver 4, 295-306
    • (2010) Gut Liver , vol.4 , pp. 295-306
    • Friswell, M.1    Campbell, B.2    Rhodes, J.3
  • 8
    • 17644389617 scopus 로고    scopus 로고
    • Support vector machine-based method for subcellular localization of human proteins using amino acid compositions, their order, and similarity search
    • Garg, A., Bhasin, M., and Raghava, G.P. 2005. Support vector machine-based method for subcellular localization of human proteins using amino acid compositions, their order, and similarity search. J. Biol. Chem. 280, 14427-14432
    • (2005) J. Biol. Chem , vol.280 , pp. 14427-14432
    • Garg, A.1    Bhasin, M.2    Raghava, G.P.3
  • 9
    • 2942536423 scopus 로고    scopus 로고
    • Genetic alteration and gene expression modulation during cancer progression
    • Garnis, C., Buys, T.P., and Lam, W.L. 2004. Genetic alteration and gene expression modulation during cancer progression. Mol. Cancer 3, 9
    • (2004) Mol. Cancer , vol.3 , pp. 9
    • Garnis, C.1    Buys, T.P.2    Lam, W.L.3
  • 10
    • 0031794743 scopus 로고    scopus 로고
    • Protein phylogenies and signature sequences: A reappraisal of evolutionary relationships among archaebacteria, eubacteria, and eukaryotes
    • Gupta, R.S. 1998. Protein phylogenies and signature sequences: A reappraisal of evolutionary relationships among archaebacteria, eubacteria, and eukaryotes. Microbiol. Mol. Biol. Rev. 62, 1435-1491
    • (1998) Microbiol. Mol. Biol. Rev , vol.62 , pp. 1435-1491
    • Gupta, R.S.1
  • 11
    • 0025313584 scopus 로고
    • Too many transcription factors: Positive and negative interactions
    • Karin, M. 1990. Too many transcription factors: Positive and negative interactions. New Biol. 2, 126-131. (Pubitemid 20210030)
    • (1990) New Biologist , vol.2 , Issue.2 , pp. 126-131
    • Karin, M.1
  • 12
    • 44349140027 scopus 로고    scopus 로고
    • Damaged DNA binding protein 2 plays a role in breast cancer cell growth
    • Kattan, Z., Marchal, S., Brunner, E., et al. 2008. Damaged DNA binding protein 2 plays a role in breast cancer cell growth. PLoS One 3, e2002
    • (2008) PLoS One , vol.3
    • Kattan, Z.1    Marchal, S.2    Brunner, E.3
  • 13
    • 84887171375 scopus 로고    scopus 로고
    • E coli and colon cancer: Is mutY a culprit?
    • Khan, A.A., and Cash, P. 2013. E. coli and colon cancer: Is mutY a culprit?. Cancer Lett. 341, 127-131
    • (2013) Cancer Lett , vol.341 , pp. 127-131
    • Khan, A.A.1    Cash, P.2
  • 14
    • 77954564203 scopus 로고    scopus 로고
    • Bacterial infections associated with cancer: Possible implication in etiology with special reference to lateral gene transfer
    • Khan, A.A., and Shrivastava, A. 2010. Bacterial infections associated with cancer: Possible implication in etiology with special reference to lateral gene transfer. Cancer Metastasis Rev. 29, 331-337
    • (2010) Cancer Metastasis Rev , vol.29 , pp. 331-337
    • Khan, A.A.1    Shrivastava, A.2
  • 15
    • 51649083754 scopus 로고    scopus 로고
    • Design of peptide inhibitors for the importin alpha/beta nuclear import pathway by activity-based profiling
    • Kosugi, S., Hasebe, M., Entani, T., et al. 2008. Design of peptide inhibitors for the importin alpha/beta nuclear import pathway by activity-based profiling. Chem. Biol. 15, 940-949
    • (2008) Chem. Biol , vol.15 , pp. 940-949
    • Kosugi, S.1    Hasebe, M.2    Entani, T.3
  • 16
    • 67649845784 scopus 로고    scopus 로고
    • Systematic identification of cell cycle-dependent yeast nucleocytoplasmic shuttling proteins by prediction of composite motifs
    • Kosugi, S., Hasebe, M., Tomita, M., et al. 2009a. Systematic identification of cell cycle-dependent yeast nucleocytoplasmic shuttling proteins by prediction of composite motifs. Proc. Natl. Acad. Sci. USA 106, 10171-10176
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , pp. 10171-10176
    • Kosugi, S.1    Hasebe, M.2    Tomita, M.3
  • 17
    • 58649104919 scopus 로고    scopus 로고
    • Six classes of nuclear localization signals specific to different binding grooves of importin alpha
    • Kosugi, S., Hasebe, M., Matsumura, N., et al. 2009b. Six classes of nuclear localization signals specific to different binding grooves of importin alpha. J. Biol. Chem. 284, 478-485
    • (2009) J. Biol. Chem , vol.284 , pp. 478-485
    • Kosugi, S.1    Hasebe, M.2    Matsumura, N.3
  • 18
    • 34247135913 scopus 로고    scopus 로고
    • Classical nuclear localization signals: Definition, function, and interaction with importin alpha
    • Lange, A., Mills, R.E., Lange, C.J., et al. 2007. Classical nuclear localization signals: Definition, function, and interaction with importin alpha. J. Biol. Chem. 282, 5101-5105
    • (2007) J. Biol. Chem , vol.282 , pp. 5101-5105
    • Lange, A.1    Mills, R.E.2    Lange, C.J.3
  • 19
    • 33645734522 scopus 로고    scopus 로고
    • Targeting transcription factors for cancer gene therapy
    • Libermann, T.A., and Zerbini, L.F. 2006. Targeting transcription factors for cancer gene therapy. Curr. Gene Ther. 6, 17-33
    • (2006) Curr. Gene Ther , vol.6 , pp. 17-33
    • Libermann, T.A.1    Zerbini, L.F.2
  • 20
    • 0003422388 scopus 로고    scopus 로고
    • Section 11.1: Transcription termination
    • 4th ed. W.H. Freeman, New York
    • Lodish, H., Berk, A., Zipursky, S.L., et al. 2000. Section 11.1: Transcription termination. In Molecular Cell Biology, 4th ed. W.H. Freeman, New York
    • (2000) Molecular Cell Biology
    • Lodish, H.1    Berk, A.2    Zipursky, S.L.3
  • 22
    • 65849148435 scopus 로고    scopus 로고
    • Attaching and effacing Escherichia coli downregulate DNA mismatch repair protein in vitro and are associated with colorectal adenocarcinomas in humans
    • Maddocks, O.D., Short, A.J., Donnenberg, M.S., et al. 2009. Attaching and effacing Escherichia coli downregulate DNA mismatch repair protein in vitro and are associated with colorectal adenocarcinomas in humans. PLoS One 4, e5517
    • (2009) PLoS One , vol.4
    • Maddocks, O.D.1    Short, A.J.2    Donnenberg, M.S.3
  • 23
    • 84879590658 scopus 로고    scopus 로고
    • An Escherichia coli effector protein promotes host mutation via depletion of DNA mismatch repair proteins
    • Maddocks, O.D., Scanlon, K.M., and Donnenberg, M.S. 2013. An Escherichia coli effector protein promotes host mutation via depletion of DNA mismatch repair proteins. MBio, 4, e00152-13
    • (2013) MBio , vol.4
    • Maddocks, O.D.1    Scanlon, K.M.2    Donnenberg, M.S.3
  • 24
    • 73249138012 scopus 로고    scopus 로고
    • Overexpression of inhibitor of DNA-binding (ID)-1 protein related to angiogenesis in tumor advancement of ovarian cancers
    • Maw, M.K., Fujimoto, J., and Tamaya, T. 2009. Overexpression of inhibitor of DNA-binding (ID)-1 protein related to angiogenesis in tumor advancement of ovarian cancers. BMC Cancer 9, 430
    • (2009) BMC Cancer , vol.9 , pp. 430
    • Maw, M.K.1    Fujimoto, J.2    Tamaya, T.3
  • 25
    • 0032479279 scopus 로고    scopus 로고
    • Recognition of a human arrest site is conserved between RNA polymerase II and prokaryotic RNA polymerases
    • Mote, J., Jr., and Reines, D. 1998. Recognition of a human arrest site is conserved between RNA polymerase II and prokaryotic RNA polymerases. J. Biol. Chem. 273, 16843-16852
    • (1998) J. Biol. Chem , vol.273 , pp. 16843-16852
    • Mote Jr., J.1    Reines, D.2
  • 26
    • 0034641938 scopus 로고    scopus 로고
    • Crystal structures of mismatch repair protein MutS and its complex with a substrate DNA
    • Obmolova, G., Ban, C., Hsieh, P., et al. 2000. Crystal structures of mismatch repair protein MutS and its complex with a substrate DNA. Nature 407, 703-710
    • (2000) Nature , vol.407 , pp. 703-710
    • Obmolova, G.1    Ban, C.2    Hsieh, P.3
  • 27
    • 80054790280 scopus 로고    scopus 로고
    • The roles of the Methyl-CpG binding proteins in cancer
    • Parry, L., and Clarke, A.R. 2011. The roles of the Methyl-CpG binding proteins in cancer. Genes Cancer 2, 618-630
    • (2011) Genes Cancer , vol.2 , pp. 618-630
    • Parry, L.1    Clarke, A.R.2
  • 28
    • 33747872590 scopus 로고    scopus 로고
    • BaCelLo: A balanced subcellular localization predictor
    • DOI 10.1093/bioinformatics/btl222
    • Pierleoni, A., Martelli, P.L., Fariselli, P., et al. 2006. BaCelLo: A balanced subcellular localization predictor. Bioinformatics 22, e408-e416. (Pubitemid 44288310)
    • (2006) Bioinformatics , vol.22 , Issue.14
    • Pierleoni, A.1    Martelli, P.L.2    Fariselli, P.3    Casadio, R.4
  • 29
    • 0032077533 scopus 로고    scopus 로고
    • Using neural networks for prediction of the subcellular location of proteins
    • Reinhardt, A., and Hubbard, T. 1998. Using neural networks for prediction of the subcellular location of proteins. Nucleic Acids Res. 26, 2230-2236
    • (1998) Nucleic Acids Res , vol.26 , pp. 2230-2236
    • Reinhardt, A.1    Hubbard, T.2
  • 30
    • 84879528842 scopus 로고    scopus 로고
    • Bacteria-human somatic cell lateral gene transfer is enriched in cancer samples
    • Riley, D.R., Sieber, K.B., Robinson, K.M., et al. 2013. Bacteria-human somatic cell lateral gene transfer is enriched in cancer samples. PLoS Comput. Biol. 9, e1003107
    • (2013) PLoS Comput. Biol , vol.9
    • Riley, D.R.1    Sieber, K.B.2    Robinson, K.M.3
  • 31
    • 84877930369 scopus 로고    scopus 로고
    • Prediction of nuclear proteins using nuclear translocation signals proposed by probabilistic latent semantic indexing
    • Su, E.C., Chang, J.M., Cheng, C.W., et al. 2012. Prediction of nuclear proteins using nuclear translocation signals proposed by probabilistic latent semantic indexing. BMC Bioinformatics 13 Suppl 17, S13
    • (2012) BMC Bioinformatics , vol.13 , Issue.17
    • Su, E.C.1    Chang, J.M.2    Cheng, C.W.3
  • 32
    • 0344271983 scopus 로고
    • Prokaryotic and eukaryotic RNA polymerases have homologous core subunits
    • Sweetser, D., Nonet, M., and Young, R.A. 1987. Prokaryotic and eukaryotic RNA polymerases have homologous core subunits. Proc. Natl. Acad. Sci. USA 84, 1192-1196
    • (1987) Proc. Natl. Acad. Sci. USA , vol.84 , pp. 1192-1196
    • Sweetser, D.1    Nonet, M.2    Young, R.A.3
  • 34
    • 33744967486 scopus 로고    scopus 로고
    • Dynamic nuclear pore complexes: Life on the edge
    • DOI 10.1016/j.cell.2006.05.027, PII S009286740600674X
    • Tran, E.J., and Wente, S.R. 2006. Dynamic nuclear pore complexes: Life on the edge. Cell 125, 1041-1053. (Pubitemid 43866205)
    • (2006) Cell , vol.125 , Issue.6 , pp. 1041-1053
    • Tran, E.J.1    Wente, S.R.2
  • 35
    • 84874724662 scopus 로고    scopus 로고
    • Update on activities at the Universal Protein Resource (UniProt) in 2013
    • UniProt Consortium
    • UniProt Consortium. 2013. Update on activities at the Universal Protein Resource (UniProt) in 2013. Nucleic Acids Res. 41, D43-D47
    • (2013) Nucleic Acids Res , vol.41
  • 36
    • 84880013356 scopus 로고    scopus 로고
    • Expression of a LINE-1 endonuclease variant in gastric cancer: Its association with clinicopathological parameters
    • Wang, G., Gao, J., Huang, H., et al. 2013. Expression of a LINE-1 endonuclease variant in gastric cancer: Its association with clinicopathological parameters. BMC Cancer 13, 265
    • (2013) BMC Cancer , vol.13 , pp. 265
    • Wang, G.1    Gao, J.2    Huang, H.3
  • 37
    • 84868624750 scopus 로고    scopus 로고
    • Infection, inflammation and colon carcinogenesis
    • Wogan, G.N., Dedon, P.C., Tannenbaum, S.R., et al. 2012. Infection, inflammation and colon carcinogenesis. Oncotarget 3, 737-738
    • (2012) Oncotarget , vol.3 , pp. 737-738
    • Wogan, G.N.1    Dedon, P.C.2    Tannenbaum, S.R.3
  • 38
    • 84860611228 scopus 로고    scopus 로고
    • Chromodomain helicase DNA binding protein 5 plays a tumor suppressor role in human breast cancer
    • Wu, X., Zhu, Z., Li, W., et al. 2012. Chromodomain helicase DNA binding protein 5 plays a tumor suppressor role in human breast cancer. Breast Cancer Res. 14, R73
    • (2012) Breast Cancer Res , vol.14
    • Wu, X.1    Zhu, Z.2    Li, W.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.