Classification of diffuse large B cell lymphoma gene expression data based on two-layer particle swarm optimization

Proceedings - 2013 10th International Conference on Fuzzy Systems and Knowledge Discovery, FSKD 2013

Volumn , Issue , 2013, Pages 422-427

  Liu, Yajie ^a,b   Shi, Xinling ^a   Huang, Guoliang ^a   Li, Baolei ^a   Zhao, Lei ^c  

^a YUNNAN UNIVERSITY   (China)

^b Yunnan Tumor Hospital   (China)

^c KUNMING UNIVERSITY OF SCIENCE AND TECHNOLOGY   (China)

Author keywords

classification; DLBLC; gene; PSO; TLPSO

Indexed keywords

BIOINFORMATICS; CLASSIFICATION (OF INFORMATION); FUZZY SYSTEMS; GENE EXPRESSION; GENES; MOLECULAR BIOLOGY; ONCOLOGY; PATIENT TREATMENT;

CLASSIFICATION AND CLUSTERING; DIFFUSE LARGE B-CELL LYMPHOMA; DLBLC; FURTHER TREATMENTS; GENE EXPRESSION DATA; PSO; TLPSO; TRAINING SAMPLE;

PARTICLE SWARM OPTIMIZATION (PSO);

EID: 84901930573     PISSN: None     EISSN: None     Source Type: Conference Proceeding    
DOI: 10.1109/FSKD.2013.6816234     Document Type: Conference Paper

References (18)

1. Yujin Hoshida, Jean-Philippe Brunet, Pablo Tamayo, Todd R.Golub, Jill P.Mesirov, "Subclass Mapping: Identifying Common Subtypes in Independent Disease Data Set," PLoS ONE, Issue 11, 2007, pp.1-8.
2. Ash A.Alizadeh, Michael B.Eisen, R.Eric Davis, et al, "Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling," Nature, VOL 403, 2000, pp.503-511.
3. Rui Xu, Donald C. Wunsch, "Clustering Algorithms in Biomedical Research A Review," IEEE Reviews in Biomedical Engineering, VOL.3, 2010, pp.120-154.
4. Vincent S, Tseng and Ching-Pin Kao, "Efficiently Mining Gene Expression Data via a Novel Parameterless Clustering Method," IEEE/ACM Transactions On Computaional Biology And Bioinformatics, Vol.2, 2005, pp.355-365.
5. Sushmita Mitra, Yoichi Hayashi, "Bioinformatics With Soft Computing," IEEE Transactions On Systems, Man and Cybernetics-Part C: Application and Reviews, Vol.36, 2006, pp.616-635.
6. Bing Liu, Chunru Wan, Lipo Wang, "An Efficient Semi-Unsupervised Gene Selection Method via Spectral Biclustering," IEEE Transactions On Nanobioscience, Vol.5, 2006, pp.110-114.
7. Lipo Wang, Feng Chu, Wei Xie, "Accurate Cancer Classification Using Expressions of Very Few Genes," IEEE/ACM Transactions On Computaional Biology And Bioinformatics, Vol.4, 2007, pp.40-53.
8. Sameh A. Salem, Lindsay B. Jack, Asoke K. Nandi, "Investigation of Self-Organizing Oscillator Networks for Use in Clustering Microarray Data," IEEE Transactions On Nanobioscience, Vol.7, 2008, pp.65-79.
9. Jun Sun, Wei Chen, Wei Fang, Xiaojun Wun, Wenbo Xu, "Gene expression data analysis with the clustering method based on an improved quantum-behaved Particle Swarm Optimization," Engineering Applications of Artificial Intelligence, 25, 2012, pp.376-391.
10. T.R.Golub, D.K.Slonim, P.Tamayo, C.Huard, M.Gaasenbeek, J.P.Mesirov, H.Coller, M.L.Loh, J.R.Downing, M.A.Caligiuri, C.D.Bloomfield, E.S.Lander, "Molecular Classification of Cancer: Class Discovery and Class Prediction by Gene Expression Monitoring," Science, VOL 286, 1999, pp.531-537.
11. Zhang H, Yu CY, Singer B, "Cell and tumor classification using gene expression data: construction of forests," PNAS, VOL.100, 2003, pp.4168 - 4172.
12. Khan J, Wei JS, Ringner M, et al, "Classification and diagnostic prediction of cancers using gene expression profiling and artificial neural networks," Nature Medicine, 2001, pp.673-679.
13. Terrence S.Furey, Nello Cristianini, Nigel Duffy, et al, "Support vector machine classification and validation of cancer tissue samples using microarray expression data," BIOINFORMATICS, Vol.16, 2000, pp.906-914.
14. Jianjun Yu, Jindan Yu, Arpit A.Almal, et al, "Feature Selection and Molecular Classification of Canver Using Genetic Programming," Neoplasia, Vol.9, 2007, pp.292-303.
15. Yajie Liu, Xinling Shi, Zhenzhou An, "Classification of Leukemia Gene Expression Data Using Particle Swarm Optimization," The Sixth International Conference on Genetic and Evolutionary Computing, 2012, Kitakyushu, Japan.
16. Kennedy, J., Eberhart, R.C, "Particle Swarm Optimization," Proceedings of the 1995 IEEE International Conference on Neural Networks, Vol.4, 1995, pp.1942-1948.
17. Chia-Chong Chen, "Two-layer particle swarm potimization for unconstrained optimization probles", Applied Soft Computing, 2011, pp.295-304.
18. Stefano Monti, Kerry J,Savage, Jeffery L.Kutok, et al, "Molecular profiling of diffuse large B-cell lymphoma identifies robust subtypes including one characterized by host inflammatory response", BLOOD, vol.105, 2005, pp.1951-1960.