-
1
-
-
79960559167
-
A growth phenotyping pipeline for Arabidopsis thaliana integrating image analysis and rosette area modeling for robust quantification of genotype effects
-
Arvidsson S, Pérez-Rodríguez P, Mueller-Roeber B (2011) A growth phenotyping pipeline for Arabidopsis thaliana integrating image analysis and rosette area modeling for robust quantification of genotype effects. New Phytol 191: 895-907
-
(2011)
New Phytol
, vol.191
, pp. 895-907
-
-
Arvidsson, S.1
Pérez-Rodríguez, P.2
Mueller-Roeber, B.3
-
2
-
-
27644473529
-
Coincident detection of crop water stress, nitrogen status and canopy density using ground-based multispectral data
-
In PC Robert, RH Rust, WE Larson, eds, Precision Agriculture Centre, Department of Soil, Water and, Climate, University of Minnesota, Bloomington, MN
-
Barnes EM, Clarke TR, Richards SE, Colaizzi PD, Haberland J, Kostrzewski M, Waller P, Choi C, Riley E, Thompson T (2001) Coincident detection of crop water stress, nitrogen status and canopy density using ground-based multispectral data. In PC Robert, RH Rust, WE Larson, eds, Proceedings of the Fifth International Conference on Precision Agriculture. Precision Agriculture Centre, Department of Soil, Water and, Climate, University of Minnesota, Bloomington, MN, pp 1-15
-
(2001)
Proceedings of the Fifth International Conference on Precision Agriculture
, pp. 1-15
-
-
Barnes, E.M.1
Clarke, T.R.2
Richards, S.E.3
Colaizzi, P.D.4
Haberland, J.5
Kostrzewski, M.6
Waller, P.7
Choi, C.8
Riley, E.9
Thompson, T.10
-
4
-
-
63549105207
-
Diel growth cycle of isolated leaf discs analyzed with a novel, high-throughput three-dimensional imaging method is identical to that of intact leaves
-
Biskup B, Scharr H, Fischbach A, Wiese-Klinkenberg A, Schurr U, Walter A (2009) Diel growth cycle of isolated leaf discs analyzed with a novel, high-throughput three-dimensional imaging method is identical to that of intact leaves. Plant Physiol 149: 1452-1461
-
(2009)
Plant Physiol
, vol.149
, pp. 1452-1461
-
-
Biskup, B.1
Scharr, H.2
Fischbach, A.3
Wiese-Klinkenberg, A.4
Schurr, U.5
Walter, A.6
-
5
-
-
49249101759
-
LAMINA: A tool for rapid quantification of leaf size and shape parameters
-
Bylesjö M, Segura V, Soolanayakanahally RY, Rae AM, Trygg J, Gustafsson P, Jansson S, Street NR (2008) LAMINA: a tool for rapid quantification of leaf size and shape parameters. BMC Plant Biol 8: 82
-
(2008)
BMC Plant Biol
, vol.8
, pp. 82
-
-
Bylesjö, M.1
Segura, V.2
Soolanayakanahally, R.Y.3
Rae, A.M.4
Trygg, J.5
Gustafsson, P.6
Jansson, S.7
Street, N.R.8
-
6
-
-
79958074246
-
Three-dimensional root phenotyping with a novel imaging and software platform
-
Clark RT, MacCurdy RB, Jung JK, Shaff JE, McCouch SR, Aneshansley DJ, Kochian LV (2011) Three-dimensional root phenotyping with a novel imaging and software platform. Plant Physiol 156: 455-465
-
(2011)
Plant Physiol
, vol.156
, pp. 455-465
-
-
Clark, R.T.1
McCurdy, R.B.2
Jung, J.K.3
Shaff, J.E.4
McCouch, S.R.5
Aneshansley, D.J.6
Kochian, L.V.7
-
7
-
-
84875426911
-
Nextgeneration phenotyping: Requirements and strategies for enhancing our understanding of genotype-phenotype relationships and its relevance to crop improvement
-
Cobb JN, Declerck G, Greenberg A, Clark R, McCouch S (2013) Nextgeneration phenotyping: requirements and strategies for enhancing our understanding of genotype-phenotype relationships and its relevance to crop improvement. Theor Appl Genet 126: 867-887
-
(2013)
Theor Appl Genet
, vol.126
, pp. 867-887
-
-
Cobb, J.N.1
Declerck, G.2
Greenberg, A.3
Clark, R.4
McCouch, S.5
-
8
-
-
84868329144
-
Rosette tracker: An open source image analysis tool for automatic quantification of genotype effects
-
De Vylder J, Vandenbussche F, Hu Y, Philips W, Van Der Straeten D (2012) Rosette tracker: an open source image analysis tool for automatic quantification of genotype effects. Plant Physiol 160: 1149-1159
-
(2012)
Plant Physiol
, vol.160
, pp. 1149-1159
-
-
De Vylder, J.1
Vandenbussche, F.2
Hu, Y.3
Philips, W.4
Van Der Straeten, D.5
-
9
-
-
78649908781
-
High-throughput plant phenotyping: Data acquisition, transformation, and analysis
-
In D Edwards, J Stajich, D Hansen, eds, Springer, New York
-
Eberius M, Lima-Guerra J (2009) High-throughput plant phenotyping: data acquisition, transformation, and analysis. In D Edwards, J Stajich, D Hansen, eds, Bioinformatics. Springer, New York, pp 259-278
-
(2009)
Bioinformatics
, pp. 259-278
-
-
Eberius, M.1
Lima-Guerra, J.2
-
10
-
-
1942502343
-
Plant bioinformatics: From genome to phenome
-
Edwards D, Batley J (2004) Plant bioinformatics: from genome to phenome. Trends Biotechnol 22: 232-237
-
(2004)
Trends Biotechnol
, vol.22
, pp. 232-237
-
-
Edwards, D.1
Batley, J.2
-
11
-
-
84877682482
-
Future scenarios for plant phenotyping
-
Fiorani F, Schurr U (2013) Future scenarios for plant phenotyping. Annu Rev Plant Biol 64: 267-291
-
(2013)
Annu Rev Plant Biol
, vol.64
, pp. 267-291
-
-
Fiorani, F.1
Schurr, U.2
-
12
-
-
83055180602
-
Phenomics: Technologies to relieve the phenotyping bottleneck
-
Furbank RT, Tester M (2011) Phenomics: technologies to relieve the phenotyping bottleneck. Trends Plant Sci 16: 635-644
-
(2011)
Trends Plant Sci
, vol.16
, pp. 635-644
-
-
Furbank, R.T.1
Tester, M.2
-
13
-
-
79351470088
-
Accurate inference of shoot biomass from high-throughput images of cereal plants
-
Golzarian MR, Frick RA, Rajendran K, Berger B, Roy S, Tester M, Lun DS (2011) Accurate inference of shoot biomass from high-throughput images of cereal plants. Plant Methods 7: 2
-
(2011)
Plant Methods
, vol.7
, pp. 2
-
-
Golzarian, M.R.1
Frick, R.A.2
Rajendran, K.3
Berger, B.4
Roy, S.5
Tester, M.6
Lun, D.S.7
-
14
-
-
33645051449
-
PHENOPSIS, an automated platform for reproducible phenotyping of plant responses to soil water deficit in Arabidopsis thaliana permitted the identification of an accession with low sensitivity to soil water deficit
-
Granier C, Aguirrezabal L, Chenu K, Cookson SJ, Dauzat M, Hamard P, Thioux JJ, Rolland G, Bouchier-Combaud S, Lebaudy A, et al (2006) PHENOPSIS, an automated platform for reproducible phenotyping of plant responses to soil water deficit in Arabidopsis thaliana permitted the identification of an accession with low sensitivity to soil water deficit. New Phytol 169: 623-635
-
(2006)
New Phytol
, vol.169
, pp. 623-635
-
-
Granier, C.1
Aguirrezabal, L.2
Chenu, K.3
Cookson, S.J.4
Dauzat, M.5
Hamard, P.6
Thioux, J.J.7
Rolland, G.8
Bouchier-Combaud, S.9
Lebaudy, A.10
-
15
-
-
84868279590
-
PhenoPhyte: A flexible affordable method to quantify 2D phenotypes from imagery
-
Green JM, Appel H, Rehrig EM, Harnsomburana J, Chang JF, Balint-Kurti P, Shyu CR (2012) PhenoPhyte: a flexible affordable method to quantify 2D phenotypes from imagery. Plant Methods 8: 45
-
(2012)
Plant Methods
, vol.8
, pp. 45
-
-
Green, J.M.1
Appel, H.2
Rehrig, E.M.3
Harnsomburana, J.4
Chang, J.F.5
Balint-Kurti, P.6
Shyu, C.R.7
-
16
-
-
79955830859
-
HTPheno: An image analysis pipeline for high-throughput plant phenotyping
-
Hartmann A, Czauderna T, Hoffmann R, Stein N, Schreiber F (2011) HTPheno: an image analysis pipeline for high-throughput plant phenotyping. BMC Bioinformatics 12: 148
-
(2011)
BMC Bioinformatics
, vol.12
, pp. 148
-
-
Hartmann, A.1
Czauderna, T.2
Hoffmann, R.3
Stein, N.4
Schreiber, F.5
-
18
-
-
70449686674
-
Simultaneous phenotyping of leaf growth and chlorophyll fluorescence via GROWSCREEN FLUORO allows detection of stress tolerance in Arabidopsis thaliana and other rosette plants
-
Jansen M, Gilmer F, Biskup B, Nagel K, Rascher U, Fischbach A, Briem S, Dreissen G, Tittmann S, Braun S, et al (2009) Simultaneous phenotyping of leaf growth and chlorophyll fluorescence via GROWSCREEN FLUORO allows detection of stress tolerance in Arabidopsis thaliana and other rosette plants. Funct Plant Biol 36: 902
-
(2009)
Funct Plant Biol
, vol.36
, pp. 902
-
-
Jansen, M.1
Gilmer, F.2
Biskup, B.3
Nagel, K.4
Rascher, U.5
Fischbach, A.6
Briem, S.7
Dreissen, G.8
Tittmann, S.9
Braun, S.10
-
19
-
-
33645241830
-
VANTED: A system for advanced data analysis and visualization in the context of biological networks
-
Junker BH, Klukas C, Schreiber F (2006) VANTED: a system for advanced data analysis and visualization in the context of biological networks. BMC Bioinformatics 7: 109
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 109
-
-
Junker, B.H.1
Klukas, C.2
Schreiber, F.3
-
20
-
-
84867661862
-
Analysis of high-throughput plant image data with the information system IAP
-
Klukas C, Pape JM, Entzian A (2012) Analysis of high-throughput plant image data with the information system IAP. J Integr Bioinform 9: 191
-
(2012)
J Integr Bioinform
, vol.9
, pp. 191
-
-
Klukas, C.1
Pape, J.M.2
Entzian, A.3
-
22
-
-
0001457509
-
Some methods for classification and analysis of multivariate observations
-
In LM Le Cam, J Neyman, eds, University of California Press, Berkeley, CA
-
Macqueen JB (1967) Some methods for classification and analysis of multivariate observations. In LM Le Cam, J Neyman, eds, Proceedings of the Fifth Berkeley Symposium on Math, Statistics, and Probability, Vol 1. University of California Press, Berkeley, CA, pp 281-297
-
(1967)
Proceedings of the Fifth Berkeley Symposium on Math, Statistics, and Probability
, vol.1
, pp. 281-297
-
-
McQueen, J.B.1
-
23
-
-
84868704489
-
GROWSCREEN-Rhizo is a novel phenotyping robot enabling simultaneous measurements of root and shoot growth for plants grown in soil-filled rhizotrons
-
Nagel KA, Putz A, Gilmer F, Heinz K, Fischbach A, Pfeifer J, Faget M, Blossfeld S, Ernst M, Dimaki C, et al (2012) GROWSCREEN-Rhizo is a novel phenotyping robot enabling simultaneous measurements of root and shoot growth for plants grown in soil-filled rhizotrons. Funct Plant Biol 39: 891-904
-
(2012)
Funct Plant Biol
, vol.39
, pp. 891-904
-
-
Nagel, K.A.1
Putz, A.2
Gilmer, F.3
Heinz, K.4
Fischbach, A.5
Pfeifer, J.6
Faget, M.7
Blossfeld, S.8
Ernst, M.9
Dimaki, C.10
-
24
-
-
84881004262
-
RootNav: Navigating images of complex root architectures
-
Pound MP, French AP, Atkinson JA, Wells DM, Bennett MJ, Pridmore T (2013) RootNav: navigating images of complex root architectures. Plant Physiol 162: 1802-1814
-
(2013)
Plant Physiol
, vol.162
, pp. 1802-1814
-
-
Pound, M.P.1
French, A.P.2
Atkinson, J.A.3
Wells, D.M.4
Bennett, M.J.5
Pridmore, T.6
-
25
-
-
84901812030
-
TraitMill (TM): A high throughput functional genomics platform for the phenotypic analysis of cereals
-
Reuzeau C (2007) TraitMill (TM): a high throughput functional genomics platform for the phenotypic analysis of cereals. In Vitro Cell Dev Biol Anim 43: S4
-
(2007)
In Vitro Cell Dev Biol Anim
, vol.43
-
-
Reuzeau, C.1
-
26
-
-
79952816408
-
TraitMill: A discovery engine for identifying yield-enhancement genes in cereals
-
Reuzeau C, Pen J, Frankard V, de Wolf J, Peerbolte R, Broekaert W (2005) TraitMill: a discovery engine for identifying yield-enhancement genes in cereals. Fenzi Zhiwu Yuzhong 3: 7534
-
(2005)
Fenzi Zhiwu Yuzhong
, vol.3
, pp. 7534
-
-
Reuzeau, C.1
Pen, J.2
Frankard, V.3
de Wolf, J.4
Peerbolte, R.5
Broekaert, W.6
-
27
-
-
79960202320
-
Integration and visualisation of multimodal biological data
-
In I Grosse, S Neumann, S Posch, F Schreiber, PF Stadler, eds, Martin Luther University, Halle-Wittenberg, Germany
-
Rohn H, Klukas C, Schreiber F (2009) Integration and visualisation of multimodal biological data. In I Grosse, S Neumann, S Posch, F Schreiber, PF Stadler, eds, Proceedings of the German Conference on Bioinformatics. Martin Luther University, Halle-Wittenberg, Germany, pp 105-115
-
(2009)
Proceedings of the German Conference on Bioinformatics
, pp. 105-115
-
-
Rohn, H.1
Klukas, C.2
Schreiber, F.3
-
28
-
-
79952753533
-
Association of "greenness" in corn with yield and leaf nitrogen concentration
-
Rorie RL, Purcell LC, Mozaffari M, Karcher DE, King CA, Marsh MC, Longer DE (2011) Association of "greenness" in corn with yield and leaf nitrogen concentration. Agron J 103: 529-535
-
(2011)
Agron J
, vol.103
, pp. 529-535
-
-
Rorie, R.L.1
Purcell, L.C.2
Mozaffari, M.3
Karcher, D.E.4
King, C.A.5
Marsh, M.C.6
Longer, D.E.7
-
29
-
-
33846079112
-
Leaf growth rate per unit thermal time follows QTL-dependent daily patterns in hundreds of maize lines under naturally fluctuating conditions
-
Sadok W, Naudin P, Boussuge B, Muller B, Welcker C, Tardieu F (2007) Leaf growth rate per unit thermal time follows QTL-dependent daily patterns in hundreds of maize lines under naturally fluctuating conditions. Plant Cell Environ 30: 135-146
-
(2007)
Plant Cell Environ
, vol.30
, pp. 135-146
-
-
Sadok, W.1
Naudin, P.2
Boussuge, B.3
Muller, B.4
Welcker, C.5
Tardieu, F.6
-
30
-
-
0040355653
-
Adaptive document image binarization
-
Sauvola J, Pietikainen M (2000) Adaptive document image binarization. Pattern Recognit 33: 225-236
-
(2000)
Pattern Recognit
, vol.33
, pp. 225-236
-
-
Sauvola, J.1
Pietikainen, M.2
-
32
-
-
0033525598
-
Erect leaves and photosynthesis in rice
-
Sinclair TR, Sheehy JE (1999) Erect leaves and photosynthesis in rice. Science 283: 1455
-
(1999)
Science
, vol.283
, pp. 1455
-
-
Sinclair, T.R.1
Sheehy, J.E.2
-
33
-
-
0031141035
-
SUSAN: A new approach to low level image processing
-
Smith SM, Brady JM (1997) SUSAN: a new approach to low level image processing. Int J Comput Vis 23: 45-78
-
(1997)
Int J Comput Vis
, vol.23
, pp. 45-78
-
-
Smith, S.M.1
Brady, J.M.2
-
34
-
-
84870835894
-
SmartGrain: Highthroughput phenotyping software for measuring seed shape through image analysis
-
Tanabata T, Shibaya T, Hori K, Ebana K, Yano M (2012) SmartGrain: highthroughput phenotyping software for measuring seed shape through image analysis. Plant Physiol 160: 1871-1880
-
(2012)
Plant Physiol
, vol.160
, pp. 1871-1880
-
-
Tanabata, T.1
Shibaya, T.2
Hori, K.3
Ebana, K.4
Yano, M.5
-
35
-
-
79251561130
-
Genome-wide association study of leaf architecture in the maize nested association mapping population
-
Tian F, Bradbury PJ, Brown PJ, Hung H, Sun Q, Flint-Garcia S, Rocheford TR, McMullen MD, Holland JB, Buckler ES (2011) Genome-wide association study of leaf architecture in the maize nested association mapping population. Nat Genet 43: 159-162
-
(2011)
Nat Genet
, vol.43
, pp. 159-162
-
-
Tian, F.1
Bradbury, P.J.2
Brown, P.J.3
Hung, H.4
Sun, Q.5
Flint-Garcia, S.6
Rocheford, T.R.7
McMullen, M.D.8
Holland, J.B.9
Buckler, E.S.10
-
36
-
-
84876687614
-
Phenoscope: An automated large-scale phenotyping platform offering high spatial homogeneity
-
Tisné S, Serrand Y, Bach L, Gilbault E, Ben Ameur R, Balasse H, Voisin R, Bouchez D, Durand-Tardif M, Guerche P, et al (2013) Phenoscope: an automated large-scale phenotyping platform offering high spatial homogeneity. Plant J 74: 534-544
-
(2013)
Plant J
, vol.74
, pp. 534-544
-
-
Tisné, S.1
Serrand, Y.2
Bach, L.3
Gilbault, E.4
Ben Ameur, R.5
Balasse, H.6
Voisin, R.7
Bouchez, D.8
Durand-Tardif, M.9
Guerche, P.10
-
37
-
-
33947418028
-
Dynamics of seedling growth acclimation towards altered light conditions can be quantified via GROWSCREEN: A setup and procedure designed for rapid optical phenotyping of different plant species
-
Walter A, Scharr H, Gilmer F, Zierer R, Nagel KA, Ernst M, Wiese A, Virnich O, Christ MM, Uhlig B, et al (2007) Dynamics of seedling growth acclimation towards altered light conditions can be quantified via GROWSCREEN: a setup and procedure designed for rapid optical phenotyping of different plant species. New Phytol 174: 447-455
-
(2007)
New Phytol
, vol.174
, pp. 447-455
-
-
Walter, A.1
Scharr, H.2
Gilmer, F.3
Zierer, R.4
Nagel, K.A.5
Ernst, M.6
Wiese, A.7
Virnich, O.8
Christ, M.M.9
Uhlig, B.10
-
38
-
-
65249097704
-
HYPOTrace: Image analysis software for measuring hypocotyl growth and shape demonstrated on Arabidopsis seedlings undergoing photomorphogenesis
-
Wang L, Uilecan IV, Assadi AH, Kozmik CA, Spalding EP (2009) HYPOTrace: image analysis software for measuring hypocotyl growth and shape demonstrated on Arabidopsis seedlings undergoing photomorphogenesis. Plant Physiol 149: 1632-1637
-
(2009)
Plant Physiol
, vol.149
, pp. 1632-1637
-
-
Wang, L.1
Uilecan, I.V.2
Assadi, A.H.3
Kozmik, C.A.4
Spalding, E.P.5
-
39
-
-
38649136254
-
LeafAnalyser: A computational method for rapid and large-scale analyses of leaf shape variation
-
Weight C, Parnham D, Waites R (2008) LeafAnalyser: a computational method for rapid and large-scale analyses of leaf shape variation. Plant J 53: 578-586
-
(2008)
Plant J
, vol.53
, pp. 578-586
-
-
Weight, C.1
Parnham, D.2
Waites, R.3
|