Indexing graphs for path queries with applications in genome research

IEEE/ACM Transactions on Computational Biology and Bioinformatics

Volumn 11, Issue 2, 2014, Pages 375-388

  Sirén, Jouni ^a   Välimäki, Niko ^b   Mäkinen, Veli ^b  

^a UNIVERSITY OF CHILE   (Chile)

^b UNIVERSITY OF HELSINKI   (Finland)

Author keywords

extended Burrows Wheeler transform; graph indexing; Pan genome indexing; read alignment; variation calling

Indexed keywords

BACKWARD WAVE TUBES; GENES; GRAPHIC METHODS; INDEXING (OF INFORMATION);

ALIGNMENT ACCURACY; BURROWS WHEELER TRANSFORM; GENERIC APPROACH; GRAPH INDEXING; GRAPH REPRESENTATION; PHYLOGENETIC TREES; SPLICING GRAPHS; VARIATION CALLING;

DIRECTED GRAPHS;

DNA SEQUENCE; GENETIC DATABASE; GENOMICS; HUMAN; PHYLOGENY; PROCEDURES; SEQUENCE ALIGNMENT; SINGLE NUCLEOTIDE POLYMORPHISM;

DATABASES, GENETIC; GENOMICS; HUMANS; PHYLOGENY; POLYMORPHISM, SINGLE NUCLEOTIDE; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA;

EID: 84901744821     PISSN: 15455963     EISSN: None     Source Type: Journal    
DOI: 10.1109/TCBB.2013.2297101     Document Type: Article

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