-
1
-
-
7244245762
-
Finishing the euchromatic sequence of the human genome
-
10.1038/nature03001, 15496913, International Human Genome Sequencing Consortium
-
International Human Genome Sequencing Consortium Finishing the euchromatic sequence of the human genome. Nature 2004, 431(7011):931-945. 10.1038/nature03001, 15496913, International Human Genome Sequencing Consortium.
-
(2004)
Nature
, vol.431
, Issue.7011
, pp. 931-945
-
-
-
2
-
-
84859229689
-
Three essential ribonucleases-RNase Y, J1, and III-control the abundance of a majority of Bacillus subtilis mRNAs
-
10.1371/journal.pgen.1002520, 3297567, 22412379
-
Durand S, Gilet L, Bessières P, Nicolas P, Condon C. Three essential ribonucleases-RNase Y, J1, and III-control the abundance of a majority of Bacillus subtilis mRNAs. PLoS Genet 2012, 8(3):e1002520. 10.1371/journal.pgen.1002520, 3297567, 22412379.
-
(2012)
PLoS Genet
, vol.8
, Issue.3
-
-
Durand, S.1
Gilet, L.2
Bessières, P.3
Nicolas, P.4
Condon, C.5
-
3
-
-
79955608587
-
Analysis of Escherichia coli RNase E and RNase III activity in vivo using tiling microarrays
-
10.1093/nar/gkq1242, 3082872, 21149258
-
Stead MB, Marshburn S, Mohanty BK, Mitra J, Pena Castillo L, Ray D, van Bakel H, Hughes TR, Kushner SR. Analysis of Escherichia coli RNase E and RNase III activity in vivo using tiling microarrays. Nucleic Acids Res 2011, 39(8):3188-3203. 10.1093/nar/gkq1242, 3082872, 21149258.
-
(2011)
Nucleic Acids Res
, vol.39
, Issue.8
, pp. 3188-3203
-
-
Stead, M.B.1
Marshburn, S.2
Mohanty, B.K.3
Mitra, J.4
Pena Castillo, L.5
Ray, D.6
van Bakel, H.7
Hughes, T.R.8
Kushner, S.R.9
-
4
-
-
0034710943
-
Polynucleotide phosphorylase functions both as a 3'right-arrow 5' exonuclease and a poly(A) polymerase in Escherichia coli
-
10.1073/pnas.220295997, 17278, 11035800
-
Mohanty BK, Kushner SR. Polynucleotide phosphorylase functions both as a 3'right-arrow 5' exonuclease and a poly(A) polymerase in Escherichia coli. Proc Natl Acad Sci U S A 2000, 97(22):11966-11971. 10.1073/pnas.220295997, 17278, 11035800.
-
(2000)
Proc Natl Acad Sci U S A
, vol.97
, Issue.22
, pp. 11966-11971
-
-
Mohanty, B.K.1
Kushner, S.R.2
-
5
-
-
34249101864
-
5'-to-3'exoribonuclease activity in bacteria: role of RNase J1 in rRNA maturation and 5' stability of mRNA
-
10.1016/j.cell.2007.02.051, 17512403
-
Mathy N, Benard L, Pellegrini O, Daou R, Wen T, Condon C. 5'-to-3'exoribonuclease activity in bacteria: role of RNase J1 in rRNA maturation and 5' stability of mRNA. Cell 2007, 129(4):681-692. 10.1016/j.cell.2007.02.051, 17512403.
-
(2007)
Cell
, vol.129
, Issue.4
, pp. 681-692
-
-
Mathy, N.1
Benard, L.2
Pellegrini, O.3
Daou, R.4
Wen, T.5
Condon, C.6
-
6
-
-
33845286132
-
Crystal structure of TTHA0252 from Thermus thermophilus HB8, a RNA degradation protein of the metallo-beta-lactamase superfamily
-
10.1093/jb/mvj183, 16945939
-
Ishikawa H, Nakagawa N, Kuramitsu S, Masui R. Crystal structure of TTHA0252 from Thermus thermophilus HB8, a RNA degradation protein of the metallo-beta-lactamase superfamily. J Biochem 2006, 140(4):535-542. 10.1093/jb/mvj183, 16945939.
-
(2006)
J Biochem
, vol.140
, Issue.4
, pp. 535-542
-
-
Ishikawa, H.1
Nakagawa, N.2
Kuramitsu, S.3
Masui, R.4
-
7
-
-
0015955554
-
Description of Thermus thermophilus (Yoshida and Oshima) comb. nov., a Nonsporulating Thermophilic Bacterium from a Japanese thermal spa
-
Oshima T, Imahori K. Description of Thermus thermophilus (Yoshida and Oshima) comb. nov., a Nonsporulating Thermophilic Bacterium from a Japanese thermal spa. Int J Syst Bacteriol 1974, 24(1):102-112.
-
(1974)
Int J Syst Bacteriol
, vol.24
, Issue.1
, pp. 102-112
-
-
Oshima, T.1
Imahori, K.2
-
8
-
-
34248359835
-
Transcription activation mediated by a cyclic AMP receptor protein from Thermus thermophilus HB8
-
10.1128/JB.01739-06, 1913326, 17369302
-
Shinkai A, Kira S, Nakagawa N, Kashihara A, Kuramitsu S, Yokoyama S. Transcription activation mediated by a cyclic AMP receptor protein from Thermus thermophilus HB8. J Bacteriol 2007, 189(10):3891-3901. 10.1128/JB.01739-06, 1913326, 17369302.
-
(2007)
J Bacteriol
, vol.189
, Issue.10
, pp. 3891-3901
-
-
Shinkai, A.1
Kira, S.2
Nakagawa, N.3
Kashihara, A.4
Kuramitsu, S.5
Yokoyama, S.6
-
9
-
-
79958166755
-
TetR-family transcriptional repressor Thermus thermophilus FadR controls fatty acid degradation
-
Agari Y, Agari K, Sakamoto K, Kuramitsu S, Shinkai A. TetR-family transcriptional repressor Thermus thermophilus FadR controls fatty acid degradation. Microbiology 2011, 157(Pt 6):1589-1601.
-
(2011)
Microbiology
, vol.157
, Issue.PART 6
, pp. 1589-1601
-
-
Agari, Y.1
Agari, K.2
Sakamoto, K.3
Kuramitsu, S.4
Shinkai, A.5
-
10
-
-
84866314912
-
Transcriptional repression mediated by a TetR Family Protein, PfmR, from Thermus thermophilus HB8
-
10.1128/JB.00668-12, 3415517, 22753056
-
Agari Y, Sakamoto K, Kuramitsu S, Shinkai A. Transcriptional repression mediated by a TetR Family Protein, PfmR, from Thermus thermophilus HB8. J Bacteriol 2012, 194(17):4630-4641. 10.1128/JB.00668-12, 3415517, 22753056.
-
(2012)
J Bacteriol
, vol.194
, Issue.17
, pp. 4630-4641
-
-
Agari, Y.1
Sakamoto, K.2
Kuramitsu, S.3
Shinkai, A.4
-
11
-
-
70450222923
-
RNase Y, a novel endoribonuclease, initiates riboswitch turnover in Bacillus subtilis
-
10.1038/emboj.2009.283, 2782095, 19779461
-
Shahbabian K, Jamalli A, Zig L, Putzer H. RNase Y, a novel endoribonuclease, initiates riboswitch turnover in Bacillus subtilis. EMBO J 2009, 28(22):3523-3533. 10.1038/emboj.2009.283, 2782095, 19779461.
-
(2009)
EMBO J
, vol.28
, Issue.22
, pp. 3523-3533
-
-
Shahbabian, K.1
Jamalli, A.2
Zig, L.3
Putzer, H.4
-
12
-
-
84865165883
-
RNA degradation in Bacillus subtilis: an interplay of essential endo- and exoribonucleases
-
10.1111/j.1365-2958.2012.08072.x, 22568516
-
Lehnik-Habrink M, Lewis RJ, Mader U, Stulke J. RNA degradation in Bacillus subtilis: an interplay of essential endo- and exoribonucleases. Mol Microbiol 2012, 84(6):1005-1017. 10.1111/j.1365-2958.2012.08072.x, 22568516.
-
(2012)
Mol Microbiol
, vol.84
, Issue.6
, pp. 1005-1017
-
-
Lehnik-Habrink, M.1
Lewis, R.J.2
Mader, U.3
Stulke, J.4
-
13
-
-
38849144533
-
Structural insights into the dual activity of RNase J
-
10.1038/nsmb.1376, 18204464
-
de la Sierra-Gallay I, Zig L, Jamalli A, Putzer H. Structural insights into the dual activity of RNase J. Nat Struct Mol Biol 2008, 15(2):206-212. 10.1038/nsmb.1376, 18204464.
-
(2008)
Nat Struct Mol Biol
, vol.15
, Issue.2
, pp. 206-212
-
-
de la Sierra-Gallay, I.1
Zig, L.2
Jamalli, A.3
Putzer, H.4
-
14
-
-
77955149193
-
The critical role of RNA processing and degradation in the control of gene expression
-
Arraiano CM, Andrade JM, Domingues S, Guinote IB, Malecki M, Matos RG, Moreira RN, Pobre V, Reis FP, Saramago M, Silva IJ, Viegas SC. The critical role of RNA processing and degradation in the control of gene expression. FEMS Microbiol Rev 2010, 34(5):883-923.
-
(2010)
FEMS Microbiol Rev
, vol.34
, Issue.5
, pp. 883-923
-
-
Arraiano, C.M.1
Andrade, J.M.2
Domingues, S.3
Guinote, I.B.4
Malecki, M.5
Matos, R.G.6
Moreira, R.N.7
Pobre, V.8
Reis, F.P.9
Saramago, M.10
Silva, I.J.11
Viegas, S.C.12
-
15
-
-
17844361922
-
Ribonucleases J1 and J2: two novel endoribonucleases in B.subtilis with functional homology to E.coli RNase E
-
10.1093/nar/gki505, 1079966, 15831787
-
Even S, Pellegrini O, Zig L, Labas V, Vinh J, Brechemmier-Baey D, Putzer H. Ribonucleases J1 and J2: two novel endoribonucleases in B.subtilis with functional homology to E.coli RNase E. Nucleic Acids Res 2005, 33(7):2141-2152. 10.1093/nar/gki505, 1079966, 15831787.
-
(2005)
Nucleic Acids Res
, vol.33
, Issue.7
, pp. 2141-2152
-
-
Even, S.1
Pellegrini, O.2
Zig, L.3
Labas, V.4
Vinh, J.5
Brechemmier-Baey, D.6
Putzer, H.7
-
16
-
-
84873465400
-
Conserved bacterial RNase YbeY plays key roles in 70S ribosome quality control and 16S rRNA maturation
-
10.1016/j.molcel.2012.11.025, 3570609, 23273979
-
Jacob AI, Kohrer C, Davies BW, RajBhandary UL, Walker GC. Conserved bacterial RNase YbeY plays key roles in 70S ribosome quality control and 16S rRNA maturation. Mol Cell 2013, 49(3):427-438. 10.1016/j.molcel.2012.11.025, 3570609, 23273979.
-
(2013)
Mol Cell
, vol.49
, Issue.3
, pp. 427-438
-
-
Jacob, A.I.1
Kohrer, C.2
Davies, B.W.3
RajBhandary, U.L.4
Walker, G.C.5
-
17
-
-
0027220698
-
Promiscuous exoribonucleases of Escherichia coli
-
204908, 8335617
-
Deutscher MP. Promiscuous exoribonucleases of Escherichia coli. J Bacteriol 1993, 175:4577-4583. 204908, 8335617.
-
(1993)
J Bacteriol
, vol.175
, pp. 4577-4583
-
-
Deutscher, M.P.1
-
18
-
-
61349178533
-
Ribonuclease H: molecular diversities, substrate binding domains, and catalytic mechanism of the prokaryotic enzymes
-
10.1111/j.1742-4658.2009.06907.x, 19228197
-
Tadokoro T, Kanaya S. Ribonuclease H: molecular diversities, substrate binding domains, and catalytic mechanism of the prokaryotic enzymes. FEBS J 2009, 276(6):1482-1493. 10.1111/j.1742-4658.2009.06907.x, 19228197.
-
(2009)
FEBS J
, vol.276
, Issue.6
, pp. 1482-1493
-
-
Tadokoro, T.1
Kanaya, S.2
-
19
-
-
70349587050
-
The RNase P family
-
10.4161/rna.6.4.9241, 19738420
-
Ellis JC, Brown JW. The RNase P family. RNA Biol 2009, 6(4):362-369. 10.4161/rna.6.4.9241, 19738420.
-
(2009)
RNA Biol
, vol.6
, Issue.4
, pp. 362-369
-
-
Ellis, J.C.1
Brown, J.W.2
-
20
-
-
56249145105
-
Structure of the guide-strand-containing argonaute silencing complex
-
10.1038/nature07315, 18754009
-
Wang Y, Sheng G, Juranek S, Tuschl T, Patel DJ. Structure of the guide-strand-containing argonaute silencing complex. Nature 2008, 456(7219):209-213. 10.1038/nature07315, 18754009.
-
(2008)
Nature
, vol.456
, Issue.7219
, pp. 209-213
-
-
Wang, Y.1
Sheng, G.2
Juranek, S.3
Tuschl, T.4
Patel, D.J.5
-
21
-
-
78951489764
-
Role of RecJ-like protein with 5'-3'exonuclease activity in oligo(deoxy)nucleotide degradation
-
10.1074/jbc.M110.161596, 3024776, 21087930
-
Wakamatsu T, Kim K, Uemura Y, Nakagawa N, Kuramitsu S, Masui R. Role of RecJ-like protein with 5'-3'exonuclease activity in oligo(deoxy)nucleotide degradation. J Biol Chem 2011, 286(4):2807-2816. 10.1074/jbc.M110.161596, 3024776, 21087930.
-
(2011)
J Biol Chem
, vol.286
, Issue.4
, pp. 2807-2816
-
-
Wakamatsu, T.1
Kim, K.2
Uemura, Y.3
Nakagawa, N.4
Kuramitsu, S.5
Masui, R.6
-
22
-
-
33646739111
-
The NYN domains: novel predicted RNAses with a PIN domain-like fold
-
10.4161/rna.3.1.2548, 17114934
-
Anantharaman V, Aravind L. The NYN domains: novel predicted RNAses with a PIN domain-like fold. RNA Biol 2006, 3(1):18-27. 10.4161/rna.3.1.2548, 17114934.
-
(2006)
RNA Biol
, vol.3
, Issue.1
, pp. 18-27
-
-
Anantharaman, V.1
Aravind, L.2
-
23
-
-
0033575262
-
Ribonuclease activity of rat liver perchloric acid-soluble protein, a potent inhibitor of protein synthesis
-
10.1074/jbc.274.29.20688, 10400702
-
Morishita R, Kawagoshi A, Sawasaki T, Madin K, Ogasawara T, Oka T, Endo Y. Ribonuclease activity of rat liver perchloric acid-soluble protein, a potent inhibitor of protein synthesis. J Biol Chem 1999, 274(29):20688-20692. 10.1074/jbc.274.29.20688, 10400702.
-
(1999)
J Biol Chem
, vol.274
, Issue.29
, pp. 20688-20692
-
-
Morishita, R.1
Kawagoshi, A.2
Sawasaki, T.3
Madin, K.4
Ogasawara, T.5
Oka, T.6
Endo, Y.7
-
24
-
-
58149236691
-
The exosome contains domains with specific endoribonuclease, exoribonuclease and cytoplasmic mRNA decay activities
-
10.1038/nsmb.1528, 2615074, 19060898
-
Schaeffer D, Tsanova B, Barbas A, Reis FP, Dastidar EG, Sanchez-Rotunno M, Arraiano CM, van Hoof A. The exosome contains domains with specific endoribonuclease, exoribonuclease and cytoplasmic mRNA decay activities. Nat Struct Mol Biol 2009, 16(1):56-62. 10.1038/nsmb.1528, 2615074, 19060898.
-
(2009)
Nat Struct Mol Biol
, vol.16
, Issue.1
, pp. 56-62
-
-
Schaeffer, D.1
Tsanova, B.2
Barbas, A.3
Reis, F.P.4
Dastidar, E.G.5
Sanchez-Rotunno, M.6
Arraiano, C.M.7
van Hoof, A.8
-
25
-
-
62049085366
-
The N-terminal PIN domain of the exosome subunit Rrp44 harbors endonuclease activity and tethers Rrp44 to the yeast core exosome
-
2651783, 19129231
-
Schneider C, Leung E, Brown J, Tollervey D. The N-terminal PIN domain of the exosome subunit Rrp44 harbors endonuclease activity and tethers Rrp44 to the yeast core exosome. Nucleic Acids Res 2009, 37(4):1127-1140. 2651783, 19129231.
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.4
, pp. 1127-1140
-
-
Schneider, C.1
Leung, E.2
Brown, J.3
Tollervey, D.4
-
26
-
-
45349093488
-
Junction ribonuclease: a ribonuclease HII orthologue from Thermus thermophilus HB8 prefers the RNA-DNA junction to the RNA/DNA heteroduplex
-
10.1042/BJ20080140, 18318663
-
Ohtani N, Tomita M, Itaya M. Junction ribonuclease: a ribonuclease HII orthologue from Thermus thermophilus HB8 prefers the RNA-DNA junction to the RNA/DNA heteroduplex. Biochem J 2008, 412(3):517-526. 10.1042/BJ20080140, 18318663.
-
(2008)
Biochem J
, vol.412
, Issue.3
, pp. 517-526
-
-
Ohtani, N.1
Tomita, M.2
Itaya, M.3
-
27
-
-
69849089441
-
Degradation of nanoRNA is performed by multiple redundant RNases in Bacillus subtilis
-
10.1093/nar/gkp527, 2731908, 19553197
-
Fang M, Zeisberg WM, Condon C, Ogryzko V, Danchin A, Mechold U. Degradation of nanoRNA is performed by multiple redundant RNases in Bacillus subtilis. Nucleic Acids Res 2009, 37(15):5114-5125. 10.1093/nar/gkp527, 2731908, 19553197.
-
(2009)
Nucleic Acids Res
, vol.37
, Issue.15
, pp. 5114-5125
-
-
Fang, M.1
Zeisberg, W.M.2
Condon, C.3
Ogryzko, V.4
Danchin, A.5
Mechold, U.6
-
28
-
-
78649366670
-
Role of Escherichia coli YbeY, a highly conserved protein, in rRNA processing
-
10.1111/j.1365-2958.2010.07351.x, 2959132, 20807199
-
Davies BW, Kohrer C, Jacob AI, Simmons LA, Zhu J, Aleman LM, Rajbhandary UL, Walker GC. Role of Escherichia coli YbeY, a highly conserved protein, in rRNA processing. Mol Microbiol 2010, 78(2):506-518. 10.1111/j.1365-2958.2010.07351.x, 2959132, 20807199.
-
(2010)
Mol Microbiol
, vol.78
, Issue.2
, pp. 506-518
-
-
Davies, B.W.1
Kohrer, C.2
Jacob, A.I.3
Simmons, L.A.4
Zhu, J.5
Aleman, L.M.6
Rajbhandary, U.L.7
Walker, G.C.8
-
29
-
-
79959486063
-
A highly conserved protein of unknown function in Sinorhizobium meliloti affects sRNA regulation similar to Hfq
-
10.1093/nar/gkr060, 3113577, 21325267
-
Pandey SP, Minesinger BK, Kumar J, Walker GC. A highly conserved protein of unknown function in Sinorhizobium meliloti affects sRNA regulation similar to Hfq. Nucleic Acids Res 2011, 39(11):4691-4708. 10.1093/nar/gkr060, 3113577, 21325267.
-
(2011)
Nucleic Acids Res
, vol.39
, Issue.11
, pp. 4691-4708
-
-
Pandey, S.P.1
Minesinger, B.K.2
Kumar, J.3
Walker, G.C.4
-
30
-
-
67649933665
-
Comprehensive comparative-genomic analysis of type 2 toxin-antitoxin systems and related mobile stress response systems in prokaryotes
-
10.1186/1745-6150-4-19, 2701414, 19493340
-
Makarova KS, Wolf YI, Koonin EV. Comprehensive comparative-genomic analysis of type 2 toxin-antitoxin systems and related mobile stress response systems in prokaryotes. Biol Direct 2009, 4:19. 10.1186/1745-6150-4-19, 2701414, 19493340.
-
(2009)
Biol Direct
, vol.4
, pp. 19
-
-
Makarova, K.S.1
Wolf, Y.I.2
Koonin, E.V.3
-
31
-
-
79956157571
-
Evolution and classification of the CRISPR-Cas systems
-
10.1038/nrmicro2577, 3380444, 21552286
-
Makarova KS, Haft DH, Barrangou R, Brouns SJ, Charpentier E, Horvath P, Moineau S, Mojica FJ, Wolf YI, Yakunin AF, van der Oost J, Koonin EV. Evolution and classification of the CRISPR-Cas systems. Nat Rev Microbiol 2011, 9(6):467-477. 10.1038/nrmicro2577, 3380444, 21552286.
-
(2011)
Nat Rev Microbiol
, vol.9
, Issue.6
, pp. 467-477
-
-
Makarova, K.S.1
Haft, D.H.2
Barrangou, R.3
Brouns, S.J.4
Charpentier, E.5
Horvath, P.6
Moineau, S.7
Mojica, F.J.8
Wolf, Y.I.9
Yakunin, A.F.10
van der Oost, J.11
Koonin, E.V.12
-
32
-
-
79958848350
-
Recognition and maturation of effector RNAs in a CRISPR interference pathway
-
10.1038/nsmb.2042, 21572444
-
Gesner EM, Schellenberg MJ, Garside EL, George MM, Macmillan AM. Recognition and maturation of effector RNAs in a CRISPR interference pathway. Nat Struct Mol Biol 2011, 18(6):688-692. 10.1038/nsmb.2042, 21572444.
-
(2011)
Nat Struct Mol Biol
, vol.18
, Issue.6
, pp. 688-692
-
-
Gesner, E.M.1
Schellenberg, M.J.2
Garside, E.L.3
George, M.M.4
Macmillan, A.M.5
-
33
-
-
0021013526
-
The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme
-
10.1016/0092-8674(83)90117-4, 6197186
-
Guerrier-Takada C, Gardiner K, Marsh T, Pace N, Altman S. The RNA moiety of ribonuclease P is the catalytic subunit of the enzyme. Cell 1983, 35(3):849-857. 10.1016/0092-8674(83)90117-4, 6197186.
-
(1983)
Cell
, vol.35
, Issue.3
, pp. 849-857
-
-
Guerrier-Takada, C.1
Gardiner, K.2
Marsh, T.3
Pace, N.4
Altman, S.5
-
34
-
-
0345668475
-
Essential Bacillus subtilis genes
-
10.1073/pnas.0730515100, 153615, 12682299
-
Kobayashi K, Ehrlich SD, Albertini A, Amati G, Andersen KK, Arnaud M, Asai K, Ashikaga S, Aymerich S, Bessieres P, Boland F, Brignell SC, Bron S, Bunai K, Chapuis J, Christiansen LC, Danchin A, Débarbouille M, Dervyn E, Deuerling E, Devine K, Devine SK, Dreesen O, Errington J, Fillinger S, Foster SJ, Fujita Y, Galizzi A, Gardan R, Eschevins C, et al. Essential Bacillus subtilis genes. Proc Natl Acad Sci U S A 2003, 100(8):4678-4683. 10.1073/pnas.0730515100, 153615, 12682299.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, Issue.8
, pp. 4678-4683
-
-
Kobayashi, K.1
Ehrlich, S.D.2
Albertini, A.3
Amati, G.4
Andersen, K.K.5
Arnaud, M.6
Asai, K.7
Ashikaga, S.8
Aymerich, S.9
Bessieres, P.10
Boland, F.11
Brignell, S.C.12
Bron, S.13
Bunai, K.14
Chapuis, J.15
Christiansen, L.C.16
Danchin, A.17
Débarbouille, M.18
Dervyn, E.19
Deuerling, E.20
Devine, K.21
Devine, S.K.22
Dreesen, O.23
Errington, J.24
Fillinger, S.25
Foster, S.J.26
Fujita, Y.27
Galizzi, A.28
Gardan, R.29
Eschevins, C.30
more..
-
35
-
-
75149117735
-
The ribonucleases J1 and J2 are essential for growth and have independent roles in mRNA decay in Streptococcus pyogenes
-
Bugrysheva JV, Scott JR. The ribonucleases J1 and J2 are essential for growth and have independent roles in mRNA decay in Streptococcus pyogenes. Mol Microbiol 2010, 75(3):731-743.
-
(2010)
Mol Microbiol
, vol.75
, Issue.3
, pp. 731-743
-
-
Bugrysheva, J.V.1
Scott, J.R.2
-
36
-
-
67650147953
-
RNase J is involved in the 5'-end maturation of 16S rRNA and 23S rRNA in Sinorhizobium meliloti
-
10.1016/j.febslet.2009.06.026, 19540834
-
Madhugiri R, Evguenieva-Hackenberg E. RNase J is involved in the 5'-end maturation of 16S rRNA and 23S rRNA in Sinorhizobium meliloti. FEBS Lett 2009, 583(14):2339-2342. 10.1016/j.febslet.2009.06.026, 19540834.
-
(2009)
FEBS Lett
, vol.583
, Issue.14
, pp. 2339-2342
-
-
Madhugiri, R.1
Evguenieva-Hackenberg, E.2
-
37
-
-
0033551137
-
Oligoribonuclease is an essential component of the mRNA decay pathway
-
10.1073/pnas.96.8.4372, 16339, 10200269
-
Ghosh S, Deutscher MP. Oligoribonuclease is an essential component of the mRNA decay pathway. Proc Natl Acad Sci U S A 1999, 96(8):4372-4377. 10.1073/pnas.96.8.4372, 16339, 10200269.
-
(1999)
Proc Natl Acad Sci U S A
, vol.96
, Issue.8
, pp. 4372-4377
-
-
Ghosh, S.1
Deutscher, M.P.2
-
38
-
-
33644841796
-
RNase R affects gene expression in stationary phase: regulation of ompA
-
10.1111/j.1365-2958.2006.05092.x, 16556233
-
Andrade JM, Cairrao F, Arraiano CM. RNase R affects gene expression in stationary phase: regulation of ompA. Mol Microbiol 2006, 60(1):219-228. 10.1111/j.1365-2958.2006.05092.x, 16556233.
-
(2006)
Mol Microbiol
, vol.60
, Issue.1
, pp. 219-228
-
-
Andrade, J.M.1
Cairrao, F.2
Arraiano, C.M.3
-
39
-
-
9144220291
-
MiaB protein is a bifunctional radical-S-adenosylmethionine enzyme involved in thiolation and methylation of tRNA
-
10.1074/jbc.M408562200, 15339930
-
Pierrel F, Douki T, Fontecave M, Atta M. MiaB protein is a bifunctional radical-S-adenosylmethionine enzyme involved in thiolation and methylation of tRNA. J Biol Chem 2004, 279(46):47555-47563. 10.1074/jbc.M408562200, 15339930.
-
(2004)
J Biol Chem
, vol.279
, Issue.46
, pp. 47555-47563
-
-
Pierrel, F.1
Douki, T.2
Fontecave, M.3
Atta, M.4
-
40
-
-
80053595149
-
Acetylation regulates the stability of a bacterial protein: growth stage-dependent modification of RNase R
-
10.1016/j.molcel.2011.06.037, 3191462, 21981926
-
Liang W, Malhotra A, Deutscher MP. Acetylation regulates the stability of a bacterial protein: growth stage-dependent modification of RNase R. Mol Cell 2011, 44(1):160-166. 10.1016/j.molcel.2011.06.037, 3191462, 21981926.
-
(2011)
Mol Cell
, vol.44
, Issue.1
, pp. 160-166
-
-
Liang, W.1
Malhotra, A.2
Deutscher, M.P.3
-
41
-
-
77954574615
-
Structural and functional characterization of the transcriptional repressor CsoR from Thermus thermophilus HB8
-
Sakamoto K, Agari Y, Agari K, Kuramitsu S, Shinkai A. Structural and functional characterization of the transcriptional repressor CsoR from Thermus thermophilus HB8. Microbiology 2010, 156(Pt 7):1993-2005.
-
(2010)
Microbiology
, vol.156
, Issue.PART 7
, pp. 1993-2005
-
-
Sakamoto, K.1
Agari, Y.2
Agari, K.3
Kuramitsu, S.4
Shinkai, A.5
-
42
-
-
80052907486
-
Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria
-
3153061, 21833341
-
Gregersen LH, Bryant DA, Frigaard NU. Mechanisms and evolution of oxidative sulfur metabolism in green sulfur bacteria. Front Microbiol 2011, 2:116. 3153061, 21833341.
-
(2011)
Front Microbiol
, vol.2
, pp. 116
-
-
Gregersen, L.H.1
Bryant, D.A.2
Frigaard, N.U.3
-
43
-
-
33646249963
-
Cell-cell signaling in Xanthomonas campestris involves an HD-GYP domain protein that functions in cyclic di-GMP turnover
-
10.1073/pnas.0600345103, 1458946, 16611728
-
Ryan RP, Fouhy Y, Lucey JF, Crossman LC, Spiro S, He YW, Zhang LH, Heeb S, Camara M, Williams P, Dow JM. Cell-cell signaling in Xanthomonas campestris involves an HD-GYP domain protein that functions in cyclic di-GMP turnover. Proc Natl Acad Sci U S A 2006, 103(17):6712-6717. 10.1073/pnas.0600345103, 1458946, 16611728.
-
(2006)
Proc Natl Acad Sci U S A
, vol.103
, Issue.17
, pp. 6712-6717
-
-
Ryan, R.P.1
Fouhy, Y.2
Lucey, J.F.3
Crossman, L.C.4
Spiro, S.5
He, Y.W.6
Zhang, L.H.7
Heeb, S.8
Camara, M.9
Williams, P.10
Dow, J.M.11
-
44
-
-
73149087453
-
Transcription profile of Thermus thermophilus CRISPR systems after phage infection
-
10.1016/j.jmb.2009.10.057, 19891975
-
Agari Y, Sakamoto K, Tamakoshi M, Oshima T, Kuramitsu S, Shinkai A. Transcription profile of Thermus thermophilus CRISPR systems after phage infection. J Mol Biol 2010, 395(2):270-281. 10.1016/j.jmb.2009.10.057, 19891975.
-
(2010)
J Mol Biol
, vol.395
, Issue.2
, pp. 270-281
-
-
Agari, Y.1
Sakamoto, K.2
Tamakoshi, M.3
Oshima, T.4
Kuramitsu, S.5
Shinkai, A.6
-
45
-
-
33749645818
-
Functional analysis of 11 putative essential genes in Bacillus subtilis
-
Hunt A, Rawlins JP, Thomaides HB, Errington J. Functional analysis of 11 putative essential genes in Bacillus subtilis. Microbiology 2006, 152(Pt 10):2895-2907.
-
(2006)
Microbiology
, vol.152
, Issue.PART 10
, pp. 2895-2907
-
-
Hunt, A.1
Rawlins, J.P.2
Thomaides, H.B.3
Errington, J.4
-
46
-
-
33845719997
-
Maturation of the 5' end of Bacillus subtilis 16S rRNA by the essential ribonuclease YkqC/RNase J1
-
10.1111/j.1365-2958.2006.05499.x, 17229210
-
Britton RA, Wen T, Schaefer L, Pellegrini O, Uicker WC, Mathy N, Tobin C, Daou R, Szyk J, Condon C. Maturation of the 5' end of Bacillus subtilis 16S rRNA by the essential ribonuclease YkqC/RNase J1. Mol Microbiol 2007, 63(1):127-138. 10.1111/j.1365-2958.2006.05499.x, 17229210.
-
(2007)
Mol Microbiol
, vol.63
, Issue.1
, pp. 127-138
-
-
Britton, R.A.1
Wen, T.2
Schaefer, L.3
Pellegrini, O.4
Uicker, W.C.5
Mathy, N.6
Tobin, C.7
Daou, R.8
Szyk, J.9
Condon, C.10
-
47
-
-
51649091711
-
MRNA processing by RNases J1 and J2 affects Bacillus subtilis gene expression on a global scale
-
10.1111/j.1365-2958.2008.06400.x, 18713320
-
Mader U, Zig L, Kretschmer J, Homuth G, Putzer H. mRNA processing by RNases J1 and J2 affects Bacillus subtilis gene expression on a global scale. Mol Microbiol 2008, 70(1):183-196. 10.1111/j.1365-2958.2008.06400.x, 18713320.
-
(2008)
Mol Microbiol
, vol.70
, Issue.1
, pp. 183-196
-
-
Mader, U.1
Zig, L.2
Kretschmer, J.3
Homuth, G.4
Putzer, H.5
-
48
-
-
0023865082
-
Role of the protein moiety of ribonuclease P, a ribonucleoprotein enzyme
-
10.1126/science.3122322, 3122322
-
Reich C, Olsen GJ, Pace B, Pace NR. Role of the protein moiety of ribonuclease P, a ribonucleoprotein enzyme. Science 1988, 239(4836):178-181. 10.1126/science.3122322, 3122322.
-
(1988)
Science
, vol.239
, Issue.4836
, pp. 178-181
-
-
Reich, C.1
Olsen, G.J.2
Pace, B.3
Pace, N.R.4
-
49
-
-
79959331396
-
NanoRNAs prime transcription initiation in vivo
-
10.1016/j.molcel.2011.06.005, 3130991, 21700226
-
Goldman SR, Sharp JS, Vvedenskaya IO, Livny J, Dove SL, Nickels BE. NanoRNAs prime transcription initiation in vivo. Mol Cell 2011, 42(6):817-825. 10.1016/j.molcel.2011.06.005, 3130991, 21700226.
-
(2011)
Mol Cell
, vol.42
, Issue.6
, pp. 817-825
-
-
Goldman, S.R.1
Sharp, J.S.2
Vvedenskaya, I.O.3
Livny, J.4
Dove, S.L.5
Nickels, B.E.6
-
50
-
-
77957830494
-
An extreme thermophile, Thermus thermophilus, is a polyploid bacterium
-
10.1128/JB.00662-10, 2950507, 20729360
-
Ohtani N, Tomita M, Itaya M. An extreme thermophile, Thermus thermophilus, is a polyploid bacterium. J Bacteriol 2010, 192(20):5499-5505. 10.1128/JB.00662-10, 2950507, 20729360.
-
(2010)
J Bacteriol
, vol.192
, Issue.20
, pp. 5499-5505
-
-
Ohtani, N.1
Tomita, M.2
Itaya, M.3
-
51
-
-
0029585753
-
Isolation and characterization of a Novel Perchloric Acid-soluble protein inhibiting cell-free protein synthesis
-
10.1074/jbc.270.50.30060, 8530410
-
Tsuji H. Isolation and characterization of a Novel Perchloric Acid-soluble protein inhibiting cell-free protein synthesis. J Biol Chem 1995, 270(50):30060-30067. 10.1074/jbc.270.50.30060, 8530410.
-
(1995)
J Biol Chem
, vol.270
, Issue.50
, pp. 30060-30067
-
-
Tsuji, H.1
-
52
-
-
77953610439
-
Crystal structure of the PSPTO-PSP protein from Pseudomonas syringae pv. tomato str. DC3000 in complex with D-glucose
-
10.1016/j.bbrc.2010.05.071, 20478270
-
Zhang HM, Gao Y, Li M, Chang WR. Crystal structure of the PSPTO-PSP protein from Pseudomonas syringae pv. tomato str. DC3000 in complex with D-glucose. Biochem Biophys Res Commun 2010, 397(1):82-86. 10.1016/j.bbrc.2010.05.071, 20478270.
-
(2010)
Biochem Biophys Res Commun
, vol.397
, Issue.1
, pp. 82-86
-
-
Zhang, H.M.1
Gao, Y.2
Li, M.3
Chang, W.R.4
-
53
-
-
77954214431
-
Crystal structure and ligand binding of the MID domain of a eukaryotic Argonaute protein
-
10.1038/embor.2010.81, 2897117, 20539312
-
Boland A, Tritschler F, Heimstadt S, Izaurralde E, Weichenrieder O. Crystal structure and ligand binding of the MID domain of a eukaryotic Argonaute protein. EMBO Rep 2010, 11(7):522-527. 10.1038/embor.2010.81, 2897117, 20539312.
-
(2010)
EMBO Rep
, vol.11
, Issue.7
, pp. 522-527
-
-
Boland, A.1
Tritschler, F.2
Heimstadt, S.3
Izaurralde, E.4
Weichenrieder, O.5
-
54
-
-
13444283630
-
Interaction network containing conserved and essential protein complexes in Escherichia coli
-
10.1038/nature03239, 15690043
-
Butland G, Peregrin-Alvarez JM, Li J, Yang W, Yang X, Canadien V, Starostine A, Richards D, Beattie B, Krogan N, Davey M, Parkinson J, Greenblatt J, Emili A. Interaction network containing conserved and essential protein complexes in Escherichia coli. Nature 2005, 433(7025):531-537. 10.1038/nature03239, 15690043.
-
(2005)
Nature
, vol.433
, Issue.7025
, pp. 531-537
-
-
Butland, G.1
Peregrin-Alvarez, J.M.2
Li, J.3
Yang, W.4
Yang, X.5
Canadien, V.6
Starostine, A.7
Richards, D.8
Beattie, B.9
Krogan, N.10
Davey, M.11
Parkinson, J.12
Greenblatt, J.13
Emili, A.14
-
55
-
-
0025353046
-
Identification of phosphate starvation-inducible genes in Escherichia coli K-12 by DNA sequence analysis of psi::lacZ(Mu d1) transcriptional fusions
-
209124, 2160940
-
Metcalf WW, Steed PM, Wanner BL. Identification of phosphate starvation-inducible genes in Escherichia coli K-12 by DNA sequence analysis of psi::lacZ(Mu d1) transcriptional fusions. J Bacteriol 1990, 172(6):3191-3200. 209124, 2160940.
-
(1990)
J Bacteriol
, vol.172
, Issue.6
, pp. 3191-3200
-
-
Metcalf, W.W.1
Steed, P.M.2
Wanner, B.L.3
-
56
-
-
0027416514
-
Molecular analysis of the phoH gene, belonging to the phosphate regulon in Escherichia coli
-
193217, 8444794
-
Kim SK, Makino K, Amemura M, Shinagawa H, Nakata A. Molecular analysis of the phoH gene, belonging to the phosphate regulon in Escherichia coli. J Bacteriol 1993, 175(5):1316-1324. 193217, 8444794.
-
(1993)
J Bacteriol
, vol.175
, Issue.5
, pp. 1316-1324
-
-
Kim, S.K.1
Makino, K.2
Amemura, M.3
Shinagawa, H.4
Nakata, A.5
-
57
-
-
84866851215
-
RNase H2-initiated ribonucleotide excision repair
-
10.1016/j.molcel.2012.06.035, 3470915, 22864116
-
Sparks JL, Chon H, Cerritelli SM, Kunkel TA, Johansson E, Crouch RJ, Burgers PM. RNase H2-initiated ribonucleotide excision repair. Mol Cell 2012, 47(6):980-986. 10.1016/j.molcel.2012.06.035, 3470915, 22864116.
-
(2012)
Mol Cell
, vol.47
, Issue.6
, pp. 980-986
-
-
Sparks, J.L.1
Chon, H.2
Cerritelli, S.M.3
Kunkel, T.A.4
Johansson, E.5
Crouch, R.J.6
Burgers, P.M.7
-
58
-
-
39149142575
-
CRISPR-a widespread system that provides acquired resistance against phages in bacteria and archaea
-
10.1038/nrmicro1793, 18157154
-
Sorek R, Kunin V, Hugenholtz P. CRISPR-a widespread system that provides acquired resistance against phages in bacteria and archaea. Nat Rev Microbiol 2008, 6(3):181-186. 10.1038/nrmicro1793, 18157154.
-
(2008)
Nat Rev Microbiol
, vol.6
, Issue.3
, pp. 181-186
-
-
Sorek, R.1
Kunin, V.2
Hugenholtz, P.3
-
59
-
-
0023186464
-
Induction of proteins in response to low temperature in Escherichia coli
-
212099, 3553157
-
Jones PG, VanBogelen RA, Neidhardt FC. Induction of proteins in response to low temperature in Escherichia coli. J Bacteriol 1987, 169(5):2092-2095. 212099, 3553157.
-
(1987)
J Bacteriol
, vol.169
, Issue.5
, pp. 2092-2095
-
-
Jones, P.G.1
VanBogelen, R.A.2
Neidhardt, F.C.3
-
60
-
-
0344394977
-
Cold shock induction of RNase R and its role in the maturation of the quality control mediator SsrA/tmRNA
-
10.1046/j.1365-2958.2003.03766.x, 14622421
-
Cairrão F, Cruz A, Mori H, Arraiano CM. Cold shock induction of RNase R and its role in the maturation of the quality control mediator SsrA/tmRNA. Mol Microbiol 2003, 50(4):1349-1360. 10.1046/j.1365-2958.2003.03766.x, 14622421.
-
(2003)
Mol Microbiol
, vol.50
, Issue.4
, pp. 1349-1360
-
-
Cairrão, F.1
Cruz, A.2
Mori, H.3
Arraiano, C.M.4
-
61
-
-
0038182527
-
RNA polyadenylation and degradation in cyanobacteria are similar to the chloroplast but different from Escherichia coli
-
10.1074/jbc.M211571200, 12601000
-
Rott R, Zipor G, Portnoy V, Liveanu V, Schuster G. RNA polyadenylation and degradation in cyanobacteria are similar to the chloroplast but different from Escherichia coli. J Biol Chem 2003, 278(18):15771-15777. 10.1074/jbc.M211571200, 12601000.
-
(2003)
J Biol Chem
, vol.278
, Issue.18
, pp. 15771-15777
-
-
Rott, R.1
Zipor, G.2
Portnoy, V.3
Liveanu, V.4
Schuster, G.5
-
62
-
-
0345097567
-
The Streptomyces coelicolor polynucleotide phosphorylase homologue, and not the putative poly(a) polymerase, can polyadenylate RNA
-
10.1128/JB.185.24.7273-7278.2003, 296257, 14645289
-
Sohlberg B, Huang J, Cohen SN. The Streptomyces coelicolor polynucleotide phosphorylase homologue, and not the putative poly(a) polymerase, can polyadenylate RNA. J Bacteriol 2003, 185(24):7273-7278. 10.1128/JB.185.24.7273-7278.2003, 296257, 14645289.
-
(2003)
J Bacteriol
, vol.185
, Issue.24
, pp. 7273-7278
-
-
Sohlberg, B.1
Huang, J.2
Cohen, S.N.3
-
63
-
-
84879414849
-
Argonaute proteins: functional insights and emerging roles
-
10.1038/nrg3462, 23732335
-
Meister G. Argonaute proteins: functional insights and emerging roles. Nat Rev Genet 2013, 14(7):447-459. 10.1038/nrg3462, 23732335.
-
(2013)
Nat Rev Genet
, vol.14
, Issue.7
, pp. 447-459
-
-
Meister, G.1
-
64
-
-
0035850879
-
Disruption of Thermus thermophilus genes by homologous recombination using a thermostable kanamycin-resistant marker
-
10.1016/S0014-5793(01)02926-X, 11602251
-
Hashimoto Y, Yano T, Kuramitsu S, Kagamiyama H. Disruption of Thermus thermophilus genes by homologous recombination using a thermostable kanamycin-resistant marker. FEBS Lett 2001, 506(3):231-234. 10.1016/S0014-5793(01)02926-X, 11602251.
-
(2001)
FEBS Lett
, vol.506
, Issue.3
, pp. 231-234
-
-
Hashimoto, Y.1
Yano, T.2
Kuramitsu, S.3
Kagamiyama, H.4
-
65
-
-
0032730861
-
Directed evolution of thermostable kanamycin-resistance gene: a convenient selection marker for Thermus thermophilus
-
10.1093/oxfordjournals.jbchem.a022539, 10544290
-
Hoseki J, Yano T, Koyama Y, Kuramitsu S, Kagamiyama H. Directed evolution of thermostable kanamycin-resistance gene: a convenient selection marker for Thermus thermophilus. J Biochem 1999, 126(5):951-956. 10.1093/oxfordjournals.jbchem.a022539, 10544290.
-
(1999)
J Biochem
, vol.126
, Issue.5
, pp. 951-956
-
-
Hoseki, J.1
Yano, T.2
Koyama, Y.3
Kuramitsu, S.4
Kagamiyama, H.5
-
66
-
-
0042424602
-
Statistical significance for genomewide studies
-
10.1073/pnas.1530509100, 170937, 12883005
-
Storey JD, Tibshirani R. Statistical significance for genomewide studies. Proc Natl Acad Sci U S A 2003, 100(16):9440-9445. 10.1073/pnas.1530509100, 170937, 12883005.
-
(2003)
Proc Natl Acad Sci U S A
, vol.100
, Issue.16
, pp. 9440-9445
-
-
Storey, J.D.1
Tibshirani, R.2
|