메뉴 건너뛰기




Volumn 50, Issue 4, 2003, Pages 1349-1360

Cold shock induction of RNase R and its role in the maturation of the quality control mediator SsrA/tmRNA

Author keywords

[No Author keywords available]

Indexed keywords

COLD SHOCK PROTEIN; MESSENGER RNA; RIBONUCLEASE; RIBONUCLEASE R; UNCLASSIFIED DRUG;

EID: 0344394977     PISSN: 0950382X     EISSN: None     Source Type: Journal    
DOI: 10.1046/j.1365-2958.2003.03766.x     Document Type: Article
Times cited : (140)

References (49)
  • 1
    • 0037708992 scopus 로고    scopus 로고
    • Post-transcriptional control of gene expression: Effectors of mRNA decay
    • Arraiano, C.M., and Maquat, L.E. (2003) Post-transcriptional control of gene expression: effectors of mRNA decay. Mol Microbiol 49: 267-276.
    • (2003) Mol Microbiol , vol.49 , pp. 267-276
    • Arraiano, C.M.1    Maquat, L.E.2
  • 2
    • 0035176037 scopus 로고    scopus 로고
    • Cold-temperature induction of Escherichia coli polynucleotide phosphorylase occurs by reversal of its autoregulation
    • Beran, R.K., and Simons, R.W. (2001) Cold-temperature induction of Escherichia coli polynucleotide phosphorylase occurs by reversal of its autoregulation. Mol Microbiol 39: 112-125.
    • (2001) Mol Microbiol , vol.39 , pp. 112-125
    • Beran, R.K.1    Simons, R.W.2
  • 3
    • 0030051047 scopus 로고    scopus 로고
    • Post-transcriptional regulation of CspA expression in Escherichia coli
    • Brandi, A., Pietroni, P., Guarlerzi, C.O., and Pon, C.L. (1996) Post-transcriptional regulation of CspA expression in Escherichia coli. Mol Microbiol 19: 231-240.
    • (1996) Mol Microbiol , vol.19 , pp. 231-240
    • Brandi, A.1    Pietroni, P.2    Guarlerzi, C.O.3    Pon, C.L.4
  • 4
    • 0029948486 scopus 로고    scopus 로고
    • Temperature-dependence of open-complex formation at two Escherichia coli promoters with extended-10 sequences
    • Burns, H.D., Belyaeva, T.A., Busby, S.J., and Minchin, S.D. (1996) Temperature-dependence of open-complex formation at two Escherichia coli promoters with extended-10 sequences. Biochem J 317: 305-311.
    • (1996) Biochem J , vol.317 , pp. 305-311
    • Burns, H.D.1    Belyaeva, T.A.2    Busby, S.J.3    Minchin, S.D.4
  • 5
    • 0031471204 scopus 로고    scopus 로고
    • The solution structure of the S1 RNA binding domain: A member of an ancient nucleic acid-binding fold
    • Bycroft, M., Hubbard, T.J., Proctor, M., Freund, S.M., and Murzin, A.G. (1997) The solution structure of the S1 RNA binding domain: a member of an ancient nucleic acid-binding fold. Cell 88: 235-242.
    • (1997) Cell , vol.88 , pp. 235-242
    • Bycroft, M.1    Hubbard, T.J.2    Proctor, M.3    Freund, S.M.4    Murzin, A.G.5
  • 6
    • 0035064787 scopus 로고    scopus 로고
    • RNase II levels change according to the growth conditions: Characterization of gmr, a new Escherichia coli gene involved in the modulation of RNase II
    • Cairrão, F., Chora, A., Zilhão, R., Carpousis, A.J., and Arraiano, C.M. (2001) RNase II levels change according to the growth conditions: characterization of gmr, a new Escherichia coli gene involved in the modulation of RNase II. Mol Microbiol 39: 1550-1561.
    • (2001) Mol Microbiol , vol.39 , pp. 1550-1561
    • Cairrão, F.1    Chora, A.2    Zilhão, R.3    Carpousis, A.J.4    Arraiano, C.M.5
  • 7
    • 0024398325 scopus 로고
    • The gene for a small stable RNA (10Sa RNA) of Escherichia coli
    • Chauhan, A.K., and Apirion, D. (1989) The gene for a small stable RNA (10Sa RNA) of Escherichia coli. Mol Microbiol 11: 1481-1485.
    • (1989) Mol Microbiol , vol.11 , pp. 1481-1485
    • Chauhan, A.K.1    Apirion, D.2
  • 8
    • 0037077311 scopus 로고    scopus 로고
    • Purification and characterization of the Escherichia coli exoribonuclease RNase R. Comparison with RNase II
    • Cheng, Z.F., and Deutscher, M.P. (2002) Purification and characterization of the Escherichia coli exoribonuclease RNase R. Comparison with RNase II. J Biol Chem 277: 21624-21629.
    • (2002) J Biol Chem , vol.277 , pp. 21624-21629
    • Cheng, Z.F.1    Deutscher, M.P.2
  • 9
    • 0038652098 scopus 로고    scopus 로고
    • Quality control of ribosomal RNA mediated by polynucleotide phosphorylase and RNase R
    • Cheng, Z.F., and Deutscher, M.P. (2003) Quality control of ribosomal RNA mediated by polynucleotide phosphorylase and RNase R. Proc Natl Acad Sci USA 100: 6388-6393.
    • (2003) Proc Natl Acad Sci USA , vol.100 , pp. 6388-6393
    • Cheng, Z.F.1    Deutscher, M.P.2
  • 10
    • 0032486392 scopus 로고    scopus 로고
    • The vacB gene required for virulence in Shigella flexneri and Escherichia coli encodes the exoribonuclease RNase R
    • Cheng, Z.F., Zuo, Y., Li, Z., Rudd, K.E., and Deutscher, M.P. (1998) The vacB gene required for virulence in Shigella flexneri and Escherichia coli encodes the exoribonuclease RNase R. J Biol Chem 273: 14077-14080.
    • (1998) J Biol Chem , vol.273 , pp. 14077-14080
    • Cheng, Z.F.1    Zuo, Y.2    Li, Z.3    Rudd, K.E.4    Deutscher, M.P.5
  • 13
    • 0036231561 scopus 로고    scopus 로고
    • Selective expression of the β-subunit of nucleoid-associated protein HU during cold shock in Escherichia coli
    • Giangrossi, M., Giuliodori, A.M., Gualerzi, C.O., and Pon, C.L. (2002) Selective expression of the β-subunit of nucleoid-associated protein HU during cold shock in Escherichia coli. Mol Microbiol 44: 205-216.
    • (2002) Mol Microbiol , vol.44 , pp. 205-216
    • Giangrossi, M.1    Giuliodori, A.M.2    Gualerzi, C.O.3    Pon, C.L.4
  • 14
    • 0035171382 scopus 로고    scopus 로고
    • Emerging views on tmRNA mediated protein tagging and ribosome rescue
    • Gillet, R., and Felden, B. (2001) Emerging views on tmRNA mediated protein tagging and ribosome rescue. Mol Microbiol 42: 879-885.
    • (2001) Mol Microbiol , vol.42 , pp. 879-885
    • Gillet, R.1    Felden, B.2
  • 15
    • 0030033310 scopus 로고    scopus 로고
    • Differential mRNA stability of the cspA gene in the cold-shock response of Escherichia coli
    • Goldenberg, D., Azar, I., and Oppenheim, A.B. (1996) Differential mRNA stability of the cspA gene in the cold-shock response of Escherichia coli. Mol Microbiol 19: 241-248.
    • (1996) Mol Microbiol , vol.19 , pp. 241-248
    • Goldenberg, D.1    Azar, I.2    Oppenheim, A.B.3
  • 16
    • 0035807308 scopus 로고    scopus 로고
    • Quality control of mRNA 3′end processing is linked to the nuclear exosome
    • Hilleren, P., McCarthy, T., Rosbash, M., Parker, R., and Jensen, T.H. (2001) Quality control of mRNA 3′end processing is linked to the nuclear exosome. Nature 413:538-542.
    • (2001) Nature , vol.413 , pp. 538-542
    • Hilleren, P.1    McCarthy, T.2    Rosbash, M.3    Parker, R.4    Jensen, T.H.5
  • 17
    • 0031015217 scopus 로고    scopus 로고
    • CspA, the major cold-shock protein of Escherichia coli, is an RNA chaperone
    • Jiang, W., Hou, Y., and Inouye, M. (1997) CspA, the major cold-shock protein of Escherichia coli, is an RNA chaperone. J Biol Chem 272: 196-202.
    • (1997) J Biol Chem , vol.272 , pp. 196-202
    • Jiang, W.1    Hou, Y.2    Inouye, M.3
  • 18
    • 0023186464 scopus 로고
    • Induction of proteins in response to low temperature in Escherichia coli
    • Jones, P.G., Van Bogelen, R.A., and Neidhardt, F.C. (1987) Induction of proteins in response to low temperature in Escherichia coli. J Bacteriol 169: 2092-2095.
    • (1987) J Bacteriol , vol.169 , pp. 2092-2095
    • Jones, P.G.1    Van Bogelen, R.A.2    Neidhardt, F.C.3
  • 19
    • 0035853072 scopus 로고    scopus 로고
    • Protein factors associated with the SsrA/SmpB tagging and ribosome rescue complex
    • Karzai, A.W., and Sauer, R.T. (2001) Protein factors associated with the SsrA/SmpB tagging and ribosome rescue complex. Proc Natl Acad Sci USA 98: 3040-3044.
    • (2001) Proc Natl Acad Sci USA , vol.98 , pp. 3040-3044
    • Karzai, A.W.1    Sauer, R.T.2
  • 20
    • 0034046020 scopus 로고    scopus 로고
    • The SsrA-SmpB system for protein tagging, directed degradation and ribosome rescue
    • Karzai, A.W., Roche, E.D., and Sauer, R.T. (2000) The SsrA-SmpB system for protein tagging, directed degradation and ribosome rescue. Nat Struct Biol 7: 449-455.
    • (2000) Nat Struct Biol , vol.7 , pp. 449-455
    • Karzai, A.W.1    Roche, E.D.2    Sauer, R.T.3
  • 21
    • 0029910627 scopus 로고    scopus 로고
    • A protease complex in the Escherichia coli plasma membrane: HflKC HflA forms a complex with FtsH HfIB, regulating its proteolytic activity against SecY
    • Kihara, A., Akiyama, Y., and Ito, K. (1996) A protease complex in the Escherichia coli plasma membrane: HflKC HflA forms a complex with FtsH HfIB, regulating its proteolytic activity against SecY. EMBO J 15: 6122-6131.
    • (1996) EMBO J , vol.15 , pp. 6122-6131
    • Kihara, A.1    Akiyama, Y.2    Ito, K.3
  • 22
    • 0028124122 scopus 로고
    • A tRNA-like structure is present in 10Sa RNA, a small stable RNa from Escherichia coli
    • Komine, Y., Kitabatake, M., Yokogawa, T., Nishikawa, K., and Inokuchi, H. (1994) A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli. Proc Natl Acad Sci USA 91: 9223-9227.
    • (1994) Proc Natl Acad Sci USA , vol.91 , pp. 9223-9227
    • Komine, Y.1    Kitabatake, M.2    Yokogawa, T.3    Nishikawa, K.4    Inokuchi, H.5
  • 23
    • 0032539857 scopus 로고    scopus 로고
    • 3′ exoribonuclease trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli
    • Li, Z., Pandit, S., and Deutscher, M. (1998) 3′ exoribonuclease trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli. Proc Natl Acad Sci USA 95: 2856-2861.
    • (1998) Proc Natl Acad Sci USA , vol.95 , pp. 2856-2861
    • Li, Z.1    Pandit, S.2    Deutscher, M.3
  • 24
    • 0036500552 scopus 로고    scopus 로고
    • RNA quality control: Degradation of defective transfer RNA
    • Li, Z., Reimers, S., Pandit, S., and Deutscher, M. (2002) RNA quality control: degradation of defective transfer RNA. EMBO J 21: 1132-1138.
    • (2002) EMBO J , vol.21 , pp. 1132-1138
    • Li, Z.1    Reimers, S.2    Pandit, S.3    Deutscher, M.4
  • 25
    • 0033607239 scopus 로고    scopus 로고
    • RNase E is required for the maturation of ssrA RNA and normal ssrA RNA peptide-tagging activity
    • Lin-Chao, S., Wei, C., and Lin, Y. (1999) RNase E is required for the maturation of ssrA RNA and normal ssrA RNA peptide-tagging activity. Proc Natl Acad Sci USA 96: 12406-12411.
    • (1999) Proc Natl Acad Sci USA , vol.96 , pp. 12406-12411
    • Lin-Chao, S.1    Wei, C.2    Lin, Y.3
  • 26
    • 0035162971 scopus 로고    scopus 로고
    • The rlmB gene is essential for formation of Gm2251 in 23S rRNA but not for ribosome maturation in Escherichia coli
    • Lövgren, J.M., and Wikström, P.M. (2001) The rlmB gene is essential for formation of Gm2251 in 23S rRNA but not for ribosome maturation in Escherichia coli. J Bacteriol 183: 6957-6960.
    • (2001) J Bacteriol , vol.183 , pp. 6957-6960
    • Lövgren, J.M.1    Wikström, P.M.2
  • 27
    • 0034977180 scopus 로고    scopus 로고
    • Increased expression of Escherichia coli polynucleotide phosphorylase at low temperatures is linked to a decrease in the efficiency of autocontrol
    • Mathy, N., Jarrige, A.C., Robert-Le Meur, M., and Portier, C. (2001) Increased expression of Escherichia coli polynucleotide phosphorylase at low temperatures is linked to a decrease in the efficiency of autocontrol. J Bacteriol 183: 3848-3854.
    • (2001) J Bacteriol , vol.183 , pp. 3848-3854
    • Mathy, N.1    Jarrige, A.C.2    Robert-Le Meur, M.3    Portier, C.4
  • 28
    • 0030836805 scopus 로고    scopus 로고
    • Comparative sequence analysis of ribonucleases HII III, II, PH and D
    • Mian, I.S. (1997) Comparative sequence analysis of ribonucleases HII III, II, PH and D. Nucleic Acids Res 25: 3187-3195.
    • (1997) Nucleic Acids Res , vol.25 , pp. 3187-3195
    • Mian, I.S.1
  • 29
    • 0030702085 scopus 로고    scopus 로고
    • The exosome: A conserved eukaryotic RNA processing complex containing multiple 3′->5′ exoribonucleases
    • Mitchell, P., Petfalski, S., Shevchenko, A., Mann, M., and Tollervey, D. (1997) The exosome: a conserved eukaryotic RNA processing complex containing multiple 3′->5′ exoribonucleases. Cell 91: 457-466.
    • (1997) Cell , vol.91 , pp. 457-466
    • Mitchell, P.1    Petfalski, S.2    Shevchenko, A.3    Mann, M.4    Tollervey, D.5
  • 30
    • 0036510774 scopus 로고    scopus 로고
    • The nucleic acid melting activity of Escherichia coli CspE is critical for transcription antitermination and cold acclimation of cells
    • Phadtare, S., Inouye, M., and Severinov, K. (2002) The nucleic acid melting activity of Escherichia coli CspE is critical for transcription antitermination and cold acclimation of cells. J Biol Chem 277: 7239-7245.
    • (2002) J Biol Chem , vol.277 , pp. 7239-7245
    • Phadtare, S.1    Inouye, M.2    Severinov, K.3
  • 32
    • 0242400018 scopus 로고    scopus 로고
    • Degradation of mRNA in bacteria: Emergence of ubiquitous features
    • Régnier, P., and Arraiano, C.M. (2000) Degradation of mRNA in bacteria: emergence of ubiquitous features. Bioessays 22: 235-244.
    • (2000) Bioessays , vol.22 , pp. 235-244
    • Régnier, P.1    Arraiano, C.M.2
  • 34
    • 0022740187 scopus 로고
    • Direction of travel of RecBC recombinase through bacteriophage lambda DNA
    • Stahl, F.W., Kobayashi, I., Thaler, D., and Stahl, M.M. (1986) Direction of travel of RecBC recombinase through bacteriophage lambda DNA. Genetics 113: 215-227.
    • (1986) Genetics , vol.113 , pp. 215-227
    • Stahl, F.W.1    Kobayashi, I.2    Thaler, D.3    Stahl, M.M.4
  • 35
    • 0037123632 scopus 로고    scopus 로고
    • An expanding universe of noncoding RNAs
    • Storz, G. (2002) An expanding universe of noncoding RNAs. Science 296: 1260-1262.
    • (2002) Science , vol.296 , pp. 1260-1262
    • Storz, G.1
  • 37
    • 0026688006 scopus 로고
    • vacB, a novel chromosomal gene required for expression of virulence genes on the large plasmid of Shigella flexneri
    • Tobe, T., Sasakawa, C., Okada, N., Honma, Y., and Yoshikawa, M. (1992) vacB, a novel chromosomal gene required for expression of virulence genes on the large plasmid of Shigella flexneri. J Bacteriol 174: 6359-6367.
    • (1992) J Bacteriol , vol.174 , pp. 6359-6367
    • Tobe, T.1    Sasakawa, C.2    Okada, N.3    Honma, Y.4    Yoshikawa, M.5
  • 38
    • 0035983990 scopus 로고    scopus 로고
    • Processing of 3′-extended read-through transcripts by the exosome can generate functional mRNAs
    • Torchet, C., Bousquet-Antonelli, C., Milligan, L., Thompson, E., Kufel, J., and Tollervey, D. (2002) Processing of 3′-extended read-through transcripts by the exosome can generate functional mRNAs. Mol Cell 9: 1285-1296.
    • (2002) Mol Cell , vol.9 , pp. 1285-1296
    • Torchet, C.1    Bousquet-Antonelli, C.2    Milligan, L.3    Thompson, E.4    Kufel, J.5    Tollervey, D.6
  • 39
    • 0031596380 scopus 로고    scopus 로고
    • Survival of enterohaemorrhagic E. coli 0157:H7 in water
    • Wang, G., and Doyle, M.P. (1998) Survival of enterohaemorrhagic E. coli 0157:H7 in water. J Food Prot 61: 662-667.
    • (1998) J Food Prot , vol.61 , pp. 662-667
    • Wang, G.1    Doyle, M.P.2
  • 40
    • 0036081377 scopus 로고    scopus 로고
    • CSDBase: An interactive database for cold shock domain-containing proteins and the bacterial cold shock response
    • Weber, M.H., Fricke, I., Doll, N., and Marahiel, M.A. (2002) CSDBase: an interactive database for cold shock domain-containing proteins and the bacterial cold shock response. Nucleic Acids Res 30: 375-378.
    • (2002) Nucleic Acids Res , vol.30 , pp. 375-378
    • Weber, M.H.1    Fricke, I.2    Doll, N.3    Marahiel, M.A.4
  • 41
    • 0036221089 scopus 로고    scopus 로고
    • The biological roles of trans-translation
    • Withey, J.H., and Friedman, D.I. (2002) The biological roles of trans-translation. Curr Opin Microbiol 5: 154-159.
    • (2002) Curr Opin Microbiol , vol.5 , pp. 154-159
    • Withey, J.H.1    Friedman, D.I.2
  • 42
    • 0242523959 scopus 로고    scopus 로고
    • A salvage pathway for protein synthesis: TmRNA and trans-translation
    • in press
    • Withey, J.H., and Friedman, D.I. (2003) A salvage pathway for protein synthesis: tmRNA and trans-translation. Annu Rev Microbiol 57: in press.
    • (2003) Annu Rev Microbiol , vol.57
    • Withey, J.H.1    Friedman, D.I.2
  • 43
    • 0033222326 scopus 로고    scopus 로고
    • Cold shock response in Escherichia coli
    • Yamanaka, K. (1999) Cold shock response in Escherichia coli. J Mol Microbiol Biotechnol 1: 193-202.
    • (1999) J Mol Microbiol Biotechnol , vol.1 , pp. 193-202
    • Yamanaka, K.1
  • 44
    • 0035046480 scopus 로고    scopus 로고
    • Selective mRNA degradation by polynucleotide phosphorylase in cold shock adaptation in Escherichia coli
    • Yamanaka, K., and Inouye, M. (2001) Selective mRNA degradation by polynucleotide phosphorylase in cold shock adaptation in Escherichia coli. J Bacteriol 183: 2808-2816.
    • (2001) J Bacteriol , vol.183 , pp. 2808-2816
    • Yamanaka, K.1    Inouye, M.2
  • 45
    • 0033923957 scopus 로고    scopus 로고
    • Transcriptional and post-transcriptional control of polynucleotide phosphorylase during cold acclimation in Escherichia coli
    • Zangrossi, S., Briani, F., Ghisotti, D., Regonesi, M.E., Totora, P., and Deho, G. (2000) Transcriptional and post-transcriptional control of polynucleotide phosphorylase during cold acclimation in Escherichia coli. Mol Microbiol 36: 1470-1480.
    • (2000) Mol Microbiol , vol.36 , pp. 1470-1480
    • Zangrossi, S.1    Briani, F.2    Ghisotti, D.3    Regonesi, M.E.4    Totora, P.5    Deho, G.6
  • 46
    • 0029151710 scopus 로고
    • The role of endonucleases in the expression of ribonuclease II in Escherichia coli
    • Zilhão, R., Régnier, P., and Arraiano, C.M. (1995) The role of endonucleases in the expression of ribonuclease II in Escherichia coli. FEMS Microbiol Lett 130: 237-244.
    • (1995) FEMS Microbiol Lett , vol.130 , pp. 237-244
    • Zilhão, R.1    Régnier, P.2    Arraiano, C.M.3
  • 47
    • 0030007719 scopus 로고    scopus 로고
    • PNPase modulates RNase II expression in Escherichia coli: Implications for mRNA decay and cell metabolism
    • Zilhão, R., Cairrão, F., Régnier, P., and Arraiano, C.M. (1996a) PNPase modulates RNase II expression in Escherichia coli: implications for mRNA decay and cell metabolism. Mol Microbiol 20: 1033-1042.
    • (1996) Mol Microbiol , vol.20 , pp. 1033-1042
    • Zilhão, R.1    Cairrão, F.2    Régnier, P.3    Arraiano, C.M.4
  • 48
    • 0030021422 scopus 로고    scopus 로고
    • Escherichia coli RNase II: Characterization of the promoters involved in the transcription of Rnb
    • Zilhão, R., Plumbridge, J., Hajnsdorf, E., Régnier, P., and Arraiano, C.M. (1996b) Escherichia coli RNase II: characterization of the promoters involved in the transcription of Rnb. Microbiol 142: 367-375.
    • (1996) Microbiol , vol.142 , pp. 367-375
    • Zilhão, R.1    Plumbridge, J.2    Hajnsdorf, E.3    Régnier, P.4    Arraiano, C.M.5
  • 49
    • 0035283033 scopus 로고    scopus 로고
    • Exoribonuclease superfamilies: Structural analysis and phylogenetic distribution
    • Zuo, Y., and Deutscher, M.P. (2001) Exoribonuclease superfamilies: structural analysis and phylogenetic distribution. Nucleic Acids Res 29: 1017-1026.
    • (2001) Nucleic Acids Res , vol.29 , pp. 1017-1026
    • Zuo, Y.1    Deutscher, M.P.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.