-
1
-
-
0037708992
-
Post-transcriptional control of gene expression: Effectors of mRNA decay
-
Arraiano, C.M., and Maquat, L.E. (2003) Post-transcriptional control of gene expression: effectors of mRNA decay. Mol Microbiol 49: 267-276.
-
(2003)
Mol Microbiol
, vol.49
, pp. 267-276
-
-
Arraiano, C.M.1
Maquat, L.E.2
-
2
-
-
0035176037
-
Cold-temperature induction of Escherichia coli polynucleotide phosphorylase occurs by reversal of its autoregulation
-
Beran, R.K., and Simons, R.W. (2001) Cold-temperature induction of Escherichia coli polynucleotide phosphorylase occurs by reversal of its autoregulation. Mol Microbiol 39: 112-125.
-
(2001)
Mol Microbiol
, vol.39
, pp. 112-125
-
-
Beran, R.K.1
Simons, R.W.2
-
3
-
-
0030051047
-
Post-transcriptional regulation of CspA expression in Escherichia coli
-
Brandi, A., Pietroni, P., Guarlerzi, C.O., and Pon, C.L. (1996) Post-transcriptional regulation of CspA expression in Escherichia coli. Mol Microbiol 19: 231-240.
-
(1996)
Mol Microbiol
, vol.19
, pp. 231-240
-
-
Brandi, A.1
Pietroni, P.2
Guarlerzi, C.O.3
Pon, C.L.4
-
4
-
-
0029948486
-
Temperature-dependence of open-complex formation at two Escherichia coli promoters with extended-10 sequences
-
Burns, H.D., Belyaeva, T.A., Busby, S.J., and Minchin, S.D. (1996) Temperature-dependence of open-complex formation at two Escherichia coli promoters with extended-10 sequences. Biochem J 317: 305-311.
-
(1996)
Biochem J
, vol.317
, pp. 305-311
-
-
Burns, H.D.1
Belyaeva, T.A.2
Busby, S.J.3
Minchin, S.D.4
-
5
-
-
0031471204
-
The solution structure of the S1 RNA binding domain: A member of an ancient nucleic acid-binding fold
-
Bycroft, M., Hubbard, T.J., Proctor, M., Freund, S.M., and Murzin, A.G. (1997) The solution structure of the S1 RNA binding domain: a member of an ancient nucleic acid-binding fold. Cell 88: 235-242.
-
(1997)
Cell
, vol.88
, pp. 235-242
-
-
Bycroft, M.1
Hubbard, T.J.2
Proctor, M.3
Freund, S.M.4
Murzin, A.G.5
-
6
-
-
0035064787
-
RNase II levels change according to the growth conditions: Characterization of gmr, a new Escherichia coli gene involved in the modulation of RNase II
-
Cairrão, F., Chora, A., Zilhão, R., Carpousis, A.J., and Arraiano, C.M. (2001) RNase II levels change according to the growth conditions: characterization of gmr, a new Escherichia coli gene involved in the modulation of RNase II. Mol Microbiol 39: 1550-1561.
-
(2001)
Mol Microbiol
, vol.39
, pp. 1550-1561
-
-
Cairrão, F.1
Chora, A.2
Zilhão, R.3
Carpousis, A.J.4
Arraiano, C.M.5
-
7
-
-
0024398325
-
The gene for a small stable RNA (10Sa RNA) of Escherichia coli
-
Chauhan, A.K., and Apirion, D. (1989) The gene for a small stable RNA (10Sa RNA) of Escherichia coli. Mol Microbiol 11: 1481-1485.
-
(1989)
Mol Microbiol
, vol.11
, pp. 1481-1485
-
-
Chauhan, A.K.1
Apirion, D.2
-
8
-
-
0037077311
-
Purification and characterization of the Escherichia coli exoribonuclease RNase R. Comparison with RNase II
-
Cheng, Z.F., and Deutscher, M.P. (2002) Purification and characterization of the Escherichia coli exoribonuclease RNase R. Comparison with RNase II. J Biol Chem 277: 21624-21629.
-
(2002)
J Biol Chem
, vol.277
, pp. 21624-21629
-
-
Cheng, Z.F.1
Deutscher, M.P.2
-
9
-
-
0038652098
-
Quality control of ribosomal RNA mediated by polynucleotide phosphorylase and RNase R
-
Cheng, Z.F., and Deutscher, M.P. (2003) Quality control of ribosomal RNA mediated by polynucleotide phosphorylase and RNase R. Proc Natl Acad Sci USA 100: 6388-6393.
-
(2003)
Proc Natl Acad Sci USA
, vol.100
, pp. 6388-6393
-
-
Cheng, Z.F.1
Deutscher, M.P.2
-
10
-
-
0032486392
-
The vacB gene required for virulence in Shigella flexneri and Escherichia coli encodes the exoribonuclease RNase R
-
Cheng, Z.F., Zuo, Y., Li, Z., Rudd, K.E., and Deutscher, M.P. (1998) The vacB gene required for virulence in Shigella flexneri and Escherichia coli encodes the exoribonuclease RNase R. J Biol Chem 273: 14077-14080.
-
(1998)
J Biol Chem
, vol.273
, pp. 14077-14080
-
-
Cheng, Z.F.1
Zuo, Y.2
Li, Z.3
Rudd, K.E.4
Deutscher, M.P.5
-
11
-
-
0037172995
-
Polynucleotide phosphorylase is a global regulator of virulence and persistency in Salmonella enterica
-
Clements, M.O., Eriksson, S., Thompson, A., Lucchini, S., Hinton, J.C.D., Normark, S., and Rhen, M. (2002) Polynucleotide phosphorylase is a global regulator of virulence and persistency in Salmonella enterica. Proc Natl Acad Sci USA 99: 8784-8789.
-
(2002)
Proc Natl Acad Sci USA
, vol.99
, pp. 8784-8789
-
-
Clements, M.O.1
Eriksson, S.2
Thompson, A.3
Lucchini, S.4
Hinton, J.C.D.5
Normark, S.6
Rhen, M.7
-
12
-
-
0037193983
-
Low-temperature sensors in bacteria
-
Eriksson, S., Hurme, R., and Rhen, M. (2002) Low-temperature sensors in bacteria. Philos Trans R Soc Lond B Biol Sci 357: 887-893.
-
(2002)
Philos Trans R Soc Lond B Biol Sci
, vol.357
, pp. 887-893
-
-
Eriksson, S.1
Hurme, R.2
Rhen, M.3
-
13
-
-
0036231561
-
Selective expression of the β-subunit of nucleoid-associated protein HU during cold shock in Escherichia coli
-
Giangrossi, M., Giuliodori, A.M., Gualerzi, C.O., and Pon, C.L. (2002) Selective expression of the β-subunit of nucleoid-associated protein HU during cold shock in Escherichia coli. Mol Microbiol 44: 205-216.
-
(2002)
Mol Microbiol
, vol.44
, pp. 205-216
-
-
Giangrossi, M.1
Giuliodori, A.M.2
Gualerzi, C.O.3
Pon, C.L.4
-
14
-
-
0035171382
-
Emerging views on tmRNA mediated protein tagging and ribosome rescue
-
Gillet, R., and Felden, B. (2001) Emerging views on tmRNA mediated protein tagging and ribosome rescue. Mol Microbiol 42: 879-885.
-
(2001)
Mol Microbiol
, vol.42
, pp. 879-885
-
-
Gillet, R.1
Felden, B.2
-
15
-
-
0030033310
-
Differential mRNA stability of the cspA gene in the cold-shock response of Escherichia coli
-
Goldenberg, D., Azar, I., and Oppenheim, A.B. (1996) Differential mRNA stability of the cspA gene in the cold-shock response of Escherichia coli. Mol Microbiol 19: 241-248.
-
(1996)
Mol Microbiol
, vol.19
, pp. 241-248
-
-
Goldenberg, D.1
Azar, I.2
Oppenheim, A.B.3
-
16
-
-
0035807308
-
Quality control of mRNA 3′end processing is linked to the nuclear exosome
-
Hilleren, P., McCarthy, T., Rosbash, M., Parker, R., and Jensen, T.H. (2001) Quality control of mRNA 3′end processing is linked to the nuclear exosome. Nature 413:538-542.
-
(2001)
Nature
, vol.413
, pp. 538-542
-
-
Hilleren, P.1
McCarthy, T.2
Rosbash, M.3
Parker, R.4
Jensen, T.H.5
-
17
-
-
0031015217
-
CspA, the major cold-shock protein of Escherichia coli, is an RNA chaperone
-
Jiang, W., Hou, Y., and Inouye, M. (1997) CspA, the major cold-shock protein of Escherichia coli, is an RNA chaperone. J Biol Chem 272: 196-202.
-
(1997)
J Biol Chem
, vol.272
, pp. 196-202
-
-
Jiang, W.1
Hou, Y.2
Inouye, M.3
-
18
-
-
0023186464
-
Induction of proteins in response to low temperature in Escherichia coli
-
Jones, P.G., Van Bogelen, R.A., and Neidhardt, F.C. (1987) Induction of proteins in response to low temperature in Escherichia coli. J Bacteriol 169: 2092-2095.
-
(1987)
J Bacteriol
, vol.169
, pp. 2092-2095
-
-
Jones, P.G.1
Van Bogelen, R.A.2
Neidhardt, F.C.3
-
19
-
-
0035853072
-
Protein factors associated with the SsrA/SmpB tagging and ribosome rescue complex
-
Karzai, A.W., and Sauer, R.T. (2001) Protein factors associated with the SsrA/SmpB tagging and ribosome rescue complex. Proc Natl Acad Sci USA 98: 3040-3044.
-
(2001)
Proc Natl Acad Sci USA
, vol.98
, pp. 3040-3044
-
-
Karzai, A.W.1
Sauer, R.T.2
-
20
-
-
0034046020
-
The SsrA-SmpB system for protein tagging, directed degradation and ribosome rescue
-
Karzai, A.W., Roche, E.D., and Sauer, R.T. (2000) The SsrA-SmpB system for protein tagging, directed degradation and ribosome rescue. Nat Struct Biol 7: 449-455.
-
(2000)
Nat Struct Biol
, vol.7
, pp. 449-455
-
-
Karzai, A.W.1
Roche, E.D.2
Sauer, R.T.3
-
21
-
-
0029910627
-
A protease complex in the Escherichia coli plasma membrane: HflKC HflA forms a complex with FtsH HfIB, regulating its proteolytic activity against SecY
-
Kihara, A., Akiyama, Y., and Ito, K. (1996) A protease complex in the Escherichia coli plasma membrane: HflKC HflA forms a complex with FtsH HfIB, regulating its proteolytic activity against SecY. EMBO J 15: 6122-6131.
-
(1996)
EMBO J
, vol.15
, pp. 6122-6131
-
-
Kihara, A.1
Akiyama, Y.2
Ito, K.3
-
22
-
-
0028124122
-
A tRNA-like structure is present in 10Sa RNA, a small stable RNa from Escherichia coli
-
Komine, Y., Kitabatake, M., Yokogawa, T., Nishikawa, K., and Inokuchi, H. (1994) A tRNA-like structure is present in 10Sa RNA, a small stable RNA from Escherichia coli. Proc Natl Acad Sci USA 91: 9223-9227.
-
(1994)
Proc Natl Acad Sci USA
, vol.91
, pp. 9223-9227
-
-
Komine, Y.1
Kitabatake, M.2
Yokogawa, T.3
Nishikawa, K.4
Inokuchi, H.5
-
23
-
-
0032539857
-
3′ exoribonuclease trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli
-
Li, Z., Pandit, S., and Deutscher, M. (1998) 3′ exoribonuclease trimming is a common feature of the maturation of small, stable RNAs in Escherichia coli. Proc Natl Acad Sci USA 95: 2856-2861.
-
(1998)
Proc Natl Acad Sci USA
, vol.95
, pp. 2856-2861
-
-
Li, Z.1
Pandit, S.2
Deutscher, M.3
-
24
-
-
0036500552
-
RNA quality control: Degradation of defective transfer RNA
-
Li, Z., Reimers, S., Pandit, S., and Deutscher, M. (2002) RNA quality control: degradation of defective transfer RNA. EMBO J 21: 1132-1138.
-
(2002)
EMBO J
, vol.21
, pp. 1132-1138
-
-
Li, Z.1
Reimers, S.2
Pandit, S.3
Deutscher, M.4
-
25
-
-
0033607239
-
RNase E is required for the maturation of ssrA RNA and normal ssrA RNA peptide-tagging activity
-
Lin-Chao, S., Wei, C., and Lin, Y. (1999) RNase E is required for the maturation of ssrA RNA and normal ssrA RNA peptide-tagging activity. Proc Natl Acad Sci USA 96: 12406-12411.
-
(1999)
Proc Natl Acad Sci USA
, vol.96
, pp. 12406-12411
-
-
Lin-Chao, S.1
Wei, C.2
Lin, Y.3
-
26
-
-
0035162971
-
The rlmB gene is essential for formation of Gm2251 in 23S rRNA but not for ribosome maturation in Escherichia coli
-
Lövgren, J.M., and Wikström, P.M. (2001) The rlmB gene is essential for formation of Gm2251 in 23S rRNA but not for ribosome maturation in Escherichia coli. J Bacteriol 183: 6957-6960.
-
(2001)
J Bacteriol
, vol.183
, pp. 6957-6960
-
-
Lövgren, J.M.1
Wikström, P.M.2
-
27
-
-
0034977180
-
Increased expression of Escherichia coli polynucleotide phosphorylase at low temperatures is linked to a decrease in the efficiency of autocontrol
-
Mathy, N., Jarrige, A.C., Robert-Le Meur, M., and Portier, C. (2001) Increased expression of Escherichia coli polynucleotide phosphorylase at low temperatures is linked to a decrease in the efficiency of autocontrol. J Bacteriol 183: 3848-3854.
-
(2001)
J Bacteriol
, vol.183
, pp. 3848-3854
-
-
Mathy, N.1
Jarrige, A.C.2
Robert-Le Meur, M.3
Portier, C.4
-
28
-
-
0030836805
-
Comparative sequence analysis of ribonucleases HII III, II, PH and D
-
Mian, I.S. (1997) Comparative sequence analysis of ribonucleases HII III, II, PH and D. Nucleic Acids Res 25: 3187-3195.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 3187-3195
-
-
Mian, I.S.1
-
29
-
-
0030702085
-
The exosome: A conserved eukaryotic RNA processing complex containing multiple 3′->5′ exoribonucleases
-
Mitchell, P., Petfalski, S., Shevchenko, A., Mann, M., and Tollervey, D. (1997) The exosome: a conserved eukaryotic RNA processing complex containing multiple 3′->5′ exoribonucleases. Cell 91: 457-466.
-
(1997)
Cell
, vol.91
, pp. 457-466
-
-
Mitchell, P.1
Petfalski, S.2
Shevchenko, A.3
Mann, M.4
Tollervey, D.5
-
30
-
-
0036510774
-
The nucleic acid melting activity of Escherichia coli CspE is critical for transcription antitermination and cold acclimation of cells
-
Phadtare, S., Inouye, M., and Severinov, K. (2002) The nucleic acid melting activity of Escherichia coli CspE is critical for transcription antitermination and cold acclimation of cells. J Biol Chem 277: 7239-7245.
-
(2002)
J Biol Chem
, vol.277
, pp. 7239-7245
-
-
Phadtare, S.1
Inouye, M.2
Severinov, K.3
-
31
-
-
0141532929
-
Changes in the Escherichia coli transcriptome during acclimation at low temperature
-
in press
-
Polissi, A., De Laurentis, W., Zangrossi, S., Briani, F., Longhi, V., Pesole, G., and Dehò, G. (2003) Changes in the Escherichia coli transcriptome during acclimation at low temperature. Res Microbiol (in press).
-
(2003)
Res Microbiol
-
-
Polissi, A.1
De Laurentis, W.2
Zangrossi, S.3
Briani, F.4
Longhi, V.5
Pesole, G.6
Dehò, G.7
-
32
-
-
0242400018
-
Degradation of mRNA in bacteria: Emergence of ubiquitous features
-
Régnier, P., and Arraiano, C.M. (2000) Degradation of mRNA in bacteria: emergence of ubiquitous features. Bioessays 22: 235-244.
-
(2000)
Bioessays
, vol.22
, pp. 235-244
-
-
Régnier, P.1
Arraiano, C.M.2
-
33
-
-
0004136246
-
-
Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press
-
Sambrook, J., Fritsch, E.F., and Maniatis, T. (1986) Molecular Cloning: a Laboratory Manual, 2nd edn. Cold Spring Harbor, New York: Cold Spring Harbor Laboratory Press.
-
(1986)
Molecular Cloning: A Laboratory Manual, 2nd Edn.
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
34
-
-
0022740187
-
Direction of travel of RecBC recombinase through bacteriophage lambda DNA
-
Stahl, F.W., Kobayashi, I., Thaler, D., and Stahl, M.M. (1986) Direction of travel of RecBC recombinase through bacteriophage lambda DNA. Genetics 113: 215-227.
-
(1986)
Genetics
, vol.113
, pp. 215-227
-
-
Stahl, F.W.1
Kobayashi, I.2
Thaler, D.3
Stahl, M.M.4
-
35
-
-
0037123632
-
An expanding universe of noncoding RNAs
-
Storz, G. (2002) An expanding universe of noncoding RNAs. Science 296: 1260-1262.
-
(2002)
Science
, vol.296
, pp. 1260-1262
-
-
Storz, G.1
-
36
-
-
0031936007
-
Cold shock and adaptation
-
Thieringer, H.A., Jones, P.G., and Inouye, M. (1998) Cold shock and adaptation. Bioessays 20: 49-57.
-
(1998)
Bioessays
, vol.20
, pp. 49-57
-
-
Thieringer, H.A.1
Jones, P.G.2
Inouye, M.3
-
37
-
-
0026688006
-
vacB, a novel chromosomal gene required for expression of virulence genes on the large plasmid of Shigella flexneri
-
Tobe, T., Sasakawa, C., Okada, N., Honma, Y., and Yoshikawa, M. (1992) vacB, a novel chromosomal gene required for expression of virulence genes on the large plasmid of Shigella flexneri. J Bacteriol 174: 6359-6367.
-
(1992)
J Bacteriol
, vol.174
, pp. 6359-6367
-
-
Tobe, T.1
Sasakawa, C.2
Okada, N.3
Honma, Y.4
Yoshikawa, M.5
-
38
-
-
0035983990
-
Processing of 3′-extended read-through transcripts by the exosome can generate functional mRNAs
-
Torchet, C., Bousquet-Antonelli, C., Milligan, L., Thompson, E., Kufel, J., and Tollervey, D. (2002) Processing of 3′-extended read-through transcripts by the exosome can generate functional mRNAs. Mol Cell 9: 1285-1296.
-
(2002)
Mol Cell
, vol.9
, pp. 1285-1296
-
-
Torchet, C.1
Bousquet-Antonelli, C.2
Milligan, L.3
Thompson, E.4
Kufel, J.5
Tollervey, D.6
-
39
-
-
0031596380
-
Survival of enterohaemorrhagic E. coli 0157:H7 in water
-
Wang, G., and Doyle, M.P. (1998) Survival of enterohaemorrhagic E. coli 0157:H7 in water. J Food Prot 61: 662-667.
-
(1998)
J Food Prot
, vol.61
, pp. 662-667
-
-
Wang, G.1
Doyle, M.P.2
-
40
-
-
0036081377
-
CSDBase: An interactive database for cold shock domain-containing proteins and the bacterial cold shock response
-
Weber, M.H., Fricke, I., Doll, N., and Marahiel, M.A. (2002) CSDBase: an interactive database for cold shock domain-containing proteins and the bacterial cold shock response. Nucleic Acids Res 30: 375-378.
-
(2002)
Nucleic Acids Res
, vol.30
, pp. 375-378
-
-
Weber, M.H.1
Fricke, I.2
Doll, N.3
Marahiel, M.A.4
-
41
-
-
0036221089
-
The biological roles of trans-translation
-
Withey, J.H., and Friedman, D.I. (2002) The biological roles of trans-translation. Curr Opin Microbiol 5: 154-159.
-
(2002)
Curr Opin Microbiol
, vol.5
, pp. 154-159
-
-
Withey, J.H.1
Friedman, D.I.2
-
42
-
-
0242523959
-
A salvage pathway for protein synthesis: TmRNA and trans-translation
-
in press
-
Withey, J.H., and Friedman, D.I. (2003) A salvage pathway for protein synthesis: tmRNA and trans-translation. Annu Rev Microbiol 57: in press.
-
(2003)
Annu Rev Microbiol
, vol.57
-
-
Withey, J.H.1
Friedman, D.I.2
-
43
-
-
0033222326
-
Cold shock response in Escherichia coli
-
Yamanaka, K. (1999) Cold shock response in Escherichia coli. J Mol Microbiol Biotechnol 1: 193-202.
-
(1999)
J Mol Microbiol Biotechnol
, vol.1
, pp. 193-202
-
-
Yamanaka, K.1
-
44
-
-
0035046480
-
Selective mRNA degradation by polynucleotide phosphorylase in cold shock adaptation in Escherichia coli
-
Yamanaka, K., and Inouye, M. (2001) Selective mRNA degradation by polynucleotide phosphorylase in cold shock adaptation in Escherichia coli. J Bacteriol 183: 2808-2816.
-
(2001)
J Bacteriol
, vol.183
, pp. 2808-2816
-
-
Yamanaka, K.1
Inouye, M.2
-
45
-
-
0033923957
-
Transcriptional and post-transcriptional control of polynucleotide phosphorylase during cold acclimation in Escherichia coli
-
Zangrossi, S., Briani, F., Ghisotti, D., Regonesi, M.E., Totora, P., and Deho, G. (2000) Transcriptional and post-transcriptional control of polynucleotide phosphorylase during cold acclimation in Escherichia coli. Mol Microbiol 36: 1470-1480.
-
(2000)
Mol Microbiol
, vol.36
, pp. 1470-1480
-
-
Zangrossi, S.1
Briani, F.2
Ghisotti, D.3
Regonesi, M.E.4
Totora, P.5
Deho, G.6
-
46
-
-
0029151710
-
The role of endonucleases in the expression of ribonuclease II in Escherichia coli
-
Zilhão, R., Régnier, P., and Arraiano, C.M. (1995) The role of endonucleases in the expression of ribonuclease II in Escherichia coli. FEMS Microbiol Lett 130: 237-244.
-
(1995)
FEMS Microbiol Lett
, vol.130
, pp. 237-244
-
-
Zilhão, R.1
Régnier, P.2
Arraiano, C.M.3
-
47
-
-
0030007719
-
PNPase modulates RNase II expression in Escherichia coli: Implications for mRNA decay and cell metabolism
-
Zilhão, R., Cairrão, F., Régnier, P., and Arraiano, C.M. (1996a) PNPase modulates RNase II expression in Escherichia coli: implications for mRNA decay and cell metabolism. Mol Microbiol 20: 1033-1042.
-
(1996)
Mol Microbiol
, vol.20
, pp. 1033-1042
-
-
Zilhão, R.1
Cairrão, F.2
Régnier, P.3
Arraiano, C.M.4
-
48
-
-
0030021422
-
Escherichia coli RNase II: Characterization of the promoters involved in the transcription of Rnb
-
Zilhão, R., Plumbridge, J., Hajnsdorf, E., Régnier, P., and Arraiano, C.M. (1996b) Escherichia coli RNase II: characterization of the promoters involved in the transcription of Rnb. Microbiol 142: 367-375.
-
(1996)
Microbiol
, vol.142
, pp. 367-375
-
-
Zilhão, R.1
Plumbridge, J.2
Hajnsdorf, E.3
Régnier, P.4
Arraiano, C.M.5
-
49
-
-
0035283033
-
Exoribonuclease superfamilies: Structural analysis and phylogenetic distribution
-
Zuo, Y., and Deutscher, M.P. (2001) Exoribonuclease superfamilies: structural analysis and phylogenetic distribution. Nucleic Acids Res 29: 1017-1026.
-
(2001)
Nucleic Acids Res
, vol.29
, pp. 1017-1026
-
-
Zuo, Y.1
Deutscher, M.P.2
|