Tree immunity: Growing old without antibodies

Trends in Plant Science

Volumn 19, Issue 6, 2014, Pages 367-370

  Tobias, Peri A ^a   Guest, David I ^a  

^a UNIVERSITY OF SYDNEY   (Australia)

Author keywords

Gene clusters; Mutations; R genes; Transposable elements

Indexed keywords

VEGETABLE PROTEIN;

GENE DOSAGE; GENETICS; IMMUNOLOGY; METABOLISM; MICROBIOLOGY; MUTATION; PHYSIOLOGY; PLANT GENOME; TREE;

GENE DOSAGE; GENOME, PLANT; MUTATION; PLANT PROTEINS; TREES;

EID: 84901624130     PISSN: 13601385     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.tplants.2014.01.011     Document Type: Review

References (56)

1. Van de Wouw A.P., et al. Evolution of linked avirulence effectors in Leptosphaeria maculans is affected by genomic environment and exposure to resistance genes in host plants. PLoS Pathog. 2010, 6:e1001180.
2. Singh R.P., et al. The emergence of Ug99 races of the stem rust fungus is a threat to world wheat production. Annu. Rev. Phytopathol. 2011, 49:465-481.
3. Martin M.D., et al. Reconstructing genome evolution in historic samples of the Irish potato famine pathogen. Nat. Commun. 2013, 4:2172.
4. Shigo A. Compartmentalization: a conceptual framework for understanding how trees grow and defend themselves. Annu. Rev. Phytopathol. 1984, 22:189-214.
5. Estornell L.H., et al. Elucidating mechanisms underlying organ abscission. Plant Sci. 2013, 199:48-60.
6. Miyashima S., et al. Stem cell function during plant vascular development. EMBO J. 2013, 32:178-193.
7. Veloso J., et al. New bricks on the wall of induced resistance: salicylic acid receptors and transgenerational priming. Eur. J. Plant Pathol. 2013, 2013:1-9.
8. Ellis J.G., Jones D.A. Plant disease resistance genes. Infectious Disease: Innate Immunity 1998, 27-45. Humana Press. R.A. Ezekowitz, J.A. Hoffman (Eds.).
9. Tiffin P., Moeller D.A. Molecular evolution of plant immune system genes. Trends Genet. 2006, 22:662-670.
10. Michelmore R.W., Meyers B.C. Clusters of resistance genes in plants evolve by divergent selection and a birth-and-death process. Genome Res. 1998, 8:1113-1130.
11. Hörger A.C., et al. Balancing selection at the tomato RCR3 guardee gene family maintains variation in strength of pathogen defense. PLoS Genet. 2012, 8:e1002813.
12. Kaschani F., et al. An effector-targeted protease contributes to defense against Phytophthora infestans and is under diversifying selection in natural hosts. Plant Physiol. 2010, 154:1794-1804.
13. Bishop J.G., et al. Rapid evolution in plant chitinases: molecular targets of selection in plant-pathogen coevolution. Proc. Natl. Acad. Sci. U.S.A. 2000, 97:5322-5327.
14. Tuskan G.A., et al. The genome of black cottonwood, Populus trichocarpa (Torr. & Gray). Science 2000, 313:1596-1604.
15. Velasco R., et al. The genome of the domesticated apple (Malus domestica Borkh.). Nat. Genet. 2010, 42:833-839.
16. Rahman A.Y.A., et al. Draft genome sequence of the rubber tree Hevea brasiliensis. BMC Genomics 2013, 14:75.
17. Kohler A., et al. Genome-wide identification of NBS resistance genes in Populus trichocarpa. Plant Mol. Biol. 2008, 66:619-636.
18. Liu Z., et al. Identification of expressed resistance gene-like sequences by data mining in 454-derived transcriptomic sequences of common bean (Phaseolus vulgaris L.). BMC Plant Biol. 2012, 12:1471-2229.
19. The tomato genome sequence provides insights into fleshy fruit evolution. Nature 2012, 485:635-641. Tomato Genome Consortium.
20. Chan A.P., et al. Draft genome sequence of the oilseed species Ricinus communis. Nat. Biotechnol. 2010, 28:951-956.
21. Zhou T., et al. Genome-wide identification of NBS genes in japonica rice reveals significant expansion of divergent non-TIR NBS-LRR genes. Mol. Genet. Genomics 2004, 271:402-415.
22. Ghosh J., et al. Sp185/333: a novel family of genes and proteins involved in the purple sea urchin immune response. Dev. Comp. Immunol. 2010, 34:235-245.
23. Hanington P.C., et al. Role for a somatically diversified lectin in resistance of an invertebrate to parasite infection. Proc. Natl. Acad. Sci. U.S.A. 2010, 107:21087-21092.
24. Marquez Y., et al. Transcriptome survey reveals increased complexity of the alternative splicing landscape in Arabidopsis. Genome Res. 2012, 22:1184-1195.
25. Ashikawa I., et al. Two adjacent nucleotide-binding site-leucine-rich repeat class genes are required to confer Pikm-specific rice blast resistance. Genetics 2008, 180:2267-2276.
26. Gutierrez J.R., et al. Prf immune complexes of tomato are oligomeric and contain multiple Pto-like kinases that diversify effector recognition. Plant J. 2010, 61:507-518.
27. Gerstein M.B., et al. What is a gene, post-ENCODE? History and updated definition. Genome Res. 2007, 17:669-681.
28. Koonin E.V. Evolution of genome architecture. Int. J. Biochem. Cell Biol. 2009, 41:298-306.
29. Field B., Osbourn A. Order in the playground: formation of plant gene clusters in dynamic chromosomal regions. Mob. Genet. Elements 2012, 2:46-50.
30. Qi X., et al. A gene cluster for secondary metabolism in oat: implications for the evolution of metabolic diversity in plants. Proc. Natl. Acad. Sci. U.S.A. 2004, 101:8233-8238.
31. Friedman A.R., Baker B.J. The evolution of resistance genes in multi-protein plant resistance systems. Curr. Opin. Genet. Dev. 2007, 17:493-499.
32. Ober D. Gene duplications and the time thereafter - examples from plant secondary metabolism. Plant Biol. 2010, 12:570-577.
33. Ito H., et al. An siRNA pathway prevents transgenerational retrotransposition in plants subjected to stress. Nature 2011, 472:115-119.
34. Wessler S.R. Plant retrotransposons: turned on by stress. Curr. Biol. 1996, 6:959-961.
35. Robb S.M., et al. The use of RelocaTE and unassembled short reads to produce high-resolution snapshots of transposable element generated diversity in rice. G3 (Bethesda) 2013, 3:949-957.
36. Li Q., et al. Single-nucleotide resolution mapping of the Gossypium raimondii transcriptome reveals a new mechanism for alternative splicing of introns. Mol. Plant 2014, 10.1093/mp/sst175.
37. Fedoroff N.V. Transposable elements, epigenetics and genome evolution. Science 2012, 338:758-767.
38. Richter T., Ronald P. The evolution of disease resistance genes. Plant Mol. Biol. 2000, 42:195-204.
39. Klekowski E. Genetic load and its causes in long-lived plants. Trees 1988, 2:195-203.
40. Schultz S.T., Scofield D.G. Mutation accumulation in real branches: fitness assays for genomic deleterious mutation rate and effect in large statured plants. Am. Nat. 2009, 174:163-175.
41. Padovan A., et al. Differences in gene expression within a striking phenotypic mosaic Eucalyptus tree that varies in susceptibility to herbivory. BMC Plant Biol. 2013, 13:29.
42. Klekowski E. Mutation rates in mangroves and other plants. Genetica 1998, 102-103:325-331.
43. Smith S.A., Donoghue M.J. Rates of molecular evolution are linked to life history in flowering plants. Science 2008, 322:86-89.
44. Lanfear R., et al. Taller plants have lower rates of molecular evolution. Nat. Commun. 2013, 4:1879.
45. Vuosku J., et al. From seed to tree: the functioning and evolution of DNA repair in plants. DNA Repair 2011, 383-398. InTech. I. Kruman (Ed.).
46. Watson J.M., Riha K. Telomeres, aging, and plants: from weeds to Methuselah - a mini-review. Gerontology 2011, 57:129-136.
47. Thomas H. Ageing in plants. Mech. Ageing Dev. 2002, 123:747-753.
48. Al-Mssallem I.S., et al. Genome sequence of the date palm Phoenix dactylifera L. Nat. Commun. 2013, 4:2274.
49. Criscitiello M.F., de Figueiredo P. Fifty shades of immune defense. PLoS Pathog. 2013, 9:e1003110.
50. Block A., et al. Phytopathogen type III effector weaponry and their plant targets. Curr. Opin. Plant Biol. 2008, 11:396-403.
51. Jones J.D.G., Dangl J.L. The plant immune system. Nature 2006, 444:323-329.
52. Hammerschmidt R. Systemic acquired resistance. Advances in Botanical Research: Plant innate immunity 2009, 174-209. Academic Press. L.C. Van Loon (Ed.).
53. Argout X., et al. The genome of Theobroma cacao. Nat. Genet. 2011, 43:101-108.
54. Paterson A.H., et al. The Sorghum bicolor genome and the diversification of grasses. Nature 2009, 457:551-556.
55. Tiffin P. Comparative evolutionary histories of chitinase genes in the genus Zea and family Poaceae. Genetics 2004, 167:1331-1340.
56. Doring H.P., Starlinger P. Molecular genetics of transposable elements in plants. Annu. Rev. Genet. 1986, 20:175-200.