메뉴 건너뛰기




Volumn 33, Issue 1, 2015, Pages 84-101

Remnants of the legume ancestral genome preserved in gene-rich regions: Insights from lupinus angustifolius physical, genetic, and comparative mapping

Author keywords

BAC FISH; Genome; Molecular marker; Narrow leafed lupin; Sequencing; Synteny

Indexed keywords

BACTERIA (MICROORGANISMS); CAJANUS CAJAN; GLYCINE MAX; LOTUS CORNICULATUS VAR. JAPONICUS; LUPINUS ANGUSTIFOLIUS; MEDICAGO TRUNCATULA; PAPILIONOIDEAE; PHASEOLUS VULGARIS;

EID: 84901509194     PISSN: 07359640     EISSN: 15729818     Source Type: Journal    
DOI: 10.1007/s11105-014-0730-4     Document Type: Article
Times cited : (17)

References (78)
  • 1
    • 0033302755 scopus 로고    scopus 로고
    • Phylogenetic relationships in Lupinus (Fabaceae: Papilionoideae) based on internal transcribed spacer sequences (ITS) of nuclear ribosomal DNA
    • COI: 1:CAS:528:DyaK1MXivFSltrk%3D, PID: 10205079
    • Ainouche AK, Bayer RJ (1999) Phylogenetic relationships in Lupinus (Fabaceae: Papilionoideae) based on internal transcribed spacer sequences (ITS) of nuclear ribosomal DNA. Am J Bot 86:590–607
    • (1999) Am J Bot , vol.86 , pp. 590-607
    • Ainouche, A.K.1    Bayer, R.J.2
  • 2
    • 4043149437 scopus 로고    scopus 로고
    • Molecular phylogeny, diversification and character evolution in Lupinus (Fabaceae) with special attention to Mediterranean and African lupines
    • Aïnouche A, Bayer RJ, Misset M-T (2004) Molecular phylogeny, diversification and character evolution in Lupinus (Fabaceae) with special attention to Mediterranean and African lupines. Plant Syst Evol 246:211–222. doi:10.1007/s00606-004-0149-8
    • (2004) Plant Syst Evol , vol.246 , pp. 211-222
    • Aïnouche, A.1    Bayer, R.J.2    Misset, M.-T.3
  • 3
    • 84862983625 scopus 로고    scopus 로고
    • Mining plant genome browsers as a means for efficient connection of physical, genetic and cytogenetic mapping: An example using soybean
    • COI: 1:CAS:528:DC%2BC38Xht1yhsbbN, PID: 22802719
    • Belarmino LC, da S Oliveira AR, Brasileiro-Vidal AC et al (2012) Mining plant genome browsers as a means for efficient connection of physical, genetic and cytogenetic mapping: an example using soybean. Genet Mol Biol 35:335–347. doi:10.1590/S1415-47572012000200015
    • (2012) Genet Mol Biol , vol.35 , pp. 335-347
    • Belarmino, L.C.1    da S Oliveira, A.R.2    Brasileiro-Vidal, A.C.3
  • 4
    • 62749107115 scopus 로고    scopus 로고
    • An analysis of synteny of Arachis with Lotus and Medicago sheds new light on the structure, stability and evolution of legume genomes
    • PID: 19166586
    • Bertioli DJ, Moretzsohn MC, Madsen LH et al (2009) An analysis of synteny of Arachis with Lotus and Medicago sheds new light on the structure, stability and evolution of legume genomes. BMC Genomics 10:45. doi:10.1186/1471-2164-10-45
    • (2009) BMC Genomics , vol.10 , pp. 45
    • Bertioli, D.J.1    Moretzsohn, M.C.2    Madsen, L.H.3
  • 5
    • 22344433273 scopus 로고    scopus 로고
    • Construction of a genetic linkage map using MFLP and identification of molecular markers linked to domestication genes in narrow-leafed lupin (Lupinus angustifolius L.)
    • COI: 1:CAS:528:DC%2BD2MXnsVCisr0%3D, PID: 16010297
    • Boersma JG, Pallotta M, Li C et al (2005) Construction of a genetic linkage map using MFLP and identification of molecular markers linked to domestication genes in narrow-leafed lupin (Lupinus angustifolius L.). Cell Mol Biol Lett 10:331–344
    • (2005) Cell Mol Biol Lett , vol.10 , pp. 331-344
    • Boersma, J.G.1    Pallotta, M.2    Li, C.3
  • 6
    • 34248168202 scopus 로고    scopus 로고
    • Development of a sequence-specific PCR marker linked to the Ku gene which removes the vernalization requirement in narrow-leafed lupin
    • COI: 1:CAS:528:DC%2BD2sXntlOmu7k%3D
    • Boersma JG, Buirchell BJ, Sivasithamparam K, Yang H (2007a) Development of a sequence-specific PCR marker linked to the Ku gene which removes the vernalization requirement in narrow-leafed lupin. Plant Breed 126:306–309. doi:10.1111/j.1439-0523.2007.01347.x
    • (2007) Plant Breed , vol.126 , pp. 306-309
    • Boersma, J.G.1    Buirchell, B.J.2    Sivasithamparam, K.3    Yang, H.4
  • 7
    • 58149179761 scopus 로고    scopus 로고
    • Development of two sequence-specific PCR markers linked to the le gene that reduces pod shattering in narrow-leafed Lupin (Lupinus angustifolius L.)
    • COI: 1:CAS:528:DC%2BD2sXhtFSlu77F
    • Boersma JG, Buirchell BJ, Sivasithamparam K, Yang H (2007b) Development of two sequence-specific PCR markers linked to the le gene that reduces pod shattering in narrow-leafed Lupin (Lupinus angustifolius L.). Genet Mol Biol 30:623–629. doi:10.1590/S1415-47572007000400020
    • (2007) Genet Mol Biol , vol.30 , pp. 623-629
    • Boersma, J.G.1    Buirchell, B.J.2    Sivasithamparam, K.3    Yang, H.4
  • 8
    • 70350630320 scopus 로고    scopus 로고
    • Three sequenced legume genomes and many crop species: Rich opportunities for translational genomics
    • COI: 1:CAS:528:DC%2BD1MXhsVCjsb3I, PID: 19759344
    • Cannon SB, May GD, Jackson SA (2009) Three sequenced legume genomes and many crop species: rich opportunities for translational genomics. Plant Physiol 151:970–977. doi:10.1104/pp. 109.144659
    • (2009) Plant Physiol , vol.151 , pp. 970-977
    • Cannon, S.B.1    May, G.D.2    Jackson, S.A.3
  • 9
    • 0033782605 scopus 로고    scopus 로고
    • Computational and experimental characterization of physically clustered simple sequence repeats in plants
    • COI: 1:CAS:528:DC%2BD3cXnvV2ns7Y%3D, PID: 11014830
    • Cardle L, Ramsay L, Milbourne D et al (2000) Computational and experimental characterization of physically clustered simple sequence repeats in plants. Genetics 156:847–854
    • (2000) Genetics , vol.156 , pp. 847-854
    • Cardle, L.1    Ramsay, L.2    Milbourne, D.3
  • 10
    • 0036009912 scopus 로고    scopus 로고
    • An integrated physical and genetic map of the rice genome
    • PID: 11910002
    • Chen M, Presting G, Barbazuk WB et al (2002) An integrated physical and genetic map of the rice genome. Plant Cell 14:537–545
    • (2002) Plant Cell , vol.14 , pp. 537-545
    • Chen, M.1    Presting, G.2    Barbazuk, W.B.3
  • 11
    • 84860139764 scopus 로고    scopus 로고
    • Multiple continental radiations and correlates of diversification in Lupinus (Leguminosae): Testing for key innovation with incomplete taxon sampling
    • PID: 22228799
    • Drummond CS, Eastwood RJ, Miotto STS, Hughes CE (2012) Multiple continental radiations and correlates of diversification in Lupinus (Leguminosae): testing for key innovation with incomplete taxon sampling. Syst Biol 61:443–460. doi:10.1093/sysbio/syr126
    • (2012) Syst Biol , vol.61 , pp. 443-460
    • Drummond, C.S.1    Eastwood, R.J.2    Miotto, S.T.S.3    Hughes, C.E.4
  • 12
    • 0031955518 scopus 로고    scopus 로고
    • Base-calling of automated sequencer traces using phred. I. Accuracy assessment
    • COI: 1:CAS:528:DyaK1cXitlWlu78%3D, PID: 9521921
    • Ewing B, Hillier L, Wendl MC, Green P (1998) Base-calling of automated sequencer traces using phred. I. Accuracy assessment. Genome Res 8:175–185
    • (1998) Genome Res , vol.8 , pp. 175-185
    • Ewing, B.1    Hillier, L.2    Wendl, M.C.3    Green, P.4
  • 13
    • 34548590237 scopus 로고    scopus 로고
    • Construction and screening of BAC libraries made from Brachypodium genomic DNA
    • COI: 1:CAS:528:DC%2BD2sXhtFahurzL, PID: 17641631
    • Farrar K, Donnison IS (2007) Construction and screening of BAC libraries made from Brachypodium genomic DNA. Nat Protoc 2:1661–1674. doi:10.1038/nprot.2007.204
    • (2007) Nat Protoc , vol.2 , pp. 1661-1674
    • Farrar, K.1    Donnison, I.S.2
  • 14
    • 78349247548 scopus 로고    scopus 로고
    • A fluorescence in situ hybridization system for karyotyping soybean
    • COI: 1:CAS:528:DC%2BC3cXhsFOnu73F, PID: 20421607
    • Findley SD, Cannon S, Varala K et al (2010) A fluorescence in situ hybridization system for karyotyping soybean. Genetics 185:727–744. doi:10.1534/genetics.109.113753
    • (2010) Genetics , vol.185 , pp. 727-744
    • Findley, S.D.1    Cannon, S.2    Varala, K.3
  • 15
    • 0031732094 scopus 로고    scopus 로고
    • A computer program for aligning a cDNA sequence with a genomic DNA sequence
    • COI: 1:CAS:528:DyaK1cXmsVWnt74%3D, PID: 9750195
    • Florea L, Hartzell G, Zhang Z et al (1998) A computer program for aligning a cDNA sequence with a genomic DNA sequence. Genome Res 8:967–974
    • (1998) Genome Res , vol.8 , pp. 967-974
    • Florea, L.1    Hartzell, G.2    Zhang, Z.3
  • 16
    • 77954457827 scopus 로고    scopus 로고
    • Cytogenetic map of common bean (Phaseolus vulgaris L.)
    • Fonsêca A, Ferreira J, dos Santos TRB et al (2010) Cytogenetic map of common bean (Phaseolus vulgaris L.). Chromosom Res 18:487–502. doi:10.1007/s10577-010-9129-8
    • (2010) Chromosom Res , vol.18 , pp. 487-502
    • Fonsêca, A.1    Ferreira, J.2    dos Santos, T.R.B.3
  • 17
    • 80054740974 scopus 로고    scopus 로고
    • Development of genomic resources for the narrow-leafed lupin (Lupinus angustifolius): Construction of a bacterial artificial chromosome (BAC) library and BAC-end sequencing
    • COI: 1:CAS:528:DC%2BC3MXhsVaksrrJ, PID: 22014081
    • Gao L-L, Hane JK, Kamphuis LG et al (2011) Development of genomic resources for the narrow-leafed lupin (Lupinus angustifolius): construction of a bacterial artificial chromosome (BAC) library and BAC-end sequencing. BMC Genomics 12:521. doi:10.1186/1471-2164-12-521
    • (2011) BMC Genomics , vol.12 , pp. 521
    • Gao, L.-L.1    Hane, J.K.2    Kamphuis, L.G.3
  • 18
    • 55749086221 scopus 로고    scopus 로고
    • Legume anchor markers link syntenic regions between Phaseolus vulgaris, Lotus japonicus, Medicago truncatula and Arachis
    • PID: 18689902
    • Hougaard BK, Madsen LH, Sandal N et al (2008) Legume anchor markers link syntenic regions between Phaseolus vulgaris, Lotus japonicus, Medicago truncatula and Arachis. Genetics 179:2299–2312. doi:10.1534/genetics.108.090084
    • (2008) Genetics , vol.179 , pp. 2299-2312
    • Hougaard, B.K.1    Madsen, L.H.2    Sandal, N.3
  • 19
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: A DNA sequence assembly program
    • COI: 1:CAS:528:DyaK1MXmslKgs7Y%3D, PID: 10508846
    • Huang X, Madan A (1999) CAP3: a DNA sequence assembly program. Genome Res 9:868–877
    • (1999) Genome Res , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 20
    • 33745904168 scopus 로고    scopus 로고
    • Island radiation on a continental scale: Exceptional rates of plant diversification after uplift of the Andes
    • COI: 1:CAS:528:DC%2BD28XntlOhsr8%3D, PID: 16801546
    • Hughes C, Eastwood R (2006) Island radiation on a continental scale: exceptional rates of plant diversification after uplift of the Andes. Proc Natl Acad Sci U S A 103:10334–10339. doi:10.1073/pnas.0601928103
    • (2006) Proc Natl Acad Sci U S A , vol.103 , pp. 10334-10339
    • Hughes, C.1    Eastwood, R.2
  • 21
    • 0033290515 scopus 로고    scopus 로고
    • ESTScan: A program for detecting, evaluating, and reconstructing potential coding regions in EST sequences
    • Iseli C, Jongeneel CV, Bucher P (1999) ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences. Int Conf Intell Syst Mol Biol, 138–148
    • (1999) Int Conf Intell Syst Mol Biol , pp. 138-148
    • Iseli, C.1    Jongeneel, C.V.2    Bucher, P.3
  • 22
    • 23844525077 scopus 로고    scopus 로고
    • Repbase Update, a database of eukaryotic repetitive elements
    • COI: 1:STN:280:DC%2BD2Mvislertw%3D%3D, PID: 16093699
    • Jurka J, Kapitonov VV, Pavlicek A et al (2005) Repbase Update, a database of eukaryotic repetitive elements. Cytogenet Genome Res 110:462–467. doi:10.1159/000084979
    • (2005) Cytogenet Genome Res , vol.110 , pp. 462-467
    • Jurka, J.1    Kapitonov, V.V.2    Pavlicek, A.3
  • 23
    • 67149090731 scopus 로고    scopus 로고
    • Karyotyping of the narrow-leafed lupin (Lupinus angustifolius L.) by using FISH, PRINS and computer measurements of chromosomes
    • COI: 1:STN:280:DC%2BD1MvkslGisQ%3D%3D, PID: 19433903
    • Kaczmarek A, Naganowska B, Wolko B (2009) Karyotyping of the narrow-leafed lupin (Lupinus angustifolius L.) by using FISH, PRINS and computer measurements of chromosomes. J Appl Genet 50:77–82. doi:10.1007/BF03195657
    • (2009) J Appl Genet , vol.50 , pp. 77-82
    • Kaczmarek, A.1    Naganowska, B.2    Wolko, B.3
  • 24
    • 33749316650 scopus 로고    scopus 로고
    • The bacterial artificial chromosome (BAC) library of the narrow-leafed lupin (Lupinus angustifolius L.)
    • COI: 1:CAS:528:DC%2BD28Xht1Oisr7L, PID: 16847554
    • Kasprzak A, Safár J, Janda J et al (2006) The bacterial artificial chromosome (BAC) library of the narrow-leafed lupin (Lupinus angustifolius L.). Cell Mol Biol Lett 11:396–407. doi:10.2478/s11658-006-0033-3
    • (2006) Cell Mol Biol Lett , vol.11 , pp. 396-407
    • Kasprzak, A.1    Safár, J.2    Janda, J.3
  • 25
    • 25444432580 scopus 로고    scopus 로고
    • A BAC-based physical map of the Nile tilapia genome
    • PID: 15946383
    • Katagiri T, Kidd C, Tomasino E et al (2005) A BAC-based physical map of the Nile tilapia genome. BMC Genomics 6:89. doi:10.1186/1471-2164-6-89
    • (2005) BMC Genomics , vol.6 , pp. 89
    • Katagiri, T.1    Kidd, C.2    Tomasino, E.3
  • 26
    • 0027650566 scopus 로고
    • A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markers
    • COI: 1:CAS:528:DyaK2cXht1Khtbo%3D, PID: 8106085
    • Konieczny A, Ausubel FM (1993) A procedure for mapping Arabidopsis mutations using co-dominant ecotype-specific PCR-based markers. Plant J 4:403–410
    • (1993) Plant J , vol.4 , pp. 403-410
    • Konieczny, A.1    Ausubel, F.M.2
  • 27
    • 69649109364 scopus 로고    scopus 로고
    • Circos: An information aesthetic for comparative genomics
    • COI: 1:CAS:528:DC%2BD1MXhtFCjsLvJ, PID: 19541911
    • Krzywinski M, Schein J, Birol I et al (2009) Circos: an information aesthetic for comparative genomics. Genome Res 19:1639–1645. doi:10.1101/gr.092759.109
    • (2009) Genome Res , vol.19 , pp. 1639-1645
    • Krzywinski, M.1    Schein, J.2    Birol, I.3
  • 28
    • 84873245917 scopus 로고    scopus 로고
    • Comparative genomics of Lupinus angustifolius gene-rich regions: BAC library exploration, genetic mapping and cytogenetics
    • PID: 23379841
    • Książkiewicz M, Wyrwa K, Szczepaniak A et al (2013) Comparative genomics of Lupinus angustifolius gene-rich regions: BAC library exploration, genetic mapping and cytogenetics. BMC Genomics 14:79. doi:10.1186/1471-2164-14-79
    • (2013) BMC Genomics , vol.14 , pp. 79
    • Książkiewicz, M.1    Wyrwa, K.2    Szczepaniak, A.3
  • 29
    • 25144446148 scopus 로고    scopus 로고
    • Evolutionary rates analysis of Leguminosae implicates a rapid diversification of lineages during the tertiary
    • PID: 16085576
    • Lavin M, Herendeen PS, Wojciechowski MF (2005) Evolutionary rates analysis of Leguminosae implicates a rapid diversification of lineages during the tertiary. Syst Biol 54:575–594. doi:10.1080/10635150590947131
    • (2005) Syst Biol , vol.54 , pp. 575-594
    • Lavin, M.1    Herendeen, P.S.2    Wojciechowski, M.F.3
  • 30
    • 79951994093 scopus 로고    scopus 로고
    • Assignment of 3 genetic linkage groups to 3 chromosomes of narrow-leafed lupin
    • COI: 1:CAS:528:DC%2BC3MXitlaksrc%3D, PID: 20947695
    • Lesniewska K, Ksiazkiewicz M, Nelson MN et al (2011) Assignment of 3 genetic linkage groups to 3 chromosomes of narrow-leafed lupin. J Hered 102:228–236. doi:10.1093/jhered/esq107
    • (2011) J Hered , vol.102 , pp. 228-236
    • Lesniewska, K.1    Ksiazkiewicz, M.2    Nelson, M.N.3
  • 32
    • 78049321016 scopus 로고    scopus 로고
    • Development of a co-dominant DNA marker tightly linked to gene tardus conferring reduced pod shattering in narrow-leafed lupin (Lupinus angustifolius L.)
    • COI: 1:CAS:528:DC%2BC3cXhtlShtr7E
    • Li X, Renshaw D, Yang H, Yan G (2010) Development of a co-dominant DNA marker tightly linked to gene tardus conferring reduced pod shattering in narrow-leafed lupin (Lupinus angustifolius L.). Euphytica 176:49–58. doi:10.1007/s10681-010-0212-1
    • (2010) Euphytica , vol.176 , pp. 49-58
    • Li, X.1    Renshaw, D.2    Yang, H.3    Yan, G.4
  • 33
    • 84856746254 scopus 로고    scopus 로고
    • A molecular marker linked to the mollis gene conferring soft-seediness for marker-assisted selection applicable to a wide range of crosses in lupin (Lupinus angustifolius L.) breeding
    • Li X, Buirchell B, Yan G, Yang H (2012) A molecular marker linked to the mollis gene conferring soft-seediness for marker-assisted selection applicable to a wide range of crosses in lupin (Lupinus angustifolius L.) breeding. Mol Breed 29:361–370. doi:10.1007/s11032-011-9552-3
    • (2012) Mol Breed , vol.29 , pp. 361-370
    • Li, X.1    Buirchell, B.2    Yan, G.3    Yang, H.4
  • 34
    • 77957764187 scopus 로고    scopus 로고
    • Structural and functional divergence of a 1-Mb duplicated region in the soybean (Glycine max) genome and comparison to an orthologous region from Phaseolus vulgaris
    • COI: 1:CAS:528:DC%2BC3cXhtlegsb3N, PID: 20729383
    • Lin J-Y, Stupar RM, Hans C et al (2010) Structural and functional divergence of a 1-Mb duplicated region in the soybean (Glycine max) genome and comparison to an orthologous region from Phaseolus vulgaris. Plant Cell 22:2545–2561. doi:10.1105/tpc.110.074229
    • (2010) Plant Cell , vol.22 , pp. 2545-2561
    • Lin, J.-Y.1    Stupar, R.M.2    Hans, C.3
  • 35
    • 57149089296 scopus 로고    scopus 로고
    • Finding and comparing syntenic regions among Arabidopsis and the outgroups papaya, poplar, and grape: CoGe with Rosids
    • COI: 1:CAS:528:DC%2BD1cXhsFemtrjF, PID: 18952863
    • Lyons E, Pedersen B, Kane J et al (2008) Finding and comparing syntenic regions among Arabidopsis and the outgroups papaya, poplar, and grape: CoGe with Rosids. Plant Physiol 148:1772–1781. doi:10.1104/pp. 108.124867
    • (2008) Plant Physiol , vol.148 , pp. 1772-1781
    • Lyons, E.1    Pedersen, B.2    Kane, J.3
  • 36
    • 0035164656 scopus 로고    scopus 로고
    • Map Manager QTX, cross-platform software for genetic mapping
    • COI: 1:CAS:528:DC%2BD3MXosFGgtbo%3D, PID: 11707780
    • Manly KF, Robert H, Cudmore J, Meer JM (2001) Map Manager QTX, cross-platform software for genetic mapping. Mamm Genome 12:930–932. doi:10.1007/s00335-001-1016-3
    • (2001) Mamm Genome , vol.12 , pp. 930-932
    • Manly, K.F.1    Robert, H.2    Cudmore, J.3    Meer, J.M.4
  • 37
    • 0031263075 scopus 로고    scopus 로고
    • High throughput fingerprint analysis of large-insert clones
    • COI: 1:CAS:528:DyaK2sXns1Oisrc%3D, PID: 9371743
    • Marra MA, Kucaba TA, Dietrich NL et al (1997) High throughput fingerprint analysis of large-insert clones. Genome Res 7:1072–1084
    • (1997) Genome Res , vol.7 , pp. 1072-1084
    • Marra, M.A.1    Kucaba, T.A.2    Dietrich, N.L.3
  • 38
    • 77951933487 scopus 로고    scopus 로고
    • Synteny mapping between common bean and soybean reveals extensive blocks of shared loci
    • PID: 20298570
    • McClean PE, Mamidi S, McConnell M et al (2010) Synteny mapping between common bean and soybean reveals extensive blocks of shared loci. BMC Genomics 11:184. doi:10.1186/1471-2164-11-184
    • (2010) BMC Genomics , vol.11 , pp. 184
    • McClean, P.E.1    Mamidi, S.2    McConnell, M.3
  • 39
    • 78649534653 scopus 로고    scopus 로고
    • Syntenic relationships among legumes revealed using a gene-based genetic linkage map of common bean (Phaseolus vulgaris L.)
    • PID: 20607211
    • McConnell M, Mamidi S, Lee R et al (2010) Syntenic relationships among legumes revealed using a gene-based genetic linkage map of common bean (Phaseolus vulgaris L.). Theor Appl Genet 121:1103–1116. doi:10.1007/s00122-010-1375-9
    • (2010) Theor Appl Genet , vol.121 , pp. 1103-1116
    • McConnell, M.1    Mamidi, S.2    Lee, R.3
  • 40
    • 33646200505 scopus 로고    scopus 로고
    • Distribution of microsatellites in the genome of Medicago truncatula: A resource of genetic markers that integrate genetic and physical maps
    • COI: 1:CAS:528:DC%2BD28XkvFOgtLw%3D, PID: 16489220
    • Mun J-H, Kim D-J, Choi H-K et al (2006) Distribution of microsatellites in the genome of Medicago truncatula: a resource of genetic markers that integrate genetic and physical maps. Genetics 172:2541–2555. doi:10.1534/genetics.105.054791
    • (2006) Genetics , vol.172 , pp. 2541-2555
    • Mun, J.-H.1    Kim, D.-J.2    Choi, H.-K.3
  • 41
    • 0141685915 scopus 로고    scopus 로고
    • Nuclear DNA content variation and species relationships in the genus Lupinus (Fabaceae)
    • COI: 1:CAS:528:DC%2BD3sXnvVShsL8%3D, PID: 12853281
    • Naganowska B, Wolko B, Sliwińska E, Kaczmarek Z (2003) Nuclear DNA content variation and species relationships in the genus Lupinus (Fabaceae). Ann Bot 92(3):349–355. doi:10.1093/aob/mcg145
    • (2003) Ann Bot , vol.92 , Issue.3 , pp. 349-355
    • Naganowska, B.1    Wolko, B.2    Sliwińska, E.3    Kaczmarek, Z.4
  • 42
    • 0036890406 scopus 로고    scopus 로고
    • Web-based primer design for single nucleotide polymorphism analysis
    • COI: 1:CAS:528:DC%2BD38XoslCgurg%3D, PID: 12446140
    • Neff MM, Turk E, Kalishman M (2002) Web-based primer design for single nucleotide polymorphism analysis. Trends Genet 18:613–615
    • (2002) Trends Genet , vol.18 , pp. 613-615
    • Neff, M.M.1    Turk, E.2    Kalishman, M.3
  • 43
    • 33745482805 scopus 로고    scopus 로고
    • The first gene-based map of Lupinus angustifolius L.—location of domestication genes and conserved synteny with Medicago truncatula
    • COI: 1:CAS:528:DC%2BD28XmtFSit7s%3D, PID: 16791689
    • Nelson MN, Phan HTT, Ellwood SR et al (2006) The first gene-based map of Lupinus angustifolius L.—location of domestication genes and conserved synteny with Medicago truncatula. Theor Appl Genet 113:225–238. doi:10.1007/s00122-006-0288-0
    • (2006) Theor Appl Genet , vol.113 , pp. 225-238
    • Nelson, M.N.1    Phan, H.T.T.2    Ellwood, S.R.3
  • 44
    • 77951097475 scopus 로고    scopus 로고
    • Aligning a new reference genetic map of Lupinus angustifolius with the genome sequence of the model legume, Lotus japonicus
    • COI: 1:CAS:528:DC%2BC3cXkvVymtbw%3D, PID: 20133394
    • Nelson MN, Moolhuijzen PM, Boersma JG et al (2010) Aligning a new reference genetic map of Lupinus angustifolius with the genome sequence of the model legume, Lotus japonicus. DNA Res 17:73–83. doi:10.1093/dnares/dsq001
    • (2010) DNA Res , vol.17 , pp. 73-83
    • Nelson, M.N.1    Moolhuijzen, P.M.2    Boersma, J.G.3
  • 45
    • 33644541795 scopus 로고    scopus 로고
    • A physical map of the genome of Atlantic salmon, Salmo salar
    • COI: 1:CAS:528:DC%2BD2MXpsFyqsLc%3D, PID: 16026963
    • Ng SHS, Artieri CG, Bosdet IE et al (2005) A physical map of the genome of Atlantic salmon, Salmo salar. Genomics 86:396–404. doi:10.1016/j.ygeno.2005.06.001
    • (2005) Genomics , vol.86 , pp. 396-404
    • Ng, S.H.S.1    Artieri, C.G.2    Bosdet, I.E.3
  • 46
    • 84873268287 scopus 로고    scopus 로고
    • An RNA-Seq transcriptome analysis of orthophosphate-deficient white lupin reveals novel insights into phosphorus acclimation in plants
    • PID: 23197803
    • O’Rourke JA, Yang SS, Miller SS et al (2013) An RNA-Seq transcriptome analysis of orthophosphate-deficient white lupin reveals novel insights into phosphorus acclimation in plants. Plant Physiol 161:705–724. doi:10.1104/pp. 112.209254
    • (2013) Plant Physiol , vol.161 , pp. 705-724
    • O’Rourke, J.A.1    Yang, S.S.2    Miller, S.S.3
  • 47
    • 84867642934 scopus 로고    scopus 로고
    • Yellow lupin (Lupinus luteus L.) transcriptome sequencing: Molecular marker development and comparative studies
    • PID: 22920992
    • Parra-González LB, Aravena-Abarzúa GA, Navarro-Navarro CS et al (2012) Yellow lupin (Lupinus luteus L.) transcriptome sequencing: molecular marker development and comparative studies. BMC Genomics 13:425
    • (2012) BMC Genomics , vol.13 , pp. 425
    • Parra-González, L.B.1    Aravena-Abarzúa, G.A.2    Navarro-Navarro, C.S.3
  • 48
    • 0036670744 scopus 로고    scopus 로고
    • Chromosomal map of the model legume Lotus japonicus
    • COI: 1:CAS:528:DC%2BD38XnsVClu7k%3D, PID: 12196409
    • Pedrosa A, Sandal N, Stougaard J et al (2002) Chromosomal map of the model legume Lotus japonicus. Genetics 161:1661–1672
    • (2002) Genetics , vol.161 , pp. 1661-1672
    • Pedrosa, A.1    Sandal, N.2    Stougaard, J.3
  • 49
    • 80054708224 scopus 로고    scopus 로고
    • Genic microsatellite markers in Brassica rapa: Development, characterization, mapping, and their utility in other cultivated and wild Brassica relatives
    • COI: 1:CAS:528:DC%2BC3MXhtlaisLzF, PID: 21768136
    • Ramchiary N, Nguyen VD, Li X et al (2011) Genic microsatellite markers in Brassica rapa: development, characterization, mapping, and their utility in other cultivated and wild Brassica relatives. DNA Res 18:305–320. doi:10.1093/dnares/dsr017
    • (2011) DNA Res , vol.18 , pp. 305-320
    • Ramchiary, N.1    Nguyen, V.D.2    Li, X.3
  • 50
    • 84900874450 scopus 로고    scopus 로고
    • In silico comparison of genomic regions containing genes coding for enzymes and transcription factors for the phenylpropanoid pathway in Phaseolus vulgaris L. and Glycine max L. Merr. Front
    • Reinprecht Y, Yadegari Z, Perry GE et al (2013) In silico comparison of genomic regions containing genes coding for enzymes and transcription factors for the phenylpropanoid pathway in Phaseolus vulgaris L. and Glycine max L. Merr. Front. Plant Sci 4:317
    • (2013) Plant Sci , vol.4 , pp. 317
    • Reinprecht, Y.1    Yadegari, Z.2    Perry, G.E.3
  • 51
    • 79960889508 scopus 로고    scopus 로고
    • GSV: A web-based genome synteny viewer for customized data
    • COI: 1:CAS:528:DC%2BC3MXhtFajtLvK
    • Revanna KV, Chiu C-C, Bierschank E, Dong Q (2011) GSV: a web-based genome synteny viewer for customized data. BMC Bioinforma 12:316. doi:10.1186/1471-2105-12-316
    • (2011) BMC Bioinforma , vol.12 , pp. 316
    • Revanna, K.V.1    Chiu, C.-C.2    Bierschank, E.3    Dong, Q.4
  • 52
    • 0034065724 scopus 로고    scopus 로고
    • Ab initio gene finding in Drosophila genomic DNA
    • COI: 1:CAS:528:DC%2BD3cXjtVKrs7Y%3D, PID: 10779491
    • Salamov AA, Solovyev VV (2000) Ab initio gene finding in Drosophila genomic DNA. Genome Res 10:516–522
    • (2000) Genome Res , vol.10 , pp. 516-522
    • Salamov, A.A.1    Solovyev, V.V.2
  • 53
    • 56149088569 scopus 로고    scopus 로고
    • Genome structure of the legume, Lotus japonicus
    • COI: 1:CAS:528:DC%2BD1cXht12ht7zO, PID: 18511435
    • Sato S, Nakamura Y, Kaneko T et al (2008) Genome structure of the legume, Lotus japonicus. DNA Res 15:227–239. doi:10.1093/dnares/dsn008
    • (2008) DNA Res , vol.15 , pp. 227-239
    • Sato, S.1    Nakamura, Y.2    Kaneko, T.3
  • 54
    • 77951173127 scopus 로고    scopus 로고
    • Structural analyses of the genomes in legumes
    • COI: 1:CAS:528:DC%2BC3cXlsFahsrk%3D, PID: 20071214
    • Sato S, Isobe S, Tabata S (2010) Structural analyses of the genomes in legumes. Curr Opin Plant Biol 13:146–152. doi:10.1016/j.pbi.2009.12.007
    • (2010) Curr Opin Plant Biol , vol.13 , pp. 146-152
    • Sato, S.1    Isobe, S.2    Tabata, S.3
  • 55
    • 49949111191 scopus 로고    scopus 로고
    • Fractionation of synteny in a genomic region containing tandemly duplicated genes across Glycine max, Medicago truncatula, and Arabidopsis thaliana
    • COI: 1:CAS:528:DC%2BD1cXnt1SmsLY%3D, PID: 18316321
    • Schlueter JA, Scheffler BE, Jackson S, Shoemaker RC (2008) Fractionation of synteny in a genomic region containing tandemly duplicated genes across Glycine max, Medicago truncatula, and Arabidopsis thaliana. J Hered 99:390–395. doi:10.1093/jhered/esn010
    • (2008) J Hered , vol.99 , pp. 390-395
    • Schlueter, J.A.1    Scheffler, B.E.2    Jackson, S.3    Shoemaker, R.C.4
  • 56
    • 74549221016 scopus 로고    scopus 로고
    • Genome sequence of the palaeopolyploid soybean
    • COI: 1:CAS:528:DC%2BC3cXntVClsQ%3D%3D, PID: 20075913
    • Schmutz J, Cannon SB, Schlueter J et al (2010) Genome sequence of the palaeopolyploid soybean. Nature 463:178–183. doi:10.1038/nature08670
    • (2010) Nature , vol.463 , pp. 178-183
    • Schmutz, J.1    Cannon, S.B.2    Schlueter, J.3
  • 57
    • 15044345818 scopus 로고    scopus 로고
    • Distribution of genes and recombination on wheat homoeologous group 6 chromosomes: A synthesis of available information
    • COI: 1:CAS:528:DC%2BD2MXhslyrsr0%3D
    • Shah MM, Hassan A (2005) Distribution of genes and recombination on wheat homoeologous group 6 chromosomes: a synthesis of available information. Mol Breed 15:45–53. doi:10.1007/s11032-004-1844-4
    • (2005) Mol Breed , vol.15 , pp. 45-53
    • Shah, M.M.1    Hassan, A.2
  • 58
    • 33644532857 scopus 로고    scopus 로고
    • Paleopolyploidy and gene duplication in soybean and other legumes
    • COI: 1:CAS:528:DC%2BD28XhvVWrtb8%3D, PID: 16458041
    • Shoemaker RC, Schlueter J, Doyle JJ (2006) Paleopolyploidy and gene duplication in soybean and other legumes. Curr Opin Plant Biol 9:104–109. doi:10.1016/j.pbi.2006.01.007
    • (2006) Curr Opin Plant Biol , vol.9 , pp. 104-109
    • Shoemaker, R.C.1    Schlueter, J.2    Doyle, J.J.3
  • 59
    • 0030690108 scopus 로고    scopus 로고
    • FPC: A system for building contigs from restriction fingerprinted clones
    • COI: 1:CAS:528:DyaK2sXntlGntrY%3D, PID: 9367125
    • Soderlund C, Longden I, Mott R (1997) FPC: a system for building contigs from restriction fingerprinted clones. Comput Appl Biosci 13:523–535
    • (1997) Comput Appl Biosci , vol.13 , pp. 523-535
    • Soderlund, C.1    Longden, I.2    Mott, R.3
  • 60
    • 23144444421 scopus 로고    scopus 로고
    • AUGUSTUS: A web server for gene prediction in eukaryotes that allows user-defined constraints
    • COI: 1:CAS:528:DC%2BD2MXlslyqt78%3D, PID: 15980513
    • Stanke M, Morgenstern B (2005) AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints. Nucleic Acids Res 33:W465–W467. doi:10.1093/nar/gki458
    • (2005) Nucleic Acids Res , vol.33 , pp. W465-W467
    • Stanke, M.1    Morgenstern, B.2
  • 61
    • 63449136381 scopus 로고    scopus 로고
    • Relationships among phaseoloid legumes based on sequences from eight chloroplast regions
    • Stefanović S, Pfeil BE, Palmer JD, Doyle JJ (2009) Relationships among phaseoloid legumes based on sequences from eight chloroplast regions. Syst Bot 34:115–128. doi:10.1600/036364409787602221
    • (2009) Syst Bot , vol.34 , pp. 115-128
    • Stefanović, S.1    Pfeil, B.E.2    Palmer, J.D.3    Doyle, J.J.4
  • 62
    • 0024523540 scopus 로고
    • Image analysis of restriction enzyme fingerprint autoradiograms
    • COI: 1:CAS:528:DyaL1MXkvFWlur0%3D, PID: 2720459
    • Sulston J, Mallett F, Durbin R, Horsnell T (1989) Image analysis of restriction enzyme fingerprint autoradiograms. Comput Appl Biosci 5:101–106
    • (1989) Comput Appl Biosci , vol.5 , pp. 101-106
    • Sulston, J.1    Mallett, F.2    Durbin, R.3    Horsnell, T.4
  • 64
    • 0034882994 scopus 로고    scopus 로고
    • Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): Frequency, length variation, transposon associations, and genetic marker potential
    • COI: 1:CAS:528:DC%2BD3MXlvVGgu70%3D, PID: 11483586
    • Temnykh S, DeClerck G, Lukashova A et al (2001) Computational and experimental analysis of microsatellites in rice (Oryza sativa L.): frequency, length variation, transposon associations, and genetic marker potential. Genome Res 11:1441–1452. doi:10.1101/gr.184001
    • (2001) Genome Res , vol.11 , pp. 1441-1452
    • Temnykh, S.1    DeClerck, G.2    Lukashova, A.3
  • 65
    • 34547591343 scopus 로고    scopus 로고
    • Primer3Plus, an enhanced web interface to Primer3
    • PID: 17485472
    • Untergasser A, Nijveen H, Rao X et al (2007) Primer3Plus, an enhanced web interface to Primer3. Nucleic Acids Res 35:W71–W74. doi:10.1093/nar/gkm306
    • (2007) Nucleic Acids Res , vol.35 , pp. W71-W74
    • Untergasser, A.1    Nijveen, H.2    Rao, X.3
  • 66
    • 84862956715 scopus 로고    scopus 로고
    • Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers
    • COI: 1:CAS:528:DC%2BC3MXhsVagu7%2FO
    • Varshney RK, Chen W, Li Y et al (2012) Draft genome sequence of pigeonpea (Cajanus cajan), an orphan legume crop of resource-poor farmers. Nat Biotechnol 30:83–89. doi:10.1038/nbt.2022
    • (2012) Nat Biotechnol , vol.30 , pp. 83-89
    • Varshney, R.K.1    Chen, W.2    Li, Y.3
  • 67
    • 0036256695 scopus 로고    scopus 로고
    • MapChart: Software for the graphical presentation of linkage maps and QTLs
    • COI: 1:CAS:528:DC%2BD38XktlOntrw%3D, PID: 12011185
    • Voorrips RE (2002) MapChart: software for the graphical presentation of linkage maps and QTLs. J Hered 93:77–78
    • (2002) J Hered , vol.93 , pp. 77-78
    • Voorrips, R.E.1
  • 68
    • 41349112356 scopus 로고    scopus 로고
    • An integrated genetic and physical map of homologous chromosomes 12 and 26 in upland cotton (G. hirsutum L.)
    • PID: 18307816
    • Xu Z, Kohel RJ, Song G et al (2008) An integrated genetic and physical map of homologous chromosomes 12 and 26 in upland cotton (G. hirsutum L.). BMC Genomics 9:108
    • (2008) BMC Genomics , vol.9 , pp. 108
    • Xu, Z.1    Kohel, R.J.2    Song, G.3
  • 69
    • 0034921265 scopus 로고    scopus 로고
    • DNA fingerprinting based on microsatellite-anchored fragment length polymorphisms, and isolation of sequence-specific PCR markers in lupin (Lupinus angustifolius L.)
    • Yang H, Sweetingham MW, Cowling WA, Smith PMC (2001) DNA fingerprinting based on microsatellite-anchored fragment length polymorphisms, and isolation of sequence-specific PCR markers in lupin (Lupinus angustifolius L.). Mol Breed 7:203–209. doi:10.1023/A:1011363205557
    • (2001) Mol Breed , vol.7 , pp. 203-209
    • Yang, H.1    Sweetingham, M.W.2    Cowling, W.A.3    Smith, P.M.C.4
  • 70
    • 0346666776 scopus 로고    scopus 로고
    • Development of molecular markers using MFLP linked to a gene conferring resistance to Diaporthe toxica in narrow-leafed lupin (Lupinus angustifolius L.)
    • COI: 1:CAS:528:DC%2BD38Xntlaqu7g%3D, PID: 12582528
    • Yang H, Shankar M, Buirchell J et al (2002) Development of molecular markers using MFLP linked to a gene conferring resistance to Diaporthe toxica in narrow-leafed lupin (Lupinus angustifolius L.). Theor Appl Genet 105:265–270. doi:10.1007/s00122-002-0925-1
    • (2002) Theor Appl Genet , vol.105 , pp. 265-270
    • Yang, H.1    Shankar, M.2    Buirchell, J.3
  • 71
    • 4444225114 scopus 로고    scopus 로고
    • Development and implementation of a sequence-specific PCR marker linked to a gene conferring resistance to anthracnose disease in narrow-leafed lupin (Lupinus angustifolius L.)
    • COI: 1:CAS:528:DC%2BD2cXms12itrs%3D
    • Yang H, Boersma JG, You M et al (2004) Development and implementation of a sequence-specific PCR marker linked to a gene conferring resistance to anthracnose disease in narrow-leafed lupin (Lupinus angustifolius L.). Mol Breed 14:145–151. doi:10.1023/B:MOLB.0000038003.49638.97
    • (2004) Mol Breed , vol.14 , pp. 145-151
    • Yang, H.1    Boersma, J.G.2    You, M.3
  • 72
    • 41549088845 scopus 로고    scopus 로고
    • A strategy to develop molecular markers applicable to a wide range of crosses for marker assisted selection in plant breeding: A case study on anthracnose disease resistance in lupin (Lupinus angustifolius L.)
    • Yang H, Renshaw D, Thomas G et al (2008) A strategy to develop molecular markers applicable to a wide range of crosses for marker assisted selection in plant breeding: a case study on anthracnose disease resistance in lupin (Lupinus angustifolius L.). Mol Breed 21:473–483. doi:10.1007/s11032-007-9146-2
    • (2008) Mol Breed , vol.21 , pp. 473-483
    • Yang, H.1    Renshaw, D.2    Thomas, G.3
  • 73
    • 84865706478 scopus 로고    scopus 로고
    • Application of next-generation sequencing for rapid marker development in molecular plant breeding: A case study on anthracnose disease resistance in Lupinus angustifolius L
    • COI: 1:CAS:528:DC%2BC38Xhslaju7rI, PID: 22805587
    • Yang H, Tao Y, Zheng Z et al (2012) Application of next-generation sequencing for rapid marker development in molecular plant breeding: a case study on anthracnose disease resistance in Lupinus angustifolius L. BMC Genomics 13:318. doi:10.1186/1471-2164-13-318
    • (2012) BMC Genomics , vol.13 , pp. 318
    • Yang, H.1    Tao, Y.2    Zheng, Z.3
  • 74
    • 84873086866 scopus 로고    scopus 로고
    • Rapid development of molecular markers by next-generation sequencing linked to a gene conferring phomopsis stem blight disease resistance for marker-assisted selection in lupin (Lupinus angustifolius L.) breeding
    • COI: 1:CAS:528:DC%2BC3sXhslakurk%3D, PID: 23086512
    • Yang H, Tao Y, Zheng Z et al (2013a) Rapid development of molecular markers by next-generation sequencing linked to a gene conferring phomopsis stem blight disease resistance for marker-assisted selection in lupin (Lupinus angustifolius L.) breeding. Theor Appl Genet 126:511–522. doi:10.1007/s00122-012-1997-1
    • (2013) Theor Appl Genet , vol.126 , pp. 511-522
    • Yang, H.1    Tao, Y.2    Zheng, Z.3
  • 75
    • 84878456619 scopus 로고    scopus 로고
    • Draft genome sequence, and a sequence-defined genetic linkage map of the legume crop species Lupinus angustifolius L
    • COI: 1:CAS:528:DC%2BC3sXpsFenu7w%3D, PID: 23734219
    • Yang H, Tao Y, Zheng Z et al (2013b) Draft genome sequence, and a sequence-defined genetic linkage map of the legume crop species Lupinus angustifolius L. PLoS One 8:e64799. doi:10.1371/journal.pone.0064799
    • (2013) PLoS One , vol.8 , pp. e64799
    • Yang, H.1    Tao, Y.2    Zheng, Z.3
  • 76
    • 17644403984 scopus 로고    scopus 로고
    • A PCR-based molecular marker applicable for marker-assisted selection for anthracnose disease resistance in lupin breeding
    • COI: 1:CAS:528:DC%2BD2MXksVygt7g%3D, PID: 15809684
    • You M, Boersma JG, Buirchell BJ et al (2005) A PCR-based molecular marker applicable for marker-assisted selection for anthracnose disease resistance in lupin breeding. Cell Mol Biol Lett 10:123–134
    • (2005) Cell Mol Biol Lett , vol.10 , pp. 123-134
    • You, M.1    Boersma, J.G.2    Buirchell, B.J.3
  • 77
    • 84355166513 scopus 로고    scopus 로고
    • The Medicago genome provides insight into the evolution of rhizobial symbioses
    • COI: 1:CAS:528:DC%2BC3MXhsVOitr7N, PID: 22089132
    • Young ND, Debellé F, Oldroyd GED et al (2011) The Medicago genome provides insight into the evolution of rhizobial symbioses. Nature 480:520–524. doi:10.1038/nature10625
    • (2011) Nature , vol.480 , pp. 520-524
    • Young, N.D.1    Debellé, F.2    Oldroyd, G.E.D.3
  • 78
    • 84869439187 scopus 로고    scopus 로고
    • Annotating a non-model plant genome—a study on the narrow-leafed lupin
    • COI: 1:CAS:528:DC%2BC3sXit1Wksbs%3D
    • Zielezinski A, Potarzycki P, Książkiewicz M, Karłowski W (2012) Annotating a non-model plant genome—a study on the narrow-leafed lupin. Biotechnologia 93:318–332
    • (2012) Biotechnologia , vol.93 , pp. 318-332
    • Zielezinski, A.1    Potarzycki, P.2    Książkiewicz, M.3    Karłowski, W.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.