메뉴 건너뛰기




Volumn 11, Issue 1, 2010, Pages

Synteny mapping between common bean and soybean reveals extensive blocks of shared loci

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BEAN; CHROMATIN ASSEMBLY AND DISASSEMBLY; CONTIG MAPPING; CONTROLLED STUDY; EXPRESSED SEQUENCE TAG; GENE DUPLICATION; GENE LOCUS; GENETIC LINKAGE; GENETIC TRANSCRIPTION; MOLECULAR PHYLOGENY; NONHUMAN; NUCLEOTIDE SEQUENCE; POLYPLOIDY; PSEUDOCHROMOSOME ASSEMBLY; SEQUENCE HOMOLOGY; SOYBEAN; SYNTENY; CHROMOSOME MAP; COMPARATIVE GENOMIC HYBRIDIZATION; DNA SEQUENCE; GENETICS; MOLECULAR EVOLUTION; PHYLOGENY; PLANT CHROMOSOME; PLANT GENOME;

EID: 77951933487     PISSN: None     EISSN: 14712164     Source Type: Journal    
DOI: 10.1186/1471-2164-11-184     Document Type: Article
Times cited : (96)

References (42)
  • 1
    • 0000258233 scopus 로고
    • RFLP maps based on a common set of clones reveal modes of chromosomal evolution in potato and tomato
    • 1203572, 17246486
    • Bonierbale MW, Plaisted RL, Tanksley SD. RFLP maps based on a common set of clones reveal modes of chromosomal evolution in potato and tomato. Genetics 1988, 120:1095-1103. 1203572, 17246486.
    • (1988) Genetics , vol.120 , pp. 1095-1103
    • Bonierbale, M.W.1    Plaisted, R.L.2    Tanksley, S.D.3
  • 3
    • 0000181955 scopus 로고
    • Conservation of gene repertoire but not gene order in pepper and tomato
    • 10.1073/pnas.85.17.6419, 281983, 16593975
    • Tanksley SD, Bernatzky R, Lapitan NL, Prince JP. Conservation of gene repertoire but not gene order in pepper and tomato. Proc Natl Acad Sci USA 1988, 85:6419-6423. 10.1073/pnas.85.17.6419, 281983, 16593975.
    • (1988) Proc Natl Acad Sci USA , vol.85 , pp. 6419-6423
    • Tanksley, S.D.1    Bernatzky, R.2    Lapitan, N.L.3    Prince, J.P.4
  • 4
    • 0026437702 scopus 로고
    • Comparative genome mapping of sorghum and maize
    • 1205233, 1360933
    • Whitkus R, Doebley J, Lee M. Comparative genome mapping of sorghum and maize. Genetics 1992, 132:1119-1130. 1205233, 1360933.
    • (1992) Genetics , vol.132 , pp. 1119-1130
    • Whitkus, R.1    Doebley, J.2    Lee, M.3
  • 5
    • 0032478340 scopus 로고
    • Comparative genetics in the grasses
    • Gale M, Devos K. Comparative genetics in the grasses. Proc Natl Acad Sci USA 1993, 95:1971-1974.
    • (1993) Proc Natl Acad Sci USA , vol.95 , pp. 1971-1974
    • Gale, M.1    Devos, K.2
  • 7
    • 0037572292 scopus 로고    scopus 로고
    • Patterns of genome duplication within the Brassica napus genome
    • 10.1139/g03-006, 12723045
    • Parkin IAP, Sharpe AG, Lydiate DJ. Patterns of genome duplication within the Brassica napus genome. Genome 2003, 46:291-303. 10.1139/g03-006, 12723045.
    • (2003) Genome , vol.46 , pp. 291-303
    • Parkin, I.A.P.1    Sharpe, A.G.2    Lydiate, D.J.3
  • 8
    • 31544442199 scopus 로고    scopus 로고
    • Segmental structure of the Brassica napus genome based on comparative analysis with Arabidopsis thaliana
    • 10.1534/genetics.105.042093, 1456786, 16020789
    • Parkin IAP, Gulden SM, Sharpe AG, Lukens L, Trick M, Osborn TC, Lydiate DJ. Segmental structure of the Brassica napus genome based on comparative analysis with Arabidopsis thaliana. Genetics 2005, 171:765-781. 10.1534/genetics.105.042093, 1456786, 16020789.
    • (2005) Genetics , vol.171 , pp. 765-781
    • Parkin, I.A.P.1    Gulden, S.M.2    Sharpe, A.G.3    Lukens, L.4    Trick, M.5    Osborn, T.C.6    Lydiate, D.J.7
  • 9
    • 21044456647 scopus 로고    scopus 로고
    • Fossil evidence and phylogeny: the age of major angiosperm clades based on mesofossil and macrofossil evidence from Cretaceous deposits
    • Crepet WL, Nixon KC, Gandolfo MA. Fossil evidence and phylogeny: the age of major angiosperm clades based on mesofossil and macrofossil evidence from Cretaceous deposits. Amer J Bot 2004, 91:1666-1682.
    • (2004) Amer J Bot , vol.91 , pp. 1666-1682
    • Crepet, W.L.1    Nixon, K.C.2    Gandolfo, M.A.3
  • 10
    • 0034255126 scopus 로고    scopus 로고
    • Comparing sequenced segments of the tomato and Arabidopsis genomes: Large-scale duplication followed by selective gene loss creates a network of synteny
    • 10.1073/pnas.160271297, 16832, 10908680
    • Ku M-M, Vision T, Liu J, Tanksley SD. Comparing sequenced segments of the tomato and Arabidopsis genomes: Large-scale duplication followed by selective gene loss creates a network of synteny. Proc Natl Acad Sci USA 2000, 97:9121-9126. 10.1073/pnas.160271297, 16832, 10908680.
    • (2000) Proc Natl Acad Sci USA , vol.97 , pp. 9121-9126
    • Ku, M.-.M.1    Vision, T.2    Liu, J.3    Tanksley, S.D.4
  • 11
    • 0032954807 scopus 로고    scopus 로고
    • Rates of nucleotide substitution in angiosperm mitochondrial DNA sequences and dates of divergence between Brassica and other angiosperm lineages
    • 10.1007/PL00006502, 10198125
    • Yang YW, Lai KN, Tai PY, Li WH. Rates of nucleotide substitution in angiosperm mitochondrial DNA sequences and dates of divergence between Brassica and other angiosperm lineages. J Mol Evol 1999, 48:597-604. 10.1007/PL00006502, 10198125.
    • (1999) J Mol Evol , vol.48 , pp. 597-604
    • Yang, Y.W.1    Lai, K.N.2    Tai, P.Y.3    Li, W.H.4
  • 12
    • 34547756887 scopus 로고    scopus 로고
    • Fine mapping and targeted SNP survey using rice-wheat gene colinearity in the region of the Bo1 boron toxicity tolerance locus of bread wheat
    • 10.1007/s00122-007-0579-0, 17571251
    • Schnurbusch T, Collins NC, Eastwood RF, Sutton T, Jefferies SP, Langridge P. Fine mapping and targeted SNP survey using rice-wheat gene colinearity in the region of the Bo1 boron toxicity tolerance locus of bread wheat. Theor Appl Genet 2007, 115:451-461. 10.1007/s00122-007-0579-0, 17571251.
    • (2007) Theor Appl Genet , vol.115 , pp. 451-461
    • Schnurbusch, T.1    Collins, N.C.2    Eastwood, R.F.3    Sutton, T.4    Jefferies, S.P.5    Langridge, P.6
  • 14
    • 33644515305 scopus 로고    scopus 로고
    • Macro- and micro-colinearity between the genomic region of wheat chromosome 5B containing the Tsn1 gene and the rice genome
    • 10.1007/s10142-005-0020-1, 16372189
    • Lu HJ, Faris JD. Macro- and micro-colinearity between the genomic region of wheat chromosome 5B containing the Tsn1 gene and the rice genome. Funct Integr Genomics 2006, 6:90-103. 10.1007/s10142-005-0020-1, 16372189.
    • (2006) Funct Integr Genomics , vol.6 , pp. 90-103
    • Lu, H.J.1    Faris, J.D.2
  • 17
    • 5144234363 scopus 로고    scopus 로고
    • Close split of sorghum and maize genome progenitors
    • 10.1101/gr.2332504, 524415, 15466289
    • Swigonova Z, Lai J, Ma J, Ramakrishna W, Llaca V, Bennetzen, Messing J. Close split of sorghum and maize genome progenitors. Genome Res 2004, 14:1916-1923. 10.1101/gr.2332504, 524415, 15466289.
    • (2004) Genome Res , vol.14 , pp. 1916-1923
    • Swigonova, Z.1    Lai, J.2    Ma, J.3    Ramakrishna, W.4    Llaca, V.5    Bennetzen6    Messing, J.7
  • 19
    • 3042836334 scopus 로고    scopus 로고
    • Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics
    • 10.1073/pnas.0307901101, 470771, 15161969
    • Paterson AH, Bowers JE, Chapman BA. Ancient polyploidization predating divergence of the cereals, and its consequences for comparative genomics. Proc Natl Acad Sci USA 2004, 101:9903-9908. 10.1073/pnas.0307901101, 470771, 15161969.
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 9903-9908
    • Paterson, A.H.1    Bowers, J.E.2    Chapman, B.A.3
  • 20
  • 21
    • 25144446148 scopus 로고    scopus 로고
    • Evolutionary rate analysis of Leguminosae implicates a rapid diversification of lineages during the tertiary
    • 10.1080/10635150590947131, 16085576
    • Lavin M, Herendeen PS, Wojjciechowski MF. Evolutionary rate analysis of Leguminosae implicates a rapid diversification of lineages during the tertiary. Syst Biol 2005, 54:575-594. 10.1080/10635150590947131, 16085576.
    • (2005) Syst Biol , vol.54 , pp. 575-594
    • Lavin, M.1    Herendeen, P.S.2    Wojjciechowski, M.F.3
  • 22
    • 63449136381 scopus 로고    scopus 로고
    • Relationships among phaseoloid legumes based on sequences from eight chloroplast regions
    • Stefanović S, Pfeil BE, Palmer JD, Doyle JJ. Relationships among phaseoloid legumes based on sequences from eight chloroplast regions. Systematic Botany 2009, 34:115-128.
    • (2009) Systematic Botany , vol.34 , pp. 115-128
    • Stefanović, S.1    Pfeil, B.E.2    Palmer, J.D.3    Doyle, J.J.4
  • 25
    • 2442712340 scopus 로고    scopus 로고
    • Mining the EST databases to determine evolutionary events in the legumes and grasses
    • 10.1139/g04-047, 15499401
    • Schlueter JA, Dixon P, granger C, Grant D, Clark L, Doyle JJ, Shoemaker RC. Mining the EST databases to determine evolutionary events in the legumes and grasses. Genome 2004, 47:868-876. 10.1139/g04-047, 15499401.
    • (2004) Genome , vol.47 , pp. 868-876
    • Schlueter, J.A.1    Dixon, P.2    granger, C.3    Grant, D.4    Clark, L.5    Doyle, J.J.6    Shoemaker, R.C.7
  • 26
    • 33746387557 scopus 로고    scopus 로고
    • Testing the polyploidy past of soybean using a low-copy nuclear gene - Is Glycine (Fabaceae: Papilionoideae) an auto- or allopolyploid?
    • Straub SCK, Pfeil BE, Doyle JJ. Testing the polyploidy past of soybean using a low-copy nuclear gene - Is Glycine (Fabaceae: Papilionoideae) an auto- or allopolyploid?. Mol Phyol Evol 2006, 39:580-584.
    • (2006) Mol Phyol Evol , vol.39 , pp. 580-584
    • Straub, S.C.K.1    Pfeil, B.E.2    Doyle, J.J.3
  • 28
    • 0029186336 scopus 로고
    • Genome conservation among three legume genera detected with DNA markers
    • 10.1139/g95-122, 18470218
    • Boutin SR, Young ND, Olson TC, Yu ZH, Vallejos CE, Shoemaker RC. Genome conservation among three legume genera detected with DNA markers. Genome 1995, 38:928-937. 10.1139/g95-122, 18470218.
    • (1995) Genome , vol.38 , pp. 928-937
    • Boutin, S.R.1    Young, N.D.2    Olson, T.C.3    Yu, Z.H.4    Vallejos, C.E.5    Shoemaker, R.C.6
  • 29
    • 0034772943 scopus 로고    scopus 로고
    • Genome organization in dicots. II. Arabidopsis as a 'bridging species' to resolve evolution events among legumes
    • Lee JM, Grant D, Vallejos CE, Shoemaker RC. Genome organization in dicots. II. Arabidopsis as a 'bridging species' to resolve evolution events among legumes. Theor Appl Genet 2001, 103:765-773.
    • (2001) Theor Appl Genet , vol.103 , pp. 765-773
    • Lee, J.M.1    Grant, D.2    Vallejos, C.E.3    Shoemaker, R.C.4
  • 30
    • 1842865865 scopus 로고    scopus 로고
    • Identification of putative genes in bean Phaseolus vulgaris) genomic (Bng) RFLP clones and their conversion to STSs
    • 10.1139/g02-069, 12502245
    • Murray J, Larsen J, Michaels TE, Schaafsma A, Vallejos CE, Pauls KP. Identification of putative genes in bean Phaseolus vulgaris) genomic (Bng) RFLP clones and their conversion to STSs. Genome 2002, 45:1013-1024. 10.1139/g02-069, 12502245.
    • (2002) Genome , vol.45 , pp. 1013-1024
    • Murray, J.1    Larsen, J.2    Michaels, T.E.3    Schaafsma, A.4    Vallejos, C.E.5    Pauls, K.P.6
  • 31
    • 0026767217 scopus 로고
    • A molecular marker-based linkage map of Phaseolus vulgaris L
    • 1205043, 1352759
    • Vallejos CE, Sakiyama NS, Chase CD. A molecular marker-based linkage map of Phaseolus vulgaris L. Genetics 1992, 131:733-740. 1205043, 1352759.
    • (1992) Genetics , vol.131 , pp. 733-740
    • Vallejos, C.E.1    Sakiyama, N.S.2    Chase, C.D.3
  • 35
    • 0035054094 scopus 로고    scopus 로고
    • QTL conditioning physiological resistance and avoidance to white mold in dry bean
    • Miklas PM, Johnson WC, Delorme R, Gepts P. QTL conditioning physiological resistance and avoidance to white mold in dry bean. Crop Sci 2001, 41:309-315.
    • (2001) Crop Sci , vol.41 , pp. 309-315
    • Miklas, P.M.1    Johnson, W.C.2    Delorme, R.3    Gepts, P.4
  • 36
    • 0027238885 scopus 로고
    • Towards an integrated linkage map of common bean. III. Mapping genetic factors controlling host-bacteria interactions
    • 1205436, 8514141
    • Nodari RO, Tsai SM, Guzman P, Gilbertson RL, Gepts P. Towards an integrated linkage map of common bean. III. Mapping genetic factors controlling host-bacteria interactions. Genetics 1993, 134:341-350. 1205436, 8514141.
    • (1993) Genetics , vol.134 , pp. 341-350
    • Nodari, R.O.1    Tsai, S.M.2    Guzman, P.3    Gilbertson, R.L.4    Gepts, P.5
  • 37
    • 0034053725 scopus 로고    scopus 로고
    • A greedy algorithm for aligning DNA sequences
    • 10.1089/10665270050081478, 10890397
    • Zhang Z, Schwartz S, Wagner L, Miller W. A greedy algorithm for aligning DNA sequences. J Comput Biol 2000, 7:203-214. 10.1089/10665270050081478, 10890397.
    • (2000) J Comput Biol , vol.7 , pp. 203-214
    • Zhang, Z.1    Schwartz, S.2    Wagner, L.3    Miller, W.4
  • 38
    • 0032849859 scopus 로고    scopus 로고
    • CAP3: a DNA sequence assembly program
    • 10.1101/gr.9.9.868, 310812, 10508846
    • Huang X, Madan A. CAP3: a DNA sequence assembly program. Genome Res 1999, 9:868-877. 10.1101/gr.9.9.868, 310812, 10508846.
    • (1999) Genome Res , vol.9 , pp. 868-877
    • Huang, X.1    Madan, A.2
  • 39
    • 0346494835 scopus 로고    scopus 로고
    • The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants
    • 10.1093/nar/gkh099, 308833, 14681434
    • Ouyang S, Buell CR. The TIGR Plant Repeat Databases: a collective resource for the identification of repetitive sequences in plants. Nucleic Acids Res 2004, 32:D360-D363. 10.1093/nar/gkh099, 308833, 14681434.
    • (2004) Nucleic Acids Res , vol.32
    • Ouyang, S.1    Buell, C.R.2
  • 41
    • 2542503896 scopus 로고    scopus 로고
    • Sequence diversity analysis of dihydroflavonol 4-reductase intron 1 in common bean
    • McClean PE, Lee RK, Miklas PN. Sequence diversity analysis of dihydroflavonol 4-reductase intron 1 in common bean. Genome 2004, 47:266-280.
    • (2004) Genome , vol.47 , pp. 266-280
    • McClean, P.E.1    Lee, R.K.2    Miklas, P.N.3
  • 42
    • 0023426747 scopus 로고
    • MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations
    • 10.1016/0888-7543(87)90010-3, 3692487
    • Lander ES, Green P, Abrahamson J, Barlow A, Daly MJ, Lincoln SE, Newburg L. MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1987, 1:174-181. 10.1016/0888-7543(87)90010-3, 3692487.
    • (1987) Genomics , vol.1 , pp. 174-181
    • Lander, E.S.1    Green, P.2    Abrahamson, J.3    Barlow, A.4    Daly, M.J.5    Lincoln, S.E.6    Newburg, L.7


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.