Form and function remixed: Developmental physiology in the evolution of vertebrate body plans

Journal of Physiology

Volumn 592, Issue 11, 2014, Pages 2403-2412

  Newman, Stuart A ^a  

^a NEW YORK MEDICAL COLLEGE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ADAPTATION; AIRWAY; BIOPHYSICS; BIRD; CARDIOVASCULAR SYSTEM; DEVELOPMENT; DEVELOPMENTAL PHYSIOLOGY; DYNAMICS; ENVIRONMENT; EVOLUTION; GENETICS; HOMEOSTASIS; HUMAN; LIMB; MORPHOLOGY; MUSCULOSKELETAL SYSTEM; NATURAL SELECTION; NERVE CONDUCTION; NONHUMAN; PHYSIOLOGY; PRIORITY JOURNAL; REVIEW; SKELETON; SOMITE; THERMOGENESIS; VERTEBRATE; ANATOMY AND HISTOLOGY; ANIMAL; EMBRYO DEVELOPMENT; EMBRYOLOGY; GENE EXPRESSION REGULATION; MORPHOGENESIS;

ANIMALS; BIOLOGICAL EVOLUTION; BODY PATTERNING; EMBRYONIC DEVELOPMENT; GENE EXPRESSION REGULATION, DEVELOPMENTAL; VERTEBRATES;

EID: 84901494826     PISSN: 00223751     EISSN: 14697793     Source Type: Journal    
DOI: 10.1113/jphysiol.2014.271437     Document Type: Review

References (108)

1. Amundson R (2005). The Changing Role of the Embryo in Evolutionary Thought: Roots of Evo-Devo. Cambridge University Press, Cambridge New York, NY.
2. Arnal LH & Giraud AL (2012). Cortical oscillations and sensory predictions. Trends Cogn Sci 16, 390-398.
3. Bateson P (2014). New thinking about biological evolution. Biol J Linn Soc Lond (in press; doi: 10.1111/bij.12125).
4. Bateson W (1894). Materials for the Study of Sariation. Macmillan, London.
5. Bateson W & Bateson B (1928). William Bateson, F. R. S., Naturalist; His Essays & Addresses, Together with a Short Account of his Life. University Press, Cambridge.
6. Bhat R & Newman SA (2009). Snakes and ladders: the ups and downs of animal segmentation. J Biosci 34, 163-166.
7. Bonduriansky R & Day T (2013). Nongenetic inheritance and the evolution of costly female preference. J Evol Biol 26, 76-87.
8. Brusca RC & Brusca GJ (2003). Invertebrates. Sinauer Associates, Sunderland, MA.
9. Čapek D, Metscher BD & Müller GB (2014). Thumbs down: a molecular-morphogenetic approach to avian digit homology. J Exp Zoolog B Mol Dev Evol 322, 1-12.
10. Carroll SB, Grenier JK & Weatherbee SD (2004). From DNA to Diversity: Molecular Genetics and the Evolution of Animal Design. Blackwell Publishing, Malden, MA.
11. Castets V, Dulos E, Boissonade J & DeKepper P (1990). Experimental evidence of a sustained standing Turing-type nonequilibrium chemical pattern. Phys Rev Lett 64, 2953-2956.
12. Clavica F, Alastruey J, Sherwin SJ & Khir AW (2009). One-dimensional modelling of pulse wave propagation in human airway bifurcations in space-time variables. Conf Proc IEEE Eng Med Biol Soc 2009, 5482-5485.
13. Cobb M (2013). 1953: when genes became 'information'. Cell 153, 503-506.
14. Conway Morris S (2006). Darwin's dilemma: the realities of the Cambrian 'explosion'. Philos Trans R Soc Lond B Biol Sci 361, 1069-1083.
15. Cooke J & Zeeman EC (1976). A clock and wavefront model for control of the number of repeated structures during animal morphogenesis. J Theor Biol 58, 455-476.
16. Darwin C (1868). The Variation of Animals and Plants under Domestication. J. Murray, London.
17. de Gennes PG (1992). Soft matter. Science 256, 495-497.
18. Dias AS, de Almeida I, Belmonte JM, Glazier JA & Stern CD (2014). Somites without a clock. Science 343, 791-795.
19. Dias BG & Ressler KJ (2014). Parental olfactory experience influences behavior and neural structure in subsequent generations. Nat Neurosci 17, 89-96.
20. Dolan B (2004). Wedgwood: the First Tycoon. Viking, New York, NY.
21. Eldredge N & Gould SJ (1972). Punctuated equilibria: an alternative to phyletic gradualism. In Models in Paleobiology, ed. Schopf TJM, pp. 82-115. Freeman, Cooper & Co., San Francisco, CA.
22. Fisher RA (1930). The Genetical Theory of Natural Selection. Clarendon Press, Oxford.
23. Forgacs G & Newman SA (2005). Biological Physics of the Developing Embryo. Cambridge University Press, Cambridge.
24. Fowler JA (1970). Control of vertebral number in teleosts - an embryological problem. Q Rev Biol 45, 148-164.
25. Gatesy S & Dial K (1996). Locomotor modules and the evolution of avian flight. Evolution 50, 331-340.
26. Gierer A & Meinhardt H (1972). A theory of biological pattern formation. Kybernetik 12, 30-39.
27. Glimm T, Bhat R & Newman SA (2014). Modeling the morphodynamic galectin patterning network of the developing avian limb skeleton. J Theor Biol 346, 86-108.
28. Goldbeter A (1996). Biochemical Oscillations and Cellular Rhythms: the Molecular Bases of Periodic and Chaotic Behaviour. Cambridge University Press, Cambridge.
29. Gómez C, Ǒzbudak EM, Wunderlich J, Baumann D, Lewis J & Pourquié O (2008). Control of segment number in vertebrate embryos. Nature 454, 335-339.
30. Goodwin BC (1963). Temporal Organization in Cells; a Dynamic Theory of Cellular Control Processes. Academic Press, London; New York, NY.
31. Goodwin BC (1994). How the Leopard Changed its Spots. Weidenfeld & Nicolson, London.
32. Gould SJ (2002). The Structure of Evolutionary Theory. Belknap Press of Harvard University Press, Cambridge, MA.
33. Gray J (2012). Henri Poincaré: a Scientific Biography. Princeton University Press, Princeton, NJ.
34. Grigg GC, Beard LA & Augee ML (2004). The evolution of endothermy and its diversity in mammals and birds. Physiol Biochem Zool 77, 982-997.
35. Grossberg S (1976). On the development of feature detectors in the visual cortex with applications to learning and reaction-diffusion systems. Biol Cybern 21, 145-159.
36. Guevara MR, Glass L & Shrier A (1981). Phase locking, period-doubling bifurcations, and irregular dynamics in periodically stimulated cardiac cells. Science 214, 1350-1353.
37. Hall BK (2001). Development of the clavicles in birds and mammals. J Exp Zool 289, 153-161.
38. Hall BK & Herring SW (1990). Paralysis and growth of the musculoskeletal system in the embryonic chick. J Morphol 206, 45-56.
39. Hentschel HG, Glimm T, Glazier JA & Newman SA (2004). Dynamical mechanisms for skeletal pattern formation in the vertebrate limb. Proc R Soc Lond B Biol Sci 271, 1713-1722.
40. Hodgkin AL & Huxley AF (1952). A quantitative description of membrane current and its application to conduction and excitation in nerve. J Physiol 117, 500-544.
41. Holden AV (1990). Some mathematical problems of excitability. Biomed Biochim Acta 49, 651-660.
42. Houssaye A, Boistel R, Bohme W & Herrel A (2013). Jack-of-all-trades master of all? Snake vertebrae have a generalist inner organization. Naturwissenschaften 100, 997-1006.
43. Jablonka E & Raz G (2009). Transgenerational epigenetic inheritance: prevalence, mechanisms, and implications for the study of heredity and evolution. Q Rev Biol 84, 131-176.
44. Kaiser GW (2007). The Inner Bird: Anatomy and Evolution. UBC Press, Vancouver, BC.
45. Kolmogorov A, Petrovsky L & Piskunov N (1937). An investigation of the diffusion equation combined with an increase in mass and its application to a biological problem. Bull Uni Moscow Ser Int A1 6, 1-26.
46. Lange A, Nemeschkal HL & Müller GB (2014). Biased polyphenism in polydactylous cats carrying a single point mutation: the Hemingway model for digit novelty. J Exp Zoolog B Mol Dev Evol (in press).
47. Lewontin RC (1983). Gene, organism and environment. In Evolution from Molecules to Men, ed. Bendall D, pp. 273-285. Cambridge University Press, Cambridge.
48. Marco LA & Nastuk WL (1968). Sarcomeric oscillations in frog skeletal muscle fibers. Science 161, 1357-1358.
49. Martinez HM (1972). Morphogenesis and chemical dissipative structures. A computer simulated case study. J Theor Biol 36, 479-501.
50. Marx H & Rabb GB (1972). Phyletic analysis of fifty characters of advanced snakes. Fieldiana Zool 63, 1-321.
51. Mayr E (1982). The Growth of Biological Thought: Diversity, Evolution, and Inheritance. Belknap Press, Cambridge, MA.
52. McLaren A & Michie D (1958). An effect of the uterine environment upon skeletal morphology in the mouse. Nature 181, 1147-1148.
53. Meinhardt H (1982). Models of Biological Pattern Formation. Academic Press, New York, NY.
54. Mezentseva NV, Kumaratilake JS & Newman SA (2008). The brown adipocyte differentiation pathway in birds: an evolutionary road not taken. BMC Biol 6, 17.
55. Minelli A & Fusco G (2004). Evo-devo perspectives on segmentation: model organisms, and beyond. Trends Ecol Evol 19, 423-429.
56. Minorsky N (1962). Nonlinear Oscillations. Van Nostrand, Princeton, NJ.
57. Miura T, Shiota K, Morriss-Kay G & Maini PK (2006). Mixed-mode pattern in Doublefoot mutant mouse limb - Turing reaction-diffusion model on a growing domain during limb development. J Theor Biol 240, 562-573.
58. Müller GB (1990). Developmental mechanisms at the origin of morphological novelty: a side-effect hypothesis. In Evolutionary Innovations, ed. Nitecki M, pp. 99-130. University of Chicago Press, Chicago, IL.
59. Müller GB (2007). Evo-devo: extending the evolutionary synthesis. Nat Rev Genet 8, 943-949.
60. Müller GB & Streicher J (1989). Ontogeny of the syndesmosis tibiofibularis and the evolution of the bird hindlimb: a caenogenetic feature triggers phenotypic novelty. Anat Embryol 179, 327-339.
61. Newman SA (1993). Is segmentation generic? BioEssays 15, 277-283.
62. Newman SA (1994). Generic physical mechanisms of tissue morphogenesis: a common basis for development and evolution. J Evol Biol 7, 467-488.
63. Newman SA (2005). The pre-Mendelian, pre-Darwinian world: shifting relations between genetic and epigenetic mechanisms in early multicellular evolution. J Biosci 30, 75-85.
64. Newman SA (2006). The developmental-genetic toolkit and the molecular homology-analogy paradox. Biol Theory 1, 12-16.
65. Newman SA (2011). Thermogenesis, muscle hyperplasia, and the origin of birds. Bioessays 33, 653-656.
66. Newman SA & Comper WD (1990). 'Generic' physical mechanisms of morphogenesis and pattern formation. Development 110, 1-18.
67. Newman SA, Forgacs G & Müller GB (2006). Before programs: the physical origination of multicellular forms. Int J Dev Biol 50, 289-299.
68. Newman SA & Frisch HL (1979). Dynamics of skeletal pattern formation in developing chick limb. Science 205, 662-668.
69. Newman SA & Linde-Medina M (2013). Physical determinants in the emergence and inheritance of multicellular form. Biol Theory 8, 274-285.
70. Newman SA, Mezentseva NV & Badyaev AV (2013). Gene loss, thermogenesis, and the origin of birds. Ann N Y Acad Sci 1289, 36-47.
71. Newman SA & Müller GB (2000). Epigenetic mechanisms of character origination. J Exp Zoolog B Mol Dev Evol 288, 304-317.
72. Nijhout HF (1990). Metaphors and the roles of genes in development. BioEssays 12, 441-446.
73. Noble D (2013). Physiology is rocking the foundations of evolutionary biology. Exp Physiol 98, 1235-1243.
74. Noble DW, Wechmann K, Keogh JS & Whiting MJ (2013). Behavioral and morphological traits interact to promote the evolution of alternative reproductive tactics in a lizard. Am Nat 182, 726-742.
75. Nowlan NC, Sharpe J, Roddy KA, Prendergast PJ & Murphy P (2010). Mechanobiology of embryonic skeletal development: insights from animal models. Birth Defects Res C Embryo Today 90, 203-213.
76. Osgood DW (1978). Effects of temperature on the development of meristic characters in Natrix fasciata. Copeia 1, 33-47.
77. Ostrowski MF, Jarne P, Berticat O & David P (2002). Ontogenetic reaction norm for binary traits: the timing of phallus development in the snail Bulinus truncatus. Heredity (Edinb) 88, 342-348.
78. Ouyang Q & Swinney H (1991). Transition from a uniform state to hexagonal and striped Turing patterns. Nature 352, 610-612.
79. Palmeirim I, Henrique D, Ish-Horowicz D & Pourquié O (1997). Avian hairy gene expression identifies a molecular clock linked to vertebrate segmentation and somitogenesis. Cell 91, 639-648.
80. Potse M, Coronel R, Opthof T & Vinet A (2007). Simulating T-wave parameters of local extracellular electrograms with a whole-heart bidomain reaction-diffusion model: size matters! Conf Proc IEEE Eng Med Biol Soc 2007, 6644-6647.
81. Prigogine I (1969). Structure, dissipation and life. In Theoretical Physics and Biology, ed. Marios M, pp. 23-52. North Holland Publishing, Amsterdam.
82. Rashevsky N (1948). Mathematical Biophysics. University of Chicago Press, Chicago, IL.
83. Sager BM (1996). Propagation of traveling waves in excitable media. Genes Dev 10, 2237-2250.
84. Salazar-Ciudad I, Newman SA & Solé RV (2001a). Phenotypic and dynamical transitions in model genetic networks. I. Emergence of patterns and genotype-phenotype relationships. Evol Dev 3, 84-94.
85. Salazar-Ciudad I, Solé RV & Newman SA (2001b). Phenotypic and dynamical transitions in model genetic networks. II. Application to the evolution of segmentation mechanisms. Evol Dev 3, 95-103.
86. Schmalhausen II (1949). Factors of Evolution. Blakiston, Philadelphia, PA.
87. Sheth R, Marcon L, Bastida MF, Junco M, Quintana L, Dahn R, Kmita M, Sharpe J & Ros MA (2012). Hox genes regulate digit patterning by controlling the wavelength of a Turing-type mechanism. Science 338, 1476-1480.
88. Shiferaw Y & Karma A (2006). Turing instability mediated by voltage and calcium diffusion in paced cardiac cells. Proc Natl Acad Sci U S A 103, 5670-5675.
89. Steinberg BE, Glass L, Shrier A & Bub G (2006). The role of heterogeneities and intercellular coupling in wave propagation in cardiac tissue. Philos Trans A Math Phys Eng Sci 364, 1299-1311.
90. Steinberg MS (1978). Specific cell ligands and the differential adhesion hypothesis: how do they fit together? In Specificity of Embryological Interactions, ed. Garrod DR, pp. 97-130. Chapman & Hall, London.
91. Summerbell D, Lewis JH & Wolpert L (1973). Positional information in chick limb morphogenesis. Nature 244, 492-496.
92. Tickle C, Summerbell D & Wolpert L (1975). Positional signalling and specification of digits in chick limb morphogenesis. Nature 254, 199-202.
93. Traub RD & Bibbig A (2000). A model of high-frequency ripples in the hippocampus based on synaptic coupling plus axon-axon gap junctions between pyramidal neurons. J Neurosci 20, 2086-2093.
94. Turing AM (1952). The chemical basis of morphogenesis. Philos Trans R Soc Lond B Biol Sci 237, 37-72.
95. van der Pol B (1927). On relaxation-oscillations. Philos Mag J Sci 2, 978-992.
96. Vonk FJ & Richardson MK (2008). Developmental biology: serpent clocks tick faster. Nature 454, 282-283.
97. Waddington CH (1942). Canalization of development and the inheritance of acquired characters. Nature 150, 563-565.
98. Waddington CH (1957). The Strategy of the Genes. Allen & Unwin, London.
99. Weber F (2009). Remodeling the clock: coactivators and signal transduction in the circadian clockworks. Naturwissenschaften 96, 321-337.
100. West-Eberhard MJ (2003). Developmental Plasticity and Evolution. Oxford University Press, Oxford; New York, NY.
101. Willmer P (1990). Invertebrate Relationships. Cambridge University Press, Cambridge.
102. Winfree AT (1974). Suppressing drosophila circadian rhythm with dim light. Science 183, 970-972.
103. Winfree AT (1980). The Geometry of Biological Time. Springer-Verlag, New York, NY.
104. Winfree AT, Winfree EM & Seifert H (1985). Organizing centers in cellular excitable media. Physica 17D, 109-115.
105. Wolpert L (1969). Positional information and the spatial pattern of cellular differentiation. J Theoret Biol 25, 1-47.
106. Wu J, Bostrom P, Sparks LM, Ye L, Choi JH, Giang AH, Khandekar M, Virtanen KA, Nuutila P, Schaart G, Huang K, Tu H, van Marken Lichtenbelt WD, Hoeks J, Enerback S, Schrauwen P & Spiegelman BM (2012). Beige adipocytes are a distinct type of thermogenic fat cell in mouse and human. Cell 150, 366-376.
107. Zhu J, Zhang YT, Alber MS & Newman SA (2010). Bare bones pattern formation: a core regulatory network in varying geometries reproduces major features of vertebrate limb development and evolution. PLoS One 5, e10892.
108. Zucker SW (2012). Local field potentials and border ownership: a conjecture about computation in visual cortex. J Physiol Paris 106, 297-315.