메뉴 건너뛰기




Volumn 21, Issue 5, 2014, Pages 591-595

Validating fragment-based drug discovery for biological RNAs: Lead fragments bind and remodel the TPP riboswitch specifically

Author keywords

[No Author keywords available]

Indexed keywords

COCARBOXYLASE; THIAMINE; LIGAND; RIBOSWITCH; RNA;

EID: 84901406647     PISSN: 10745521     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.chembiol.2014.03.007     Document Type: Article
Times cited : (76)

References (24)
  • 1
    • 1542498400 scopus 로고    scopus 로고
    • Anion binding to nucleic acids
    • DOI 10.1016/j.str.2004.02.015, PII S0969212604000577
    • P. Auffinger, L. Bielecki, and E. Westhof Anion binding to nucleic acids Structure 12 2004 379 388 (Pubitemid 38353059)
    • (2004) Structure , vol.12 , Issue.3 , pp. 379-388
    • Auffinger, P.1    Bielecki, L.2    Westhof, E.3
  • 2
    • 77149165421 scopus 로고    scopus 로고
    • Idiosyncratically tuned switching behavior of riboswitch aptamer domains revealed by comparative small-angle X-ray scattering analysis
    • N.J. Baird, and A.R. Ferré-D'Amaré Idiosyncratically tuned switching behavior of riboswitch aptamer domains revealed by comparative small-angle X-ray scattering analysis RNA 16 2010 598 609
    • (2010) RNA , vol.16 , pp. 598-609
    • Baird, N.J.1    Ferré-D'Amaré, A.R.2
  • 6
    • 79953174439 scopus 로고    scopus 로고
    • Fragment screening against the thiamine pyrophosphate riboswitch thiM
    • E. Cressina, L. Chen, C. Abell, F.J. Leeper, and A.G. Smith Fragment screening against the thiamine pyrophosphate riboswitch thiM Chem. Sci. 2 2010 157 165
    • (2010) Chem. Sci. , vol.2 , pp. 157-165
    • Cressina, E.1    Chen, L.2    Abell, C.3    Leeper, F.J.4    Smith, A.G.5
  • 7
    • 80053041142 scopus 로고    scopus 로고
    • Riboswitches: Discovery of drugs that target bacterial gene-regulatory RNAs
    • K.E. Deigan, and A.R. Ferré-D'Amaré Riboswitches: discovery of drugs that target bacterial gene-regulatory RNAs Acc. Chem. Res. 44 2011 1329 1338
    • (2011) Acc. Chem. Res. , vol.44 , pp. 1329-1338
    • Deigan, K.E.1    Ferré-D'Amaré, A.R.2
  • 8
    • 33748300801 scopus 로고    scopus 로고
    • Crystal Structures of the Thi-Box Riboswitch Bound to Thiamine Pyrophosphate Analogs Reveal Adaptive RNA-Small Molecule Recognition
    • DOI 10.1016/j.str.2006.07.008, PII S0969212606003303
    • T.E. Edwards, and A.R. Ferré-D'Amaré Crystal structures of the thi-box riboswitch bound to thiamine pyrophosphate analogs reveal adaptive RNA-small molecule recognition Structure 14 2006 1459 1468 (Pubitemid 44331619)
    • (2006) Structure , vol.14 , Issue.9 , pp. 1459-1468
    • Edwards, T.E.1    Ferre-D'Amare, A.R.2
  • 9
    • 84889120137 scopus 로고
    • Improved methods for building protein models in electron density maps and the location of errors in these models
    • T.A. Jones, J.Y. Zou, S.W. Cowan, and M. Kjeldgaard Improved methods for building protein models in electron density maps and the location of errors in these models Acta Crystallogr. A 47 1991 110 119
    • (1991) Acta Crystallogr. A , vol.47 , pp. 110-119
    • Jones, T.A.1    Zou, J.Y.2    Cowan, S.W.3    Kjeldgaard, M.4
  • 10
    • 34548591567 scopus 로고    scopus 로고
    • Requirement of Helix P2.2 and Nucleotide G1 for Positioning the Cleavage Site and Cofactor of the glmS Ribozyme
    • DOI 10.1016/j.jmb.2007.07.062, PII S0022283607010285
    • D.J. Klein, S.R. Wilkinson, M.D. Been, and A.R. Ferré- D'Amaré Requirement of helix P2.2 and nucleotide G1 for positioning the cleavage site and cofactor of the glmS ribozyme J. Mol. Biol. 373 2007 178 189 (Pubitemid 47390720)
    • (2007) Journal of Molecular Biology , vol.373 , Issue.1 , pp. 178-189
    • Klein, D.J.1    Wilkinson, S.R.2    Been, M.D.3    Ferre-D'Amare, A.R.4
  • 12
    • 75649088957 scopus 로고    scopus 로고
    • Thermodynamic analysis of ligand binding and ligand binding-induced tertiary structure formation by the thiamine pyrophosphate riboswitch
    • N. Kulshina, T.E. Edwards, and A.R. Ferré-D'Amaré Thermodynamic analysis of ligand binding and ligand binding-induced tertiary structure formation by the thiamine pyrophosphate riboswitch RNA 16 2010 186 196
    • (2010) RNA , vol.16 , pp. 186-196
    • Kulshina, N.1    Edwards, T.E.2    Ferré-D'Amaré, A.R.3
  • 16
    • 0031059866 scopus 로고    scopus 로고
    • Processing of X-ray diffraction data collected in oscillation mode
    • DOI 10.1016/S0076-6879(97)76066-X
    • Z. Otwinowski, and W. Minor Processing of X-ray diffraction data collected in oscillation mode Methods Enzymol. 276 1997 307 326 (Pubitemid 27085611)
    • (1997) Methods in Enzymology , vol.276 , pp. 307-326
    • Otwinowski, Z.1    Minor, W.2
  • 17
    • 67650713931 scopus 로고    scopus 로고
    • The structural and functional diversity of metabolite-binding riboswitches
    • A. Roth, and R.R. Breaker The structural and functional diversity of metabolite-binding riboswitches Annu. Rev. Biochem. 78 2009 305 334
    • (2009) Annu. Rev. Biochem. , vol.78 , pp. 305-334
    • Roth, A.1    Breaker, R.R.2
  • 20
    • 84862869077 scopus 로고    scopus 로고
    • Fragment-based approaches in drug discovery and chemical biology
    • D.E. Scott, A.G. Coyne, S.A. Hudson, and C. Abell Fragment-based approaches in drug discovery and chemical biology Biochemistry 51 2012 4990 5003
    • (2012) Biochemistry , vol.51 , pp. 4990-5003
    • Scott, D.E.1    Coyne, A.G.2    Hudson, S.A.3    Abell, C.4
  • 21
    • 33745635350 scopus 로고    scopus 로고
    • Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch
    • DOI 10.1038/nature04740, PII N04740
    • A. Serganov, A. Polonskaia, A.T. Phan, R.R. Breaker, and D.J. Patel Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch Nature 441 2006 1167 1171 (Pubitemid 43990739)
    • (2006) Nature , vol.441 , Issue.7097 , pp. 1167-1171
    • Serganov, A.1    Polonskaia, A.2    Phan, A.T.3    Breaker, R.R.4    Patel, D.J.5
  • 22
    • 77955834766 scopus 로고    scopus 로고
    • Selective 2′-hydroxyl acylation analyzed by protection from exoribonuclease
    • K.-A. Steen, A. Malhotra, and K.M. Weeks Selective 2′-hydroxyl acylation analyzed by protection from exoribonuclease J. Am. Chem. Soc. 132 2010 9940 9943
    • (2010) J. Am. Chem. Soc. , vol.132 , pp. 9940-9943
    • Steen, K.-A.1    Malhotra, A.2    Weeks, K.M.3
  • 23
    • 33744469562 scopus 로고    scopus 로고
    • Structure of the eukaryotic thiamine pyrophosphate riboswitch with its regulatory ligand
    • DOI 10.1126/science.1128451
    • S. Thore, M. Leibundgut, and N. Ban Structure of the eukaryotic thiamine pyrophosphate riboswitch with its regulatory ligand Science 312 2006 1208 1211 (Pubitemid 43801145)
    • (2006) Science , vol.312 , Issue.5777 , pp. 1208-1211
    • Thore, S.1    Leibundgut, M.2    Ban, N.3
  • 24
    • 33947720028 scopus 로고    scopus 로고
    • Selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE): Quantitative RNA structure analysis at single nucleotide resolution
    • K.A. Wilkinson, E.J. Merino, and K.M. Weeks Selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution Nat. Protoc. 1 2006 1610 1616
    • (2006) Nat. Protoc. , vol.1 , pp. 1610-1616
    • Wilkinson, K.A.1    Merino, E.J.2    Weeks, K.M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.