-
1
-
-
84859204939
-
The intact molecular interaction database in 2012
-
Kerrien S, Aranda B, Breuza L, Bridge A, Broackes-Carter F, Chen C, Duesbury M, Dumousseau M, Feuermann M, Hinz U, Jandrasits C, Jimenez RC, Khadake J, Mahadevan U, Masson P, Pedruzzi I, Pfeiffenberger E, Porras P, Raghunath A, Roechert B, Orchard S, Hermjakob H. The intact molecular interaction database in 2012. Nucleic Acids Res 2012, 40(D1):841-846.
-
(2012)
Nucleic Acids Res
, vol.40
, Issue.D1
, pp. 841-846
-
-
Kerrien, S.1
Aranda, B.2
Breuza, L.3
Bridge, A.4
Broackes-Carter, F.5
Chen, C.6
Duesbury, M.7
Dumousseau, M.8
Feuermann, M.9
Hinz, U.10
Jandrasits, C.11
Jimenez, R.C.12
Khadake, J.13
Mahadevan, U.14
Masson, P.15
Pedruzzi, I.16
Pfeiffenberger, E.17
Porras, P.18
Raghunath, A.19
Roechert, B.20
Orchard, S.21
Hermjakob, H.22
more..
-
2
-
-
84871227507
-
Cytoscape: An Open Source Platform for Complex Network Analysis and Visualization
-
Cytoscape: An Open Source Platform for Complex Network Analysis and Visualization. [http://www.cytoscape.org].
-
-
-
-
3
-
-
0242490780
-
Cytoscape: A software environment for integrated models of biomolecular interaction networks
-
10.1101/gr.1239303, 403769, 14597658
-
Shannon P, Markiel A, Ozier O, Baliga NS, Wang JT, Ramage D, Amin N, Schwikowski B, Ideker T. Cytoscape: A software environment for integrated models of biomolecular interaction networks. Genome Res 2003, 13(11):2498-2504. 10.1101/gr.1239303, 403769, 14597658.
-
(2003)
Genome Res
, vol.13
, Issue.11
, pp. 2498-2504
-
-
Shannon, P.1
Markiel, A.2
Ozier, O.3
Baliga, N.S.4
Wang, J.T.5
Ramage, D.6
Amin, N.7
Schwikowski, B.8
Ideker, T.9
-
4
-
-
84887107917
-
NetworkX
-
NetworkX. [http://networkx.github.io/].
-
-
-
-
5
-
-
84901452553
-
NAViGaTOR - Network Analysis, Visualization, & Graphing TORonto
-
NAViGaTOR - Network Analysis, Visualization, & Graphing TORonto. [http://ophid.utoronto.ca/navigator/].
-
-
-
-
6
-
-
75249086155
-
Navigator: Network analysis, visualization and graphing toronto
-
10.1093/bioinformatics/btp595, 2788933, 19837718, Toch ILv
-
Brown KR, Otasek D, Ali M, McGuffin MJ, Xie W, Devani B, Jurisica I, . Toch ILv Navigator: Network analysis, visualization and graphing toronto. Bioinformatics 2009, 25(24):3327-3329. 10.1093/bioinformatics/btp595, 2788933, 19837718, Toch ILv.
-
(2009)
Bioinformatics
, vol.25
, Issue.24
, pp. 3327-3329
-
-
Brown, K.R.1
Otasek, D.2
Ali, M.3
McGuffin, M.J.4
Xie, W.5
Devani, B.6
Jurisica, I.7
-
7
-
-
35748962289
-
Tools for visually exploring biological networks
-
10.1093/bioinformatics/btm401, 17720984
-
Suderman M, Hallett M. Tools for visually exploring biological networks. Bioinformatics 2007, 23(20):2651-2659. 10.1093/bioinformatics/btm401, 17720984.
-
(2007)
Bioinformatics
, vol.23
, Issue.20
, pp. 2651-2659
-
-
Suderman, M.1
Hallett, M.2
-
8
-
-
65449162644
-
A survey of visualization tools for biological network analysis
-
10.1186/1756-0381-1-12, 2636684, 19040716
-
Pavlopoulos G, Wegener A-L, Schneider R. A survey of visualization tools for biological network analysis. BioData Mining 2008, 1(1):12. 10.1186/1756-0381-1-12, 2636684, 19040716.
-
(2008)
BioData Mining
, vol.1
, Issue.1
, pp. 12
-
-
Pavlopoulos, G.1
Wegener, A.-L.2
Schneider, R.3
-
9
-
-
77649252269
-
Visualization of omics data for systems biology
-
10.1038/nmeth.1436, 20195258
-
Gehlenborg N, O'Donoghue SI, Baliga NS, Goesmann A, Hibbs MA, Kitano H, Kohlbacher O, Neuweger H, Schneider R, Tenenbaum D, Gavin A-C. Visualization of omics data for systems biology. Nat Methods 2010, 7:S56-S68. 10.1038/nmeth.1436, 20195258.
-
(2010)
Nat Methods
, vol.7
-
-
Gehlenborg, N.1
O'Donoghue, S.I.2
Baliga, N.S.3
Goesmann, A.4
Hibbs, M.A.5
Kitano, H.6
Kohlbacher, O.7
Neuweger, H.8
Schneider, R.9
Tenenbaum, D.10
Gavin, A.-C.11
-
10
-
-
84872421580
-
Visualization of protein interaction networks: problems and solutions
-
3575288, 23323762
-
Agapito G, Guzzi P, Cannataro M. Visualization of protein interaction networks: problems and solutions. BMC Bioinformatics 2013, 14(Suppl 1):1. 3575288, 23323762.
-
(2013)
BMC Bioinformatics
, vol.14
, Issue.SUPPL. 1
, pp. 1
-
-
Agapito, G.1
Guzzi, P.2
Cannataro, M.3
-
11
-
-
84876252208
-
Biojs: An open source javascript framework for biological data visualization
-
10.1093/bioinformatics/btt100, 3624812, 23435069
-
Gómez J, García LJ, Salazar GA, Villaveces J, Gore S, García A, Martín MJ, Launay G, Alcántara R, Ayllón NDT, Dumousseau M, Orchard S, Velankar S, Hermjakob H, Zong C, Ping P, Corpas M, Jiménez RC. Biojs: An open source javascript framework for biological data visualization. Bioinformatics 2013, 29(8):1103-1104. 10.1093/bioinformatics/btt100, 3624812, 23435069.
-
(2013)
Bioinformatics
, vol.29
, Issue.8
, pp. 1103-1104
-
-
Gómez, J.1
García, L.J.2
Salazar, G.A.3
Villaveces, J.4
Gore, S.5
García, A.6
Martín, M.J.7
Launay, G.8
Alcántara, R.9
Ayllón, N.D.T.10
Dumousseau, M.11
Orchard, S.12
Velankar, S.13
Hermjakob, H.14
Zong, C.15
Ping, P.16
Corpas, M.17
Jiménez, R.C.18
-
12
-
-
84901462798
-
Ppi layouts: Biojs components for the display of protein-protein interactions
-
3-50. [v1; ref status: indexed]
-
Salazar GA, Meintjes A, Mulder N. Ppi layouts: Biojs components for the display of protein-protein interactions. F1000Research 2014,, 3-50. [v1; ref status: indexed], [http://f1000r.es/2u5].
-
(2014)
F1000Research
-
-
Salazar, G.A.1
Meintjes, A.2
Mulder, N.3
-
14
-
-
84901454093
-
-
Birmingham, UK: PACKT Publishing
-
Kuć R. Apache Solr 4 Cookbook 2013, Birmingham, UK: PACKT Publishing.
-
(2013)
Apache Solr 4 Cookbook
-
-
Kuć, R.1
-
15
-
-
84876515907
-
String v9.1: protein-protein interaction networks, with increased coverage and integration
-
Franceschini A, Szklarczyk D, Frankild S, Kuhn M, Simonovic M, Roth A, Lin J, Minguez P, Bork P, von Mering C, Jensen LJ. String v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Res 2013, 41(D1):808-815.
-
(2013)
Nucleic Acids Res
, vol.41
, Issue.D1
, pp. 808-815
-
-
Franceschini, A.1
Szklarczyk, D.2
Frankild, S.3
Kuhn, M.4
Simonovic, M.5
Roth, A.6
Lin, J.7
Minguez, P.8
Bork, P.9
von Mering, C.10
Jensen, L.J.11
-
16
-
-
84901439877
-
Dynamic Link to Figure 2 in PINV
-
Dynamic Link to Figure 2 in PINV. [http://biosual.cbio.uct.ac.za/pinViewer.html?status=paper00].
-
-
-
-
17
-
-
84901390765
-
Dynamic Link to Figure 1 in PINV
-
Dynamic Link to Figure 1 in PINV. [http://biosual.cbio.uct.ac.za/pinViewer.html?status=paperF].
-
-
-
-
18
-
-
63549141868
-
A scalability study of web-native information visualization
-
Toronto, Ont., Canada, Canada: Canadian Information Processing Society
-
Johnson DW, Jankun-Kelly TJ. A scalability study of web-native information visualization. Proceedings of Graphics Interface 2008. GI '08 2008, 163-168. Toronto, Ont., Canada, Canada: Canadian Information Processing Society, [http://dl.acm.org/citation.cfm?id=1375714.1375743].
-
(2008)
Proceedings of Graphics Interface 2008. GI '08
, pp. 163-168
-
-
Johnson, D.W.1
Jankun-Kelly, T.J.2
-
19
-
-
74049130341
-
Graphle: Interactive exploration of large, dense graphs
-
10.1186/1471-2105-10-417, 2803856, 20003429
-
Huttenhower C, Mehmood S, Troyanskaya O. Graphle: Interactive exploration of large, dense graphs. BMC Bioinformatics 2009, 10(1):417. 10.1186/1471-2105-10-417, 2803856, 20003429.
-
(2009)
BMC Bioinformatics
, vol.10
, Issue.1
, pp. 417
-
-
Huttenhower, C.1
Mehmood, S.2
Troyanskaya, O.3
-
20
-
-
38549130733
-
Stitch: interaction networks of chemicals and proteins
-
Kuhn M, von Mering C, Campillos M, Jensen LJ, Bork P. Stitch: interaction networks of chemicals and proteins. Nucleic Acids Res 2008, 36(suppl 1):684-688.
-
(2008)
Nucleic Acids Res
, vol.36
, Issue.SUPPL. 1
, pp. 684-688
-
-
Kuhn, M.1
von Mering, C.2
Campillos, M.3
Jensen, L.J.4
Bork, P.5
-
21
-
-
84883576667
-
Visant 4.0: Integrative network platform to connect genes, drugs, diseases and therapies
-
Hu Z, Chang Y-C, Wang Y, Huang C-L, Liu Y, Tian F, Granger B, DeLisi C. Visant 4.0: Integrative network platform to connect genes, drugs, diseases and therapies. Nucleic Acids Res 2013, 41(W1):225-231.
-
(2013)
Nucleic Acids Res
, vol.41
, Issue.W1
, pp. 225-231
-
-
Hu, Z.1
Chang, Y.-C.2
Wang, Y.3
Huang, C.-L.4
Liu, Y.5
Tian, F.6
Granger, B.7
DeLisi, C.8
-
22
-
-
77956548953
-
Cytoscape web: an interactive web-based network browser
-
10.1093/bioinformatics/btq430, 2935447, 20656902
-
Lopes CT, Franz M, Kazi F, Donaldson SL, Morris Q, Bader GD. Cytoscape web: an interactive web-based network browser. Bioinformatics 2010, 26(18):2347-2348. 10.1093/bioinformatics/btq430, 2935447, 20656902.
-
(2010)
Bioinformatics
, vol.26
, Issue.18
, pp. 2347-2348
-
-
Lopes, C.T.1
Franz, M.2
Kazi, F.3
Donaldson, S.L.4
Morris, Q.5
Bader, G.D.6
-
23
-
-
84901431245
-
Cytoscape Web: Tutorial
-
Cytoscape Web: Tutorial. [http://cytoscapeweb.cytoscape.org/tutorial].
-
-
-
-
24
-
-
84901476634
-
Cytoscape.js
-
Cytoscape.js. [http://cytoscape.github.io/cytoscape.js/].
-
-
-
-
25
-
-
84901412291
-
Dynamic Link to Figure 3 in PINV
-
Dynamic Link to Figure 3 in PINV. [http://biosual.cbio.uct.ac.za/pinViewer.html?status=paper01].
-
-
-
-
26
-
-
84901439140
-
Dynamic Link to Figure 4 in PINV
-
Dynamic Link to Figure 4 in PINV. [http://biosual.cbio.uct.ac.za/pinViewer.html?status=paper02].
-
-
-
-
27
-
-
84901471993
-
CBIO Services/Tools
-
CBIO Services/Tools. [http://www.cbio.uct.ac.za/services.html#PINV].
-
-
-
|