메뉴 건너뛰기




Volumn 3, Issue , 2014, Pages

PPI layouts: BioJS components for the display of Protein-Protein Interactions

Author keywords

[No Author keywords available]

Indexed keywords

ALGORITHM; APPLICATION SERVICE PROVIDER; ARTICLE; COMPUTER ANALYSIS; COMPUTER GRAPHICS; COMPUTER NETWORK; COMPUTER PROGRAM; DATA ANALYSIS SOFTWARE; INTERNET; MOLECULAR INTERACTION; ONLINE SYSTEM; PROTEIN PROTEIN INTERACTION; WEB BROWSER;

EID: 84901462798     PISSN: 20461402     EISSN: 1759796X     Source Type: Journal    
DOI: 10.12688/f1000research.3-50.v1     Document Type: Article
Times cited : (7)

References (18)
  • 1
    • 33947419351 scopus 로고    scopus 로고
    • An evaluation of human protein-protein interaction data in the public domain
    • 17254303, 1764475
    • Mathivanan S Periaswamy B Gandhi TK: An evaluation of human protein-protein interaction data in the public domain. BMC Bioinformatics. 2006;7(Suppl 5):S19. 17254303 10.1186/1471-2105-7-S5-S19 1764475
    • (2006) BMC Bioinformatics , vol.7 , Issue.5 SUPPL , pp. S19
    • Mathivanan, S.1    Periaswamy, B.2    Gandhi, T.K.3
  • 2
    • 84859204939 scopus 로고    scopus 로고
    • The IntAct molecular interaction database in 2012
    • 22121220, 3245075, Database issue
    • Kerrien S Aranda B Breuza L: The IntAct molecular interaction database in 2012. Nucleic Acids Res. 2012;40(Database issue):D841-D846. 22121220 10.1093/nar/gkr1088 3245075
    • (2012) Nucleic Acids Res , vol.40 , pp. D841-D846
    • Kerrien, S.1    Aranda, B.2    Breuza, L.3
  • 3
    • 84876515907 scopus 로고    scopus 로고
    • String v9.1: protein-protein interaction networks, with increased coverage and integration
    • 23203871, 3531103, Database issue
    • Franceschini A Szklarczyk D Frankild S: String v9.1: protein-protein interaction networks, with increased coverage and integration. Nucleic Acids Res. 2013;41(Database issue):D808-D815. 23203871 10.1093/nar/gks1094 3531103
    • (2013) Nucleic Acids Res , vol.41 , pp. D808-D815
    • Franceschini, A.1    Szklarczyk, D.2    Frankild, S.3
  • 4
    • 38549130733 scopus 로고    scopus 로고
    • STITCH: interaction networks of chemicals and proteins
    • 18084021, 2238848, Database issue
    • Kuhn M von Mering C Campillos M: STITCH: interaction networks of chemicals and proteins. Nucleic Acids Res. 2008;36(Database issue):D684-D688. 18084021 10.1093/nar/gkm795 2238848
    • (2008) Nucleic Acids Res , vol.36 , pp. D684-D688
    • Kuhn, M.1    von Mering, C.2    Campillos, M.3
  • 5
    • 34548855730 scopus 로고    scopus 로고
    • Unequal evolutionary conservation of human protein interactions in interologous networks
    • 17535438, 1929159
    • Brown KR Jurisica I: Unequal evolutionary conservation of human protein interactions in interologous networks. Genome Biol. 2007;8(5):R95. 17535438 10.1186/gb-2007-8-5-r95 1929159
    • (2007) Genome Biol , vol.8 , Issue.5 , pp. R95
    • Brown, K.R.1    Jurisica, I.2
  • 6
    • 58149193222 scopus 로고    scopus 로고
    • Human protein reference database-2009 update
    • 18988627, 2686490
    • Keshava Prasad TS Goel R Kandasamy K: Human protein reference database-2009 update. Nucleic Acids Res. 2009;37(Database issue):D767-D772. 18988627 10.1093/nar/gkn892 2686490
    • (2009) Nucleic Acids Res , vol.37 , pp. D767-D772
    • Keshava Prasad, T.S.1    Goel, R.2    Kandasamy, K.3
  • 7
    • 38949210266 scopus 로고    scopus 로고
    • Human proteinpedia enables sharing of human protein data
    • 18259167
    • Mathivanan S Ahmed M Ahn NG: Human proteinpedia enables sharing of human protein data. Nat Biotechnol. 2008;26(2):164-167. 18259167 10.1038/nbt0208-164
    • (2008) Nat Biotechnol , vol.26 , Issue.2 , pp. 164-167
    • Mathivanan, S.1    Ahmed, M.2    Ahn, N.G.3
  • 8
    • 84860918589 scopus 로고    scopus 로고
    • Mint, the molecular interaction database: 2012 update
    • 22096227, 3244991, Database issue
    • Licata L Briganti L Peluso D: Mint, the molecular interaction database: 2012 update. Nucleic Acids Res. 2012;40(Database issue):D857-D861. 22096227 10.1093/nar/gkr930 3244991
    • (2012) Nucleic Acids Res , vol.40 , pp. D857-D861
    • Licata, L.1    Briganti, L.2    Peluso, D.3
  • 9
    • 63549137956 scopus 로고    scopus 로고
    • HAPPI: an online database of comprehensive human annotated and predicted protein interactions
    • 19594875, 2709259
    • Chen JY Mamidipalli S Huan T: HAPPI: an online database of comprehensive human annotated and predicted protein interactions. BMC Genomics. 2009;10(Suppl 1):S16. 19594875 10.1186/1471-2164-10-S1-S16 2709259
    • (2009) BMC Genomics , vol.10 , Issue.1 SUPPL , pp. S16
    • Chen, J.Y.1    Mamidipalli, S.2    Huan, T.3
  • 10
    • 0242490780 scopus 로고    scopus 로고
    • Cytoscape: A software environment for integrated models of biomolecular interaction networks
    • Ozier O, 14597658, 403769
    • Shannon P Markiel A Ozier O: Cytoscape: A software environment for integrated models of biomolecular interaction networks. Genome Res. 2003;13(11):2498-2504. 14597658 10.1101/gr.1239303 403769
    • (2003) Genome Res , vol.13 , Issue.11 , pp. 2498-2504
    • Shannon, P.1    Markiel, A.2
  • 11
    • 84883576667 scopus 로고    scopus 로고
    • VISANT 4.0: Integrative network platform to connect genes, drugs, diseases and therapies
    • 23716640, 3692070, Web Server issue
    • Hu Z Chang YC Wang Y: VISANT 4.0: Integrative network platform to connect genes, drugs, diseases and therapies. Nucleic Acids Res. 2013;41(Web Server issue):W225-W231. 23716640 10.1093/nar/gkt401 3692070
    • (2013) Nucleic Acids Res , vol.41 , pp. W225-W231
    • Hu, Z.1    Chang, Y.C.2    Wang, Y.3
  • 12
    • 35748962289 scopus 로고    scopus 로고
    • Tools for visually exploring biological networks
    • 17720984
    • Suderman M Hallett M: Tools for visually exploring biological networks. Bioinformatics. 2007;23(20):2651-2659. 17720984 10.1093/bioinformatics/btm401
    • (2007) Bioinformatics , vol.23 , Issue.20 , pp. 2651-2659
    • Suderman, M.1    Hallett, M.2
  • 13
    • 77649252269 scopus 로고    scopus 로고
    • Visualization of omics data for systems biology
    • 20195258
    • Gehlenborg N O'Donoghue SI Baliga NS: Visualization of omics data for systems biology. Nat Methods. 2010;7(3 Suppl):S56-68. 20195258 10.1038/nmeth.1436
    • (2010) Nat Methods , vol.7 , Issue.3 SUPPL , pp. S56-68
    • Gehlenborg, N.1    O'Donoghue, S.I.2    Baliga, N.S.3
  • 14
    • 84872421580 scopus 로고    scopus 로고
    • Visualization of protein interaction networks: problems and solutions
    • 23368786, 3548679
    • Agapito G Guzzi PH Cannataro M: Visualization of protein interaction networks: problems and solutions. BMC Bioinformatics. 2013;14(Suppl 1):S1. 23368786 10.1186/1471-2105-14-S1-S1 3548679
    • (2013) BMC Bioinformatics , vol.14 , Issue.1 SUPPL , pp. S1
    • Agapito, G.1    Guzzi, P.H.2    Cannataro, M.3
  • 15
    • 84876252208 scopus 로고    scopus 로고
    • BioJS: An open source javascript framework for biological data visualization
    • 23435069, 3624812
    • Gómez J García LJ Salazar GA: BioJS: An open source javascript framework for biological data visualization. Bioinformatics. 2013;29(8):1103-4. 23435069 10.1093/bioinformatics/btt100 3624812
    • (2013) Bioinformatics , vol.29 , Issue.8 , pp. 1103-1104
    • Gómez, J.1    García, L.J.2    Salazar, G.A.3
  • 17
    • 1842575639 scopus 로고    scopus 로고
    • The mycobacterium tuberculosis rv2358-furb operon is induced by zinc
    • 15059632
    • Milano A Branzoni M Canneva F: The mycobacterium tuberculosis rv2358-furb operon is induced by zinc. Res Microbiol. 2004;155(3):192-200. 15059632 10.1016/j.resmic.2003.11.009
    • (2004) Res Microbiol , vol.155 , Issue.3 , pp. 192-200
    • Milano, A.1    Branzoni, M.2    Canneva, F.3
  • 18
    • 84916609169 scopus 로고    scopus 로고
    • Biojs components for the display of protein-protein interactions
    • Data Source
    • Salazar GA Meintjes A Mulder N: Biojs components for the display of protein-protein interactions. Zenodo. 2014. Data Source
    • (2014) Zenodo
    • Salazar, G.A.1    Meintjes, A.2    Mulder, N.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.