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Volumn 10, Issue , 2009, Pages

Graphle: Interactive exploration of large, dense graphs

Author keywords

[No Author keywords available]

Indexed keywords

COMPUTATIONAL PREDICTIONS; FUNCTIONAL INTERACTION; FUNCTIONAL RELATIONSHIP; HETEROGENEOUS DATA INTEGRATIONS; INTERACTIVE ANALYSIS; INTERACTIVE EXPLORATION; PROTEIN-PROTEIN INTERACTIONS; VISUALIZATION ENGINE;

EID: 74049130341     PISSN: None     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-10-417     Document Type: Article
Times cited : (14)

References (31)
  • 2
    • 0033669189 scopus 로고    scopus 로고
    • A network of protein-protein interactions in yeast
    • 10.1038/82360, 11101803
    • Schwikowski B, Uetz P, Fields S. A network of protein-protein interactions in yeast. Nat Biotechnol 2000, 18(12):1257-1261. 10.1038/82360, 11101803.
    • (2000) Nat Biotechnol , vol.18 , Issue.12 , pp. 1257-1261
    • Schwikowski, B.1    Uetz, P.2    Fields, S.3
  • 3
    • 13444309633 scopus 로고    scopus 로고
    • ProViz: protein interaction visualization and exploration
    • 10.1093/bioinformatics/bth494, 15347570
    • Iragne F, Nikolski M, Mathieu B, Auber D, Sherman D. ProViz: protein interaction visualization and exploration. Bioinformatics 2005, 21(2):272-274. 10.1093/bioinformatics/bth494, 15347570.
    • (2005) Bioinformatics , vol.21 , Issue.2 , pp. 272-274
    • Iragne, F.1    Nikolski, M.2    Mathieu, B.3    Auber, D.4    Sherman, D.5
  • 4
    • 0032776303 scopus 로고    scopus 로고
    • Molecular interaction map of the mammalian cell cycle control and DNA repair systems
    • 25504, 10436023
    • Kohn KW. Molecular interaction map of the mammalian cell cycle control and DNA repair systems. Mol Biol Cell 1999, 10(8):2703-2734. 25504, 10436023.
    • (1999) Mol Biol Cell , vol.10 , Issue.8 , pp. 2703-2734
    • Kohn, K.W.1
  • 6
    • 0037264280 scopus 로고    scopus 로고
    • Osprey: a network visualization system
    • 10.1186/gb-2003-4-3-r22, 153462, 12620107
    • Breitkreutz BJ, Stark C, Tyers M. Osprey: a network visualization system. Genome Biol 2003, 4(3):R22. 10.1186/gb-2003-4-3-r22, 153462, 12620107.
    • (2003) Genome Biol , vol.4 , Issue.3
    • Breitkreutz, B.J.1    Stark, C.2    Tyers, M.3
  • 7
    • 33747853260 scopus 로고    scopus 로고
    • APID: Agile Protein Interaction DataAnalyzer
    • Web Server, 10.1093/nar/gkl128, 1538863, 16845013
    • Prieto C, De Las Rivas J. APID: Agile Protein Interaction DataAnalyzer. Nucleic acids research 2006, (34 Web Server):W298-302. 10.1093/nar/gkl128, 1538863, 16845013.
    • (2006) Nucleic acids research , Issue.34
    • Prieto, C.1    De Las Rivas, J.2
  • 8
    • 23144444420 scopus 로고    scopus 로고
    • ArrayXPath II: mapping and visualizing microarray gene-expression data with biomedical ontologies and integrated biological pathway resources using Scalable Vector Graphics
    • Web Server, 10.1093/nar/gki450, 1160211, 15980549
    • Chung HJ, Park CH, Han MR, Lee S, Ohn JH, Kim J, Kim JH. ArrayXPath II: mapping and visualizing microarray gene-expression data with biomedical ontologies and integrated biological pathway resources using Scalable Vector Graphics. Nucleic acids research 2005, (33 Web Server):W621-626. 10.1093/nar/gki450, 1160211, 15980549.
    • (2005) Nucleic acids research , Issue.33
    • Chung, H.J.1    Park, C.H.2    Han, M.R.3    Lee, S.4    Ohn, J.H.5    Kim, J.6    Kim, J.H.7
  • 9
    • 35748937331 scopus 로고    scopus 로고
    • Construction, visualisation, and clustering of transcription networks from microarray expression data
    • 10.1371/journal.pcbi.0030206, 2041979, 17967053
    • Freeman TC, Goldovsky L, Brosch M, van Dongen S, Maziere P, Grocock RJ, Freilich S, Thornton J, Enright AJ. Construction, visualisation, and clustering of transcription networks from microarray expression data. PLoS Comput Biol 2007, 3(10):2032-2042. 10.1371/journal.pcbi.0030206, 2041979, 17967053.
    • (2007) PLoS Comput Biol , vol.3 , Issue.10 , pp. 2032-2042
    • Freeman, T.C.1    Goldovsky, L.2    Brosch, M.3    van Dongen, S.4    Maziere, P.5    Grocock, R.J.6    Freilich, S.7    Thornton, J.8    Enright, A.J.9
  • 10
    • 0142179209 scopus 로고    scopus 로고
    • Prediction of regulatory networks: genome-wide identification of transcription factor targets from gene expression data
    • 10.1093/bioinformatics/btg347, 14555624
    • Qian J, Lin J, Luscombe NM, Yu H, Gerstein M. Prediction of regulatory networks: genome-wide identification of transcription factor targets from gene expression data. Bioinformatics 2003, 19(15):1917-1926. 10.1093/bioinformatics/btg347, 14555624.
    • (2003) Bioinformatics , vol.19 , Issue.15 , pp. 1917-1926
    • Qian, J.1    Lin, J.2    Luscombe, N.M.3    Yu, H.4    Gerstein, M.5
  • 11
    • 17644427718 scopus 로고    scopus 로고
    • Causal protein-signaling networks derived from multiparameter single-cell data
    • Sachs K, Perez O, Pe'er D, Lauffenburger DA, Nolan GP. Causal protein-signaling networks derived from multiparameter single-cell data. Science (New York, NY) 2005, 308(5721):523-529.
    • (2005) Science (New York, NY) , vol.308 , Issue.5721 , pp. 523-529
    • Sachs, K.1    Perez, O.2    Pe'er, D.3    Lauffenburger, D.A.4    Nolan, G.P.5
  • 15
    • 0034274870 scopus 로고    scopus 로고
    • An open graph visualization system and its applications to software engineering
    • Gansner ER, North SC. An open graph visualization system and its applications to software engineering. Software - Practice and Experience 2000, 30(11):1203-1233.
    • (2000) Software - Practice and Experience , vol.30 , Issue.11 , pp. 1203-1233
    • Gansner, E.R.1    North, S.C.2
  • 16
    • 33747832812 scopus 로고    scopus 로고
    • BiologicalNetworks: visualization and analysis tool for systems biology
    • Web Server, 10.1093/nar/gkl308, 1538788, 16845051
    • Baitaluk M, Sedova M, Ray A, Gupta A. BiologicalNetworks: visualization and analysis tool for systems biology. Nucleic acids research 2006, (34 Web Server):W466-471. 10.1093/nar/gkl308, 1538788, 16845051.
    • (2006) Nucleic acids research , Issue.34
    • Baitaluk, M.1    Sedova, M.2    Ray, A.3    Gupta, A.4
  • 18
    • 67849122322 scopus 로고    scopus 로고
    • VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology
    • Web Server, 10.1093/nar/gkp406, 2703932, 19465394
    • Hu Z, Hung JH, Wang Y, Chang YC, Huang CL, Huyck M, DeLisi C. VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology. Nucleic acids research 2009, (37 Web Server):W115-121. 10.1093/nar/gkp406, 2703932, 19465394.
    • (2009) Nucleic acids research , Issue.37
    • Hu, Z.1    Hung, J.H.2    Wang, Y.3    Chang, Y.C.4    Huang, C.L.5    Huyck, M.6    DeLisi, C.7
  • 19
    • 2942534292 scopus 로고    scopus 로고
    • LGL: creating a map of protein function with an algorithm for visualizing very large biological networks
    • 10.1016/j.jmb.2004.04.047, 15184029
    • Adai AT, Date SV, Wieland S, Marcotte EM. LGL: creating a map of protein function with an algorithm for visualizing very large biological networks. J Mol Biol 2004, 340(1):179-190. 10.1016/j.jmb.2004.04.047, 15184029.
    • (2004) J Mol Biol , vol.340 , Issue.1 , pp. 179-190
    • Adai, A.T.1    Date, S.V.2    Wieland, S.3    Marcotte, E.M.4
  • 20
    • 33748257786 scopus 로고    scopus 로고
    • Graemlin: general and robust alignment of multiple large interaction networks
    • 10.1101/gr.5235706, 1557769, 16899655
    • Flannick J, Novak A, Srinivasan BS, McAdams HH, Batzoglou S. Graemlin: general and robust alignment of multiple large interaction networks. Genome Res 2006, 16(9):1169-1181. 10.1101/gr.5235706, 1557769, 16899655.
    • (2006) Genome Res , vol.16 , Issue.9 , pp. 1169-1181
    • Flannick, J.1    Novak, A.2    Srinivasan, B.S.3    McAdams, H.H.4    Batzoglou, S.5
  • 21
    • 70449651828 scopus 로고    scopus 로고
    • VANLO--interactive visual exploration of aligned biological networks
    • 10.1186/1471-2105-10-327, 2766391, 19821976
    • Brasch S, Linsen L, Fuellen G. VANLO--interactive visual exploration of aligned biological networks. BMC Bioinformatics 2009, 10:327. 10.1186/1471-2105-10-327, 2766391, 19821976.
    • (2009) BMC Bioinformatics , vol.10 , pp. 327
    • Brasch, S.1    Linsen, L.2    Fuellen, G.3
  • 22
    • 14744273317 scopus 로고    scopus 로고
    • Inferring network mechanisms: the Drosophila melanogaster protein interaction network
    • 10.1073/pnas.0409515102, 552930, 15728374
    • Middendorf M, Ziv E, Wiggins CH. Inferring network mechanisms: the Drosophila melanogaster protein interaction network. Proc Natl Acad Sci USA 2005, 102(9):3192-3197. 10.1073/pnas.0409515102, 552930, 15728374.
    • (2005) Proc Natl Acad Sci USA , vol.102 , Issue.9 , pp. 3192-3197
    • Middendorf, M.1    Ziv, E.2    Wiggins, C.H.3
  • 23
    • 35748962289 scopus 로고    scopus 로고
    • Tools for visually exploring biological networks
    • 10.1093/bioinformatics/btm401, 17720984
    • Suderman M, Hallett M. Tools for visually exploring biological networks. Bioinformatics 2007, 23(20):2651-2659. 10.1093/bioinformatics/btm401, 17720984.
    • (2007) Bioinformatics , vol.23 , Issue.20 , pp. 2651-2659
    • Suderman, M.1    Hallett, M.2
  • 24
    • 34548749776 scopus 로고    scopus 로고
    • Context-sensitive data integration and prediction of biological networks
    • 10.1093/bioinformatics/btm332, 17599939
    • Myers CL, Troyanskaya OG. Context-sensitive data integration and prediction of biological networks. Bioinformatics 2007, 23(17):2322-2330. 10.1093/bioinformatics/btm332, 17599939.
    • (2007) Bioinformatics , vol.23 , Issue.17 , pp. 2322-2330
    • Myers, C.L.1    Troyanskaya, O.G.2
  • 25
    • 33751359281 scopus 로고    scopus 로고
    • A scalable method for integration and functional analysis of multiple microarray datasets
    • 10.1093/bioinformatics/btl492, 17005538
    • Huttenhower C, Hibbs M, Myers C, Troyanskaya OG. A scalable method for integration and functional analysis of multiple microarray datasets. Bioinformatics 2006, 22(23):2890-2897. 10.1093/bioinformatics/btl492, 17005538.
    • (2006) Bioinformatics , vol.22 , Issue.23 , pp. 2890-2897
    • Huttenhower, C.1    Hibbs, M.2    Myers, C.3    Troyanskaya, O.G.4
  • 27
    • 46249093049 scopus 로고    scopus 로고
    • The Sleipnir library for computational functional genomics
    • 10.1093/bioinformatics/btn237, 2718674, 18499696
    • Huttenhower C, Schroeder M, Chikina MD, Troyanskaya OG. The Sleipnir library for computational functional genomics. Bioinformatics 2008, 24(13):1559-1561. 10.1093/bioinformatics/btn237, 2718674, 18499696.
    • (2008) Bioinformatics , vol.24 , Issue.13 , pp. 1559-1561
    • Huttenhower, C.1    Schroeder, M.2    Chikina, M.D.3    Troyanskaya, O.G.4
  • 31
    • 33947199781 scopus 로고    scopus 로고
    • Synthesis and function of membrane phosphoinositides in budding yeast, Saccharomyces cerevisiae
    • 1868553, 17382260
    • Strahl T, Thorner J. Synthesis and function of membrane phosphoinositides in budding yeast, Saccharomyces cerevisiae. Biochim Biophys Acta 2007, 1771(3):353-404. 1868553, 17382260.
    • (2007) Biochim Biophys Acta , vol.1771 , Issue.3 , pp. 353-404
    • Strahl, T.1    Thorner, J.2


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