-
1
-
-
34247138722
-
Nucleomorph genomes: Structure, function, origin and evolution
-
Archibald JM. 2007. Nucleomorph genomes: structure, function, origin and evolution. Bioessays 29:392-402.
-
(2007)
Bioessays
, vol.29
, pp. 392-402
-
-
Archibald, J.M.1
-
2
-
-
58349101981
-
The puzzle of plastid evolution
-
Archibald JM. 2009. The puzzle of plastid evolution. Curr Biol. 19: R81-R88.
-
(2009)
Curr Biol.
, vol.19
-
-
Archibald, J.M.1
-
3
-
-
0034980698
-
Molecular chaperones encoded by a reduced nucleus: The cryptomonad nucleomorph
-
Archibald JM, Cavalier-Smith T, Maier U, Douglas S. 2001. Molecular chaperones encoded by a reduced nucleus: the cryptomonad nucleomorph. J Mol Evol. 52:490-501.
-
(2001)
J Mol Evol.
, vol.52
, pp. 490-501
-
-
Archibald, J.M.1
Cavalier-Smith, T.2
Maier, U.3
Douglas, S.4
-
4
-
-
24944514808
-
Proteome composition in Plasmodium falciparum: Higher usage of GC-rich nonsynonymous codons in highly expressed genes
-
Chanda I, Pan A, Dutta C. 2005. Proteome composition in Plasmodium falciparum: higher usage of GC-rich nonsynonymous codons in highly expressed genes. J Mol Evol. 61:513-523.
-
(2005)
J Mol Evol.
, vol.61
, pp. 513-523
-
-
Chanda, I.1
Pan, A.2
Dutta, C.3
-
5
-
-
84870564943
-
Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs
-
Curtis BA, Tanifuji G, Burki F, Gruber A, Irimia M, Maruyama S, Arias MC, Ball SG, Gile GH, Hirakawa Y, et al. 2012. Algal genomes reveal evolutionary mosaicism and the fate of nucleomorphs. Nature 492: 59-65.
-
(2012)
Nature
, vol.492
, pp. 59-65
-
-
Curtis, B.A.1
Tanifuji, G.2
Burki, F.3
Gruber, A.4
Irimia, M.5
Maruyama, S.6
Arias, M.C.7
Ball, S.G.8
Gile, G.H.9
Hirakawa, Y.10
-
6
-
-
84863100082
-
What makes a chloroplast? Reconstructing the establishment of photosynthetic symbioses
-
Dorrell RG, Howe CJ. 2012. What makes a chloroplast? Reconstructing the establishment of photosynthetic symbioses. J Cell Sci. 125: 1865-1875.
-
(2012)
J Cell Sci.
, vol.125
, pp. 1865-1875
-
-
Dorrell, R.G.1
Howe, C.J.2
-
7
-
-
0035953753
-
The highly reduced genome of an enslaved algal nucleus
-
Douglas S, Zauner S, Fraunholz M, Beaton M, Penny S, Deng LT, Wu X, Reith M, Cavalier-Smith T, Maier UG. 2001. The highly reduced genome of an enslaved algal nucleus. Nature 410:1091-1096.
-
(2001)
Nature
, vol.410
, pp. 1091-1096
-
-
Douglas, S.1
Zauner, S.2
Fraunholz, M.3
Beaton, M.4
Penny, S.5
Deng, L.T.6
Wu, X.7
Reith, M.8
Cavalier-Smith, T.9
Maier, U.G.10
-
8
-
-
0034888792
-
Nucleomorph genomes: Much ado about practically nothing
-
Gilson PR. 2001. Nucleomorph genomes: much ado about practically nothing. Genome Biol. 2:REVIEWS1022.
-
(2001)
Genome Biol.
, vol.2
-
-
Gilson, P.R.1
-
9
-
-
33745476746
-
Complete nucleotide sequence of the chlorarachniophyte nucleomorph: Nature's smallest nucleus
-
Gilson PR, Su V, Slamovits CH, Reith ME, Keeling PJ, McFadden GI. 2006. Complete nucleotide sequence of the chlorarachniophyte nucleomorph: nature's smallest nucleus. Proc Natl Acad Sci USA. 103: 9566-9571.
-
(2006)
Proc Natl Acad Sci USA.
, vol.103
, pp. 9566-9571
-
-
Gilson, P.R.1
Su, V.2
Slamovits, C.H.3
Reith, M.E.4
Keeling, P.J.5
McFadden, G.I.6
-
11
-
-
0035037364
-
DNA microarray analysis of cyanobacterial gene expression during acclimation to high light
-
Hihara Y, Kamei A, Kanehisa M, Kaplan A, Ikeuchi M. 2001. DNA microarray analysis of cyanobacterial gene expression during acclimation to high light. Plant Cell 13:793-806.
-
(2001)
Plant Cell
, vol.13
, pp. 793-806
-
-
Hihara, Y.1
Kamei, A.2
Kanehisa, M.3
Kaplan, A.4
Ikeuchi, M.5
-
12
-
-
79953045190
-
Partenskyella glossopodia (Chlorarachniophyceae) possesses a nucleomorph genome of approximately 1 Mbp
-
Ishida K, Endo H, Koike S. 2011. Partenskyella glossopodia (Chlorarachniophyceae) possesses a nucleomorph genome of approximately 1 Mbp. Phycol Res. 59:120-122.
-
(2011)
Phycol Res.
, vol.59
, pp. 120-122
-
-
Ishida, K.1
Endo, H.2
Koike, S.3
-
13
-
-
77349112000
-
The endosymbiotic origin, diversification and fate of plastids
-
Keeling PJ. 2010. The endosymbiotic origin, diversification and fate of plastids. Philos Trans R Soc Lond B Biol Sci. 365:729-748.
-
(2010)
Philos Trans R Soc Lond B Biol Sci.
, vol.365
, pp. 729-748
-
-
Keeling, P.J.1
-
14
-
-
27444447414
-
Causes and effects of nuclear genome reduction
-
Keeling PJ, Slamovits CH. 2005. Causes and effects of nuclear genome reduction. Curr Opin Genet Dev. 15:601-608.
-
(2005)
Curr Opin Genet Dev.
, vol.15
, pp. 601-608
-
-
Keeling, P.J.1
Slamovits, C.H.2
-
15
-
-
38049150492
-
Nucleomorph genome of Hemiselmis andersenii reveals complete intron loss and compaction as a driver of protein structure and function
-
Lane CE, van den Heuvel K, Kozera C, Curtis BA, Parsons BJ, Bowman S, Archibald JM. 2007. Nucleomorph genome of Hemiselmis andersenii reveals complete intron loss and compaction as a driver of protein structure and function. Proc Natl Acad Sci USA. 104: 19908-19913.
-
(2007)
Proc Natl Acad Sci USA.
, vol.104
, pp. 19908-19913
-
-
Lane, C.E.1
Van Den Heuvel, K.2
Kozera, C.3
Curtis, B.A.4
Parsons, B.J.5
Bowman, S.6
Archibald, J.M.7
-
16
-
-
0034068234
-
Diurnal regulation of Hsp70s in leaf tissue
-
Li QB, Haskell D, Zhang C, Sung DY, Guy C. 2000. Diurnal regulation of Hsp70s in leaf tissue. Plant J. 21:373-378.
-
(2000)
Plant J.
, vol.21
, pp. 373-378
-
-
Li, Q.B.1
Haskell, D.2
Zhang, C.3
Sung, D.Y.4
Guy, C.5
-
17
-
-
28444484984
-
Genomic buffering mitigates the effects of deleterious mutations in bacteria
-
Maisnier-Patin S, Roth JR, Fredriksson. A° , Nyström T, Berg OG, Andersson DI. 2005. Genomic buffering mitigates the effects of deleterious mutations in bacteria. Nat Genet. 37:1376-1379.
-
(2005)
Nat Genet.
, vol.37
, pp. 1376-1379
-
-
Maisnier-Patin, S.1
Roth, J.R.2
Fredriksson, A.3
Nyström, T.4
Berg, O.G.5
Andersson, D.I.6
-
18
-
-
0032516147
-
Gene transfer to the nucleus and the evolution of chloroplasts
-
Martin W, Stoebe B, Goremykin V, Hansmann S, Hasegawa M, Kowallik KV. 1998. Gene transfer to the nucleus and the evolution of chloroplasts. Nature 393:162-165.
-
(1998)
Nature
, vol.393
, pp. 162-165
-
-
Martin, W.1
Stoebe, B.2
Goremykin, V.3
Hansmann, S.4
Hasegawa, M.5
Kowallik, K.V.6
-
19
-
-
83855165692
-
Extreme genome reduction in symbiotic bacteria
-
McCutcheon JP, Moran NA. 2012. Extreme genome reduction in symbiotic bacteria. Nat Rev Microbiol. 10:13-26.
-
(2012)
Nat Rev Microbiol.
, vol.10
, pp. 13-26
-
-
McCutcheon, J.P.1
Moran, N.A.2
-
21
-
-
84876063172
-
Nucleomorph genome sequence of the cryptophyte alga Chroomonas mesostigmatica CCMP1168 reveals lineagespecific gene loss and genome complexity
-
Moore CE, Curtis B, Mills T, Tanifuji G, Archibald JM. 2012. Nucleomorph genome sequence of the cryptophyte alga Chroomonas mesostigmatica CCMP1168 reveals lineagespecific gene loss and genome complexity. Genome Biol Evol. 4: 1162-1175.
-
(2012)
Genome Biol Evol.
, vol.4
, pp. 1162-1175
-
-
Moore, C.E.1
Curtis, B.2
Mills, T.3
Tanifuji, G.4
Archibald, J.M.5
-
22
-
-
0029866448
-
Accelerated evolution and Muller's rachet in endosymbiotic bacteria
-
Moran NA. 1996. Accelerated evolution and Muller's rachet in endosymbiotic bacteria. Proc Natl Acad Sci USA. 93:2873-2878.
-
(1996)
Proc Natl Acad Sci USA.
, vol.93
, pp. 2873-2878
-
-
Moran, N.A.1
-
23
-
-
46249106990
-
Mapping and quantifying mammalian transcriptomes by RNA-Seq
-
Mortazavi A,Williams BA,McCue K, Schaeffer L,Wold B. 2008. Mapping and quantifying mammalian transcriptomes by RNA-Seq. Nat Methods 5:621-628.
-
(2008)
Nat Methods
, vol.5
, pp. 621-628
-
-
Mortazavi, A.1
Williams, B.A.2
McCue, K.3
Schaeffer, L.4
Wold, B.5
-
24
-
-
33746547864
-
Comparative rates of evolution in endosymbiotic nuclear genomes
-
Patron NJ, Rogers MB, Keeling PJ. 2006. Comparative rates of evolution in endosymbiotic nuclear genomes. BMC Evol Biol. 6:46.
-
(2006)
BMC Evol Biol.
, vol.6
, pp. 46
-
-
Patron, N.J.1
Rogers, M.B.2
Keeling, P.J.3
-
25
-
-
84857242898
-
Cyanophora paradoxa genome elucidates origin of photosynthesis in algae and plants
-
Price DC, Chan CX, Yoon HS, Yang EC, Qiu H, Weber AP, Schwacke R, Gross J, Blouin NA, Lane C, et al. 2012. Cyanophora paradoxa genome elucidates origin of photosynthesis in algae and plants. Science 335:843-847.
-
(2012)
Science
, vol.335
, pp. 843-847
-
-
Price, D.C.1
Chan, C.X.2
Yoon, H.S.3
Yang, E.C.4
Qiu, H.5
Weber, A.P.6
Schwacke, R.7
Gross, J.8
Blouin, N.A.9
Lane, C.10
-
26
-
-
22744445156
-
Monophyly of primary photosynthetic eukaryotes: Green plants, red algae, and glaucophytes
-
Rodríguez-Ezpeleta N, Brinkmann H, Burey SC, Roure B, Burger G, Löffelhardt W, Bohnert HJ, Philippe H, Lang BF. 2005. Monophyly of primary photosynthetic eukaryotes: green plants, red algae, and glaucophytes. Curr Biol. 15:1325-1330.
-
(2005)
Curr Biol.
, vol.15
, pp. 1325-1330
-
-
Rodríguez-Ezpeleta, N.1
Brinkmann, H.2
Burey, S.C.3
Roure, B.4
Burger, G.5
Löffelhardt, W.6
Bohnert, H.J.7
Philippe, H.8
Lang, B.F.9
-
27
-
-
0036851187
-
Global changes in gene expression in response to high light in Arabidopsis
-
Rossel JB, Wilson IW, Pogson BJ. 2002. Global changes in gene expression in response to high light in Arabidopsis. Plant Physiol. 130: 1109-1120.
-
(2002)
Plant Physiol.
, vol.130
, pp. 1109-1120
-
-
Rossel, J.B.1
Wilson, I.W.2
Pogson, B.J.3
-
28
-
-
84886412961
-
Chaperone machines for protein folding, unfolding and disaggregation
-
Saibil H. 2013. Chaperone machines for protein folding, unfolding and disaggregation. Nat Rev Mol Cell Biol. 14:630-642.
-
(2013)
Nat Rev Mol Cell Biol.
, vol.14
, pp. 630-642
-
-
Saibil, H.1
-
29
-
-
20444395428
-
Gene expression levels influence amino acid usage and evolutionary rates in endosymbiotic bacteria
-
Schaber J, Rispe C, Wernegreen J, Buness A, Delmotte F, Silva FJ, Moya A. 2005. Gene expression levels influence amino acid usage and evolutionary rates in endosymbiotic bacteria. Gene 352:109-117.
-
(2005)
Gene
, vol.352
, pp. 109-117
-
-
Schaber, J.1
Rispe, C.2
Wernegreen, J.3
Buness, A.4
Delmotte, F.5
Silva, F.J.6
Moya, A.7
-
30
-
-
84870414392
-
Distribution of the SELMA translocon in secondary plastids of red algal origin and predicted uncoupling of ubiquitin-dependent translocation from degradation
-
Stork S, Moog D, Przyborski JM, Wilhelmi I, Zauner S, Maier UG. 2012. Distribution of the SELMA translocon in secondary plastids of red algal origin and predicted uncoupling of ubiquitin-dependent translocation from degradation. Eukaryot Cell. 11:1472-1481.
-
(2012)
Eukaryot Cell.
, vol.11
, pp. 1472-1481
-
-
Stork, S.1
Moog, D.2
Przyborski, J.M.3
Wilhelmi, I.4
Zauner, S.5
Maier, U.G.6
-
31
-
-
77953916528
-
HSP90 at the hub of protein homeostasis: Emerging mechanistic insights
-
Taipale M, Jarosz DF, Lindquist S. 2010. HSP90 at the hub of protein homeostasis: emerging mechanistic insights. Nat Rev Mol Cell Biol. 11:515-528.
-
(2010)
Nat Rev Mol Cell Biol.
, vol.11
, pp. 515-528
-
-
Taipale, M.1
Jarosz, D.F.2
Lindquist, S.3
-
32
-
-
79953797995
-
Complete nucleomorph genome sequence of the nonphotosynthetic alga Cryptomonas paramecium reveals a core nucleomorph gene set
-
Tanifuji G, Onodera NT, Wheeler TJ, Dlutek M, Donaher N, Archibald JM. 2011. Complete nucleomorph genome sequence of the nonphotosynthetic alga Cryptomonas paramecium reveals a core nucleomorph gene set. Genome Biol Evol. 3:44-54.
-
(2011)
Genome Biol Evol.
, vol.3
, pp. 44-54
-
-
Tanifuji, G.1
Onodera, N.T.2
Wheeler, T.J.3
Dlutek, M.4
Donaher, N.5
Archibald, J.M.6
-
34
-
-
66649132872
-
Chaperonin overexpression promotes genetic variation and enzyme evolution
-
Tokuriki N, Tawfik DS. 2009. Chaperonin overexpression promotes genetic variation and enzyme evolution. Nature 459:668-673.
-
(2009)
Nature
, vol.459
, pp. 668-673
-
-
Tokuriki, N.1
Tawfik, D.S.2
-
35
-
-
0024722271
-
Three light-inducible heat shock genes of Chlamydomonas reinhardtii
-
von Gromoff ED, Treier U, Beck CF. 1989. Three light-inducible heat shock genes of Chlamydomonas reinhardtii. Mol Cell. 9:3911-3918.
-
(1989)
Mol Cell.
, vol.9
, pp. 3911-3918
-
-
Von Gromoff, E.D.1
Treier, U.2
Beck, C.F.3
-
36
-
-
0038575162
-
Consequences of reductive evolution for gene expression in an obligate endosymbiont
-
Wilcox JL, Dunbar HE, Wolfinger RD,Moran NA. 2003. Consequences of reductive evolution for gene expression in an obligate endosymbiont. Mol Microbiol. 48:1491-1500.
-
(2003)
Mol Microbiol.
, vol.48
, pp. 1491-1500
-
-
Wilcox, J.L.1
Dunbar, H.E.2
Wolfinger, R.D.3
Moran, N.A.4
-
37
-
-
23344449276
-
A high frequency of overlapping gene expression in compacted eukaryotic genomes
-
Williams BAP, Slamovits CH, Patron NJ, Fast NM, Keeling PJ. 2005. A high frequency of overlapping gene expression in compacted eukaryotic genomes. Proc Natl Acad Sci USA. 102: 10936-10941.
-
(2005)
Proc Natl Acad Sci USA.
, vol.102
, pp. 10936-10941
-
-
Williams, B.A.P.1
Slamovits, C.H.2
Patron, N.J.3
Fast, N.M.4
Keeling, P.J.5
|