Genotypic diversity and migration patterns of phytophthorainfestans in the nordic countries

Fungal Biology

Volumn 117, Issue 10, 2013, Pages 722-730

  Sjöholm, Lina ^a   Andersson, Björn ^a   Högberg, Nils ^a   Widmark, Anna Karin ^a   Yuen, Jonathan ^a  

^a SWEDISH UNIVERSITY OF AGRICULTURAL SCIENCES   (Sweden)

Author keywords

Effective population size; Potato late blight; Sexual reproduction; Simple sequence repeats (SSR); Stratified sampling

Indexed keywords

COALESCENCE; EFFECTIVE POPULATION SIZE; FUNGAL DISEASE; FUNGUS; GENETIC DIFFERENTIATION; GENOTYPE; MIGRATION; PATHOGEN; SEXUAL REPRODUCTION;

SCANDINAVIA;

PHYTOPHTHORA INFESTANS;

FUNGAL DNA; MICROSATELLITE DNA;

ARTICLE; CLASSIFICATION; EFFECTIVE POPULATION SIZE; GENETIC VARIABILITY; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; PHYLOGEOGRAPHY; PHYTOPHTHORA INFESTANS; PLANT DISEASE; POTATO LATE BLIGHT; REPRODUCTION; SIMPLE-SEQUENCE REPEATS (SSR); STRATIFIED SAMPLE;

EFFECTIVE POPULATION SIZE; POTATO LATE BLIGHT; SEXUAL REPRODUCTION; SIMPLE-SEQUENCE REPEATS (SSR); STRATIFIED SAMPLING;

DNA, FUNGAL; GENETIC VARIATION; MICROSATELLITE REPEATS; PHYLOGEOGRAPHY; PHYTOPHTHORA INFESTANS; PLANT DISEASES;

EID: 84885318121     PISSN: 18786146     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.funbio.2013.08.002     Document Type: Article

References (46)

1. Agapow P.M., Burt A. Indices of multilocus linkage disequilibrium. Molecular Ecology Notes 2001, 1:101-102.
2. Andersson B., Johansson M., Jönsson B. First report of Solanum physalifolium as a host plant for Phytophthora infestans in Sweden. Plant Disease 2003, 87. :1538-1538.
3. Andersson B., Sandström M., Strömberg A. Indications of soil borne inoculum of Phytophthora infestans. Potato Research 1998, 41:305-310.
4. Beerli P., Palczewski M. Unified framework to evaluate panmixia and migration direction among multiple sampling locations. Genetics 2010, 185:313-326.
5. Blandon-Diaz J.U., Widmark A.K., Hannukkala A., Andersson B., Hogberg N., Yuen J.E. Phenotypic variation within a clonal lineage of Phytophthora infestans infecting both tomato and potato in Nicaragua. Phytopathology 2012, 102:323-330.
6. Brown A.H.D., Feldman M.W., Nevo E. Multilocus structure of natural populations of Hordeum Spontaneum. Genetics 1980, 96:523-536.
7. Brurberg M.B., Elameen A., Le V.H., Naerstad R., Hermansen A., Lehtinen A., Hannukkala A., Nielsen B., Hansen J., Andersson B., Yuen J. Genetic analysis of Phytophthora infestans populations in the Nordic countries reveals high genetic variability. Fungal Biology 2011, 115:335-342.
8. Brurberg M.B., Hannukkala A., Hermansen A. Genetic variability of Phytophthora infestans in Norway and Finland as revealed by mating type and fingerprint probe RG57. Mycological Research 1999, 103:1609-1615.
9. Cobière R., Andrivon D. Preparation of A Simple Pea Medium for Culturing Phytophthora infestans 2003.
10. Cooke D.E.L., Cano L.M., Raffaele S., Bain R.A., Cooke L.R., Etherington G.J., Deahl K.L., Farrer R.A., Gilroy E.M., Goss E.M., Grünwald N.J., Hein I., MacLean D., McNicol J.W., Randall E., Oliva R.F., Pel M.A., Shaw D.S., Squires J.N., Taylor M.C., Vleeshouwers V.G.A.A., Birch P.R.J., Lees A.K., Kamoun S. Genome analyses of an aggressive and invasive lineage of the Irish potato famine pathogen. PLOS Pathogens 2012, 8:e1002940.
11. Dahlberg J., Andersson B., Nordskog B., Hermansen A. Field survey of oospore formation by Phytophthora infestans. Late Blight: managing the global threat 2002, 134. GILB Meeting, Hamburg, Germany.
12. Fay J.C., Fry W.E. Effects of hot and cold temperatures on the survival of oospores produced by United States strains of Phytophthora infestans. American Potato Journal 1997, 74:315-323.
13. Flier W.G., Kroon L., Hermansen A., van Raaij H.M.G., Speiser B., Tamm L., Fuchs J.G., Lambion J., Razzaghian J., Andrivon D., Wilcockson S., Leifert C. Genetic structure and pathogenicity of populations of Phytophthora infestans from organic potato crops in France, Norway, Switzerland and the United Kingdom. Plant Pathology 2007, 56:562-572.
14. Fry W., Goodwin S. Resurgence of the Irish potato famine fungus. Bioscience 1997, 47:363-371.
15. Fry W.E., Goodwin S.B., Matuszak J.M., Spielman L.J., Milgroom M.G., Drenth A. Population genetics and intercontinental migrations of Phytophthora infestans. Annual Review of Phytopathology 1992, 30:107-129.
16. Gallegly M.E., Galindo J. Mating types and oospores of Phytophthora infestans in nature in Mexico. Phytopathology 1958, 48:274-277.
17. Gardes M., Bruns T.D. ITS primers with enhanced specificity for basidiomycetes - application to the identification of mycorrhizae and rusts. Molecular Ecology 1993, 2:113-118.
18. Gisi U., Walder F., Resheat-Eini Z., Edel D., Sierotzki H. Changes of genotype, sensitivity and aggressiveness in Phytophthora infestans isolates collected in European countries in 1997, 2006 and 2007. Journal of Phytopathology 2011, 159:223-232.
19. Goodwin S.B., Cohen B.A., Fry W.E. Panglobal distribution of a single clonal lineage of the Irish potato famine fungus. Proceedings of the National Academy of Sciences of the United States of America 1994, 91:11591-11595.
20. Grünwald N.J., Goss E.M. Evolution and population genetics of exotic and re-emerging pathogens: novel tools and approaches. Annual Review of Phytopathology 2011, 49:249-267.
21. Grönberg L., Andersson B., Yuen J. Can weed hosts increase aggressiveness of Phytophthora infestans on potato?. Phytopathology 2012, 102:429-433.
22. Guo J., Lee T.D., Qu D.Y., Yao Y.Q., Gong X.F., Liang D.L., Xie K.Y., Wang X.W., Govers F. Phytophthora infestans isolates from Northern China show high virulence diversity but low genotypic diversity. Plant Biology 2009, 11:57-67.
23. 2-Paarungstyps bei Phytophthora infestans (Mont.) de Bary in Ostdeutschland. Potato Research 1991, 34:233-237.
24. Hannukkala A.O., Kaukoranta T., Lehtinen A., Rahkonen A. Late-blight epidemics on potato in Finland, 1933-2002; increased and earlier occurrence of epidemics associated with climate change and lack of rotation. Plant Pathology 2007, 56:167-176.
25. Hey J., Nielsen R. Multilocus methods for estimating population sizes, migration rates and divergence time, with applications to the divergence of Drosophila pseudoobscura and D. persimilis. Genetics 2004, 167:747-760.
26. Jakobsson M., Rosenberg N.A. CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure. Bioinformatics 2007, 23:1801-1806.
27. Knapova G., Tenzer I., Gessler C., Gisi U. Characterisation of Phytophthora infestans from potato and tomato with molecular markers. The 5th Congress of the European Foundation for Plant Pathology, Taormina, Italy 2001, 6-9.
28. Kuhner M.K. Coalescent genealogy samplers: windows into population history. Trends in Ecology & Evolution 2009, 24:86-93.
29. Lamour K.H., Hausbeck M.K. Investigating the spatiotemporal genetic structure of Phytophthora capsici in Michigan. Phytopathology 2001, 91:973-980.
30. Lees A.K., Cooke D.E.L., Stewart J.A., Sullivan L., Williams N.A., Carnegie S.F. Phytophthora infestans population changes: implications. Proceedings of the Eleventh Euroblight Workshop, Hamar, Norway 2008, H.T.A.M. Schepers (Ed.).
31. Lees A.K., Wattier R., Shaw D.S., Sullivan L., Williams N.A., Cooke D.E.L. Novel microsatellite markers for the analysis of Phytophthora infestans populations. Plant Pathology 2006, 55:311-319.
32. Lehtinen A., Hannukkala A. Oospores of Phytophthora infestans in soil provide an important new source of primary inoculum in Finland. Agricultural and Food Science 2004, 13:399-410.
33. McDonald B.A., McDermott J.M. Population genetics of plant pathogenic fungi. Bioscience 1993, 43:311-319.
34. Montarry J., Andrivon D., Glais I., Corbiere R., Mialdea G., Delmotte F. Microsatellite markers reveal two admixed genetic groups and an ongoing displacement within the French population of the invasive plant pathogen Phytophthora infestans. Molecular Ecology 2010, 19:1965-1977.
35. Niederhauser J.S. Phytophthora infestans: the Mexican connection. Phytophthora 1991, 25-45. Cambridge University Press, Cambridge, UK. J.A. Lucas, R.C. Shattock, D.S. Shaw, L.R. Cooke (Eds.).
36. Peakall R., Smouse P.E. GENALEX 6: genetic analysis in Excel. Population genetic software for teaching and research. Molecular Ecology Notes 2006, 6:288-295.
37. Pritchard J., Stephens M., Donnelly P. Inference of population structure using multilocus genotype data. Genetics 2000, 155.
38. Ristaino J.B., Groves C.T., Parra G.R. PCR amplification of the Irish potato famine pathogen from historic specimens. Nature 2001, 411:695-697.
39. Rosenberg N.A. Distruct: a program for the graphical display of population structure. Molecular Ecology Notes 2004, 4:137-138.
40. Shaw D.S. Genetics. Phytophthora infestans, the Cause of Late Blight of Potato 1991, 131-170. Academic Press Inc., UK, Cambridge. D.S. Ingram, P.H. Williams (Eds.).
41. Slatkin M. Gene flow in natural populations. Annual Review of Ecological Systems 1985, 16.
42. Smoot J.J., Gough F.J., Lamey H.A., Eichenmuller J.J., Gallegly M.E. Production and germination of oospores of Phytophthora infestans. Phytopathology 1958, 48:165-171.
43. Van Bekkum P.J., Kessel G.J.T., Burgers S.L.G.E., Förch M.G., Flier W.G. Extraction from plant tissue and germination in soil of Phytophthora infestans oospores. Proceedings of the Tenth Workshop of an European Network for Development of an Integrated Control Strategy of Potato Late Blight, Bologna, Italy 2007, 345-355. H.T.A.M. Schepers (Ed.).
44. van der Zaag D.E. Overwintering and epidemiology of P. infestans and new possibilities of control. Tijdschr Plantenziekten 1956, 62:89-156.
45. Widmark A.-K., Andersson B., Cassel-Lundhagen A., Sandström M., Yuen J.E. Phytophthora infestans in a single field in southwest Sweden early in spring: symptoms, spatial distribution and genotypic variation. Plant Pathology 2007, 56:573-579.
46. Widmark A.-K., Andersson B., Sandström M., Yuen J.E. Tracking Phytophthora infestans with SSR markers within and between seasons - a field study in Sweden. Plant Pathology 2011, 60:938-945.