메뉴 건너뛰기




Volumn 76, Issue , 2014, Pages 53-56

High-throughput sequencing shows inconsistent results with a microscope-based analysis of the soil prokaryotic community

Author keywords

Archaea; Bacteria; CARD FISH; High throughput sequencing; Soil prokaryotic community; Tundra ecosystem

Indexed keywords

BACTERIA; MICROORGANISMS; PLANTS (BOTANY); SOILS;

EID: 84901369470     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2014.05.010     Document Type: Article
Times cited : (16)

References (19)
  • 1
    • 42349093774 scopus 로고    scopus 로고
    • Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques
    • Amann R., Fuchs B.M. Single-cell identification in microbial communities by improved fluorescence in situ hybridization techniques. Nature Reviews Microbiology 2008, 6:339-348.
    • (2008) Nature Reviews Microbiology , vol.6 , pp. 339-348
    • Amann, R.1    Fuchs, B.M.2
  • 4
    • 77957244650 scopus 로고    scopus 로고
    • Search and clustering orders of magnitude faster than BLAST
    • Edgar R.C. Search and clustering orders of magnitude faster than BLAST. Bioinformatics 2010, 26:2460-2461.
    • (2010) Bioinformatics , vol.26 , pp. 2460-2461
    • Edgar, R.C.1
  • 5
    • 84884904719 scopus 로고    scopus 로고
    • UPARSE: highly accurate OTU sequences from microbial amplicon reads
    • Edgar R.C. UPARSE: highly accurate OTU sequences from microbial amplicon reads. Nature Methods 2013, 10:996-998.
    • (2013) Nature Methods , vol.10 , pp. 996-998
    • Edgar, R.C.1
  • 7
    • 46549086126 scopus 로고    scopus 로고
    • Improved detection of soil microorganisms using fluorescence in situ hybridization (FISH) and catalyzed reporter deposition (CARD-FISH)
    • Eickhorst T., Tippkötter R. Improved detection of soil microorganisms using fluorescence in situ hybridization (FISH) and catalyzed reporter deposition (CARD-FISH). Soil Biology and Biochemistry 2008, 40:1883-1891.
    • (2008) Soil Biology and Biochemistry , vol.40 , pp. 1883-1891
    • Eickhorst, T.1    Tippkötter, R.2
  • 9
    • 70350294348 scopus 로고    scopus 로고
    • Systematic artifacts in metagenomes from complex microbial communities
    • Gomez-Alvarez V., Teal T.K., Schmidt T.M. Systematic artifacts in metagenomes from complex microbial communities. ISME Journal 2009, 3:1314-1317.
    • (2009) ISME Journal , vol.3 , pp. 1314-1317
    • Gomez-Alvarez, V.1    Teal, T.K.2    Schmidt, T.M.3
  • 10
    • 84883560607 scopus 로고    scopus 로고
    • Cryogenic soil activity along bioclimatic gradients in Northern Sweden: insights from eight different proxies
    • Klaus M., Becher M., Klaminder J. Cryogenic soil activity along bioclimatic gradients in Northern Sweden: insights from eight different proxies. Permafrost and Periglacial Processes 2013, 24:210-223.
    • (2013) Permafrost and Periglacial Processes , vol.24 , pp. 210-223
    • Klaus, M.1    Becher, M.2    Klaminder, J.3
  • 11
    • 67651247607 scopus 로고    scopus 로고
    • Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale
    • Lauber C.L., Hamady M., Knight R., Fierer N. Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Applied and Environmental Microbiology 2009, 75:5111-5120.
    • (2009) Applied and Environmental Microbiology , vol.75 , pp. 5111-5120
    • Lauber, C.L.1    Hamady, M.2    Knight, R.3    Fierer, N.4
  • 12
    • 29144464937 scopus 로고    scopus 로고
    • UniFrac: a new phylogenetic method for comparing microbial communities
    • Lozupone C., Knight R. UniFrac: a new phylogenetic method for comparing microbial communities. Applied and Environmental Microbiology 2005, 71:8228-8235.
    • (2005) Applied and Environmental Microbiology , vol.71 , pp. 8228-8235
    • Lozupone, C.1    Knight, R.2
  • 13
    • 84867678334 scopus 로고    scopus 로고
    • The influence of non-sorted circles on species diversity of vascular plants, bryophytes and lichens in Sub-Arctic Tundra
    • Makoto K., Klaminder J. The influence of non-sorted circles on species diversity of vascular plants, bryophytes and lichens in Sub-Arctic Tundra. Polar Biology 2012, 35:1659-1667.
    • (2012) Polar Biology , vol.35 , pp. 1659-1667
    • Makoto, K.1    Klaminder, J.2
  • 15
    • 0036276618 scopus 로고    scopus 로고
    • Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria
    • Pernthaler A., Pernthaler J., Amann R. Fluorescence in situ hybridization and catalyzed reporter deposition for the identification of marine bacteria. Applied and Environmental Microbiology 2002, 68:3094-3101.
    • (2002) Applied and Environmental Microbiology , vol.68 , pp. 3094-3101
    • Pernthaler, A.1    Pernthaler, J.2    Amann, R.3
  • 18
    • 84878431009 scopus 로고    scopus 로고
    • CARD-FISH analysis of prokaryotic community composition and abundance along small-scale vegetation gradients in a dry arctic tundra ecosystem
    • Ushio M., Makoto K., Klaminder J., Nakano S.I. CARD-FISH analysis of prokaryotic community composition and abundance along small-scale vegetation gradients in a dry arctic tundra ecosystem. Soil Biology and Biochemistry 2013, 64:147-154.
    • (2013) Soil Biology and Biochemistry , vol.64 , pp. 147-154
    • Ushio, M.1    Makoto, K.2    Klaminder, J.3    Nakano, S.I.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.