메뉴 건너뛰기




Volumn 196, Issue 3, 2014, Pages 625-642

Detecting structure of haplotypes and local ancestry

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHROMOSOME 2; CHROMOSOME 6; CHROMOSOME 8; DISEASE ASSOCIATION; EFFECTIVE POPULATION SIZE; GENE FREQUENCY; GENE LINKAGE DISEQUILIBRIUM; GENE MUTATION; GENE STRUCTURE; GENETIC ASSOCIATION; GENETIC DISTANCE; HAPLOTYPE; HIDDEN MARKOV MODEL; HUMAN; INHERITANCE; PRIORITY JOURNAL;

EID: 84901335340     PISSN: 00166731     EISSN: 19432631     Source Type: Journal    
DOI: 10.1534/genetics.113.160697     Document Type: Article
Times cited : (143)

References (34)
  • 1
    • 0029199341 scopus 로고
    • A method for quantifying differentiation between populations at multi-allelic loci and its implications for investigating identity and paternity
    • Balding, D. J., and R. A. Nichols, 1995 A method for quantifying differentiation between populations at multi-allelic loci and its implications for investigating identity and paternity. Genetica 96: 3-12.
    • (1995) Genetica , vol.96 , pp. 3-12
    • Balding, D.J.1    Nichols, R.A.2
  • 2
    • 84861127863 scopus 로고    scopus 로고
    • Fast and accurate inference of local ancestry in Latino populations
    • Baran, Y., B. Pasaniuc, S. Sankararaman, D. G. Torgerson, C. Gignoux et al., 2012 Fast and accurate inference of local ancestry in Latino populations. Bioinformatics 28(10): 1359-1367.
    • (2012) Bioinformatics , vol.28 , Issue.10 , pp. 1359-1367
    • Baran, Y.1    Pasaniuc, B.2    Sankararaman, S.3    Torgerson, D.G.4    Gignoux, C.5
  • 3
    • 35348817330 scopus 로고    scopus 로고
    • Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering
    • Browning, S. R., and B. L. Browning, 2007 Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering. Am. J. Hum. Genet. 81(5): 1084-1097.
    • (2007) Am. J. Hum. Genet. , vol.81 , Issue.5 , pp. 1084-1097
    • Browning, S.R.1    Browning, B.L.2
  • 4
    • 84871044214 scopus 로고    scopus 로고
    • Multiway admixture deconvolution using phased or unphased ancestral panels
    • Churchhouse, C., and J. Marchini, 2013 Multiway admixture deconvolution using phased or unphased ancestral panels. Genet. Epidemiol. 37(1): 1-12.
    • (2013) Genet. Epidemiol. , vol.37 , Issue.1 , pp. 1-12
    • Churchhouse, C.1    Marchini, J.2
  • 5
    • 33750444621 scopus 로고    scopus 로고
    • A worldwide survey of haplotype variation and linkage disequilibrium in the human genome
    • Conrad, D. F., M. Jakobsson, G. Coop, X. Wen, J. D. Wall et al., 2006 A worldwide survey of haplotype variation and linkage disequilibrium in the human genome. Nat. Genet. 38(11): 1251-1260.
    • (2006) Nat. Genet. , vol.38 , Issue.11 , pp. 1251-1260
    • Conrad, D.F.1    Jakobsson, M.2    Coop, G.3    Wen, X.4    Wall, J.D.5
  • 6
    • 84856478855 scopus 로고    scopus 로고
    • A linear complexity phasing method for thousands of genomes
    • Delaneau, O., J. Marchini, and J. Zagury, 2012 A linear complexity phasing method for thousands of genomes. Nat. Methods 9 (1): 179-181.
    • (2012) Nat. Methods , vol.9 , Issue.1 , pp. 179-181
    • Delaneau, O.1    Marchini, J.2    Zagury, J.3
  • 8
    • 0029075560 scopus 로고
    • The transmission/disequilibrium test: History, subdivision, and admixture
    • Ewens, W. J., and R. S. Spielman, 1995 The transmission/disequilibrium test: history, subdivision, and admixture. Am. J. Hum. Genet. 57(2): 455-464.
    • (1995) Am. J. Hum. Genet. , vol.57 , Issue.2 , pp. 455-464
    • Ewens, W.J.1    Spielman, R.S.2
  • 9
    • 0036433716 scopus 로고    scopus 로고
    • Approximate likelihood methods for estimating local recombination rates
    • Fearnhead, P., and P. Donnelly, 2002 Approximate likelihood methods for estimating local recombination rates. J. R. Stat. Soc. B 64: 657-680.
    • (2002) J. R. Stat. Soc. B , vol.64 , pp. 657-680
    • Fearnhead, P.1    Donnelly, P.2
  • 10
    • 58149175796 scopus 로고    scopus 로고
    • Practical issues in imputationbased association mapping
    • Guan, Y., and M. Stephens, 2008 Practical issues in imputationbased association mapping. PLoS Genet. 4(12): e1000279.
    • (2008) PLoS Genet. , vol.4 , Issue.12
    • Guan, Y.1    Stephens, M.2
  • 11
    • 0020744702 scopus 로고
    • Properties of a neutral allele model with intragenic recombination
    • Hudson, R. R., 1983 Properties of a neutral allele model with intragenic recombination. Theor. Popul. Biol. 23: 183-201.
    • (1983) Theor. Popul. Biol. , vol.23 , pp. 183-201
    • Hudson, R.R.1
  • 12
    • 35348983887 scopus 로고    scopus 로고
    • A second generation human haplotype map of over 3.1 million snps
    • International HapMap Consortium
    • International HapMap Consortium, 2007 A second generation human haplotype map of over 3.1 million snps. Nature 449(7164): 851-861.
    • (2007) Nature , vol.449 , Issue.7164 , pp. 851-861
  • 13
    • 77956331627 scopus 로고    scopus 로고
    • Integrating common and rare genetic variation in diverse human populations
    • International HapMap Consortium
    • International HapMap Consortium, 2010 Integrating common and rare genetic variation in diverse human populations. Nature 467(7311): 52-58.
    • (2010) Nature , vol.467 , Issue.7311 , pp. 52-58
  • 15
    • 0002556819 scopus 로고
    • On the genealogy of large populations
    • Kingman, J. F. C., 1982 On the genealogy of large populations. J. Appl. Probab.19(A): 27-43.
    • (1982) J. Appl. Probab. , vol.19 , Issue.A , pp. 27-43
    • Kingman, J.F.C.1
  • 16
    • 50949095168 scopus 로고    scopus 로고
    • Methods for detecting associations with rare variants for common diseases: Application to analysis of sequence data
    • Li, B., and S. M. Leal, 2008 Methods for detecting associations with rare variants for common diseases: application to analysis of sequence data. Am. J. Hum. Genet. 83(3): 311-321.
    • (2008) Am. J. Hum. Genet. , vol.83 , Issue.3 , pp. 311-321
    • Li, B.1    Leal, S.M.2
  • 17
    • 71149118765 scopus 로고    scopus 로고
    • Genetic landscape of Eurasia and admixture inUyghurs
    • Li, H., K. Cho, J. R. Kidd, and K. Kidd, 2009 Genetic landscape of Eurasia and admixture inUyghurs. Am. J. Hum. Genet. 85: 934-937.
    • (2009) Am. J. Hum. Genet. , vol.85 , pp. 934-937
    • Li, H.1    Cho, K.2    Kidd, J.R.3    Kidd, K.4
  • 18
    • 39749181521 scopus 로고    scopus 로고
    • Worldwide human relationships inferred from genomewide patterns of variation
    • Li, J. Z., D. M. Absher, H. Tang, A. M. Southwick, A. M. Casto et al., 2008 Worldwide human relationships inferred from genomewide patterns of variation. Science 319(5866): 1100-1104.
    • (2008) Science , vol.319 , Issue.5866 , pp. 1100-1104
    • Li, J.Z.1    Absher, D.M.2    Tang, H.3    Southwick, A.M.4    Casto, A.M.5
  • 19
    • 0347361674 scopus 로고    scopus 로고
    • Modeling linkage disequilibrium, and identifying recombination hotspots using SNP data
    • Li, N., and M. Stephens, 2003 Modeling linkage disequilibrium, and identifying recombination hotspots using SNP data. Genetics 165: 2213-2233.
    • (2003) Genetics , vol.165 , pp. 2213-2233
    • Li, N.1    Stephens, M.2
  • 20
    • 10044238869 scopus 로고    scopus 로고
    • Haplotype block structures show significant variation among populations
    • Liu, N., S. L. Sawyer, N. Mukherjee, A. J. Pakstis, J. R. Kidd et al., 2004 Haplotype block structures show significant variation among populations. Genet. Epidemiol. 27(4): 385-400.
    • (2004) Genet. Epidemiol. , vol.27 , Issue.4 , pp. 385-400
    • Liu, N.1    Sawyer, S.L.2    Mukherjee, N.3    Pakstis, A.J.4    Kidd, J.R.5
  • 21
    • 84975742565 scopus 로고    scopus 로고
    • A map of human genome variation from population-scale sequencing
    • 1000 Genomes Project Consortium
    • 1000 Genomes Project Consortium, 2010 A map of human genome variation from population-scale sequencing. Nature 467 (7319): 1061-1073.
    • (2010) Nature , vol.467 , Issue.7319 , pp. 1061-1073
  • 23
    • 78751665863 scopus 로고    scopus 로고
    • A principled approach to deriving approximate conditional sampling distributions in population genetics models with recombination
    • Paul, J. S., and Y. S. Song, 2010 A principled approach to deriving approximate conditional sampling distributions in population genetics models with recombination. Genetics 186: 321-338.
    • (2010) Genetics , vol.186 , pp. 321-338
    • Paul, J.S.1    Song, Y.S.2
  • 24
    • 67651225410 scopus 로고    scopus 로고
    • Sensitive detection of chromosomal segments of distinct ancestry in admixed populations
    • Price, A. L., A. Tandon, N. Patterson, K. C. Barnes, N. Rafaels et al., 2009 Sensitive detection of chromosomal segments of distinct ancestry in admixed populations. PLoS Genet. 5(6): e1000519.
    • (2009) PLoS Genet. , vol.5 , Issue.6
    • Price, A.L.1    Tandon, A.2    Patterson, N.3    Barnes, K.C.4    Rafaels, N.5
  • 25
    • 0034118493 scopus 로고    scopus 로고
    • Inference of population structure using multilocus genotype data
    • Pritchard, J. K., M. Stephens, and P. Donnelly, 2000 Inference of population structure using multilocus genotype data. Genetics 155: 945-959.
    • (2000) Genetics , vol.155 , pp. 945-959
    • Pritchard, J.K.1    Stephens, M.2    Donnelly, P.3
  • 26
    • 33644974019 scopus 로고    scopus 로고
    • A fast and flexible statistical model for large-scale population genotype data: Applications to inferring missing genotypes and haplotypic phase
    • Scheet, P., and M. Stephens, 2006 A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase. Am. J. Hum. Genet. 78: 629-644.
    • (2006) Am. J. Hum. Genet. , vol.78 , pp. 629-644
    • Scheet, P.1    Stephens, M.2
  • 27
    • 22944467804 scopus 로고    scopus 로고
    • Mapping by admixture linkage disequilibrium: Advances, limitations and guidelines
    • Smith, M. W., and S. J. O'Brien, 2005 Mapping by admixture linkage disequilibrium: advances, limitations and guidelines. Nat. Rev. Genet. 6(8): 623-632.
    • (2005) Nat. Rev. Genet. , vol.6 , Issue.8 , pp. 623-632
    • Smith, M.W.1    O'Brien, S.J.2
  • 30
    • 41649089607 scopus 로고    scopus 로고
    • Effect of genetic divergence in identifying ancestral origin using HAPAA
    • Sundquist, A., E. Fratkin, C. B. Do, and S. Batzoglou, 2008 Effect of genetic divergence in identifying ancestral origin using HAPAA. Genome Res. 18(4): 676-682.
    • (2008) Genome Res. , vol.18 , Issue.4 , pp. 676-682
    • Sundquist, A.1    Fratkin, E.2    Do, C.B.3    Batzoglou, S.4
  • 31
    • 33745228973 scopus 로고    scopus 로고
    • Reconstructing genetic ancestry blocks in admixed individuals
    • Tang, H., M. Coram, P. Wang, X. Zhu, and N. Risch, 2006 Reconstructing genetic ancestry blocks in admixed individuals. Am. J. Hum. Genet. 79(1): 1-12.
    • (2006) Am. J. Hum. Genet. , vol.79 , Issue.1 , pp. 1-12
    • Tang, H.1    Coram, M.2    Wang, P.3    Zhu, X.4    Risch, N.5
  • 32
    • 65549159987 scopus 로고    scopus 로고
    • Population genomic inference of recombination rates and hotspots
    • Wang, Y., and B. Rannala, 2009 Population genomic inference of recombination rates and hotspots. Proc. Natl. Acad. Sci. USA 106(15): 6215-6219.
    • (2009) Proc. Natl. Acad. Sci. USA , vol.106 , Issue.15 , pp. 6215-6219
    • Wang, Y.1    Rannala, B.2
  • 33
    • 51149090386 scopus 로고    scopus 로고
    • A genome-wide analysis of admixture in Uyghurs and a high-density admixture map for disease-gene discovery
    • Xu, S., and L. Jin, 2008 A genome-wide analysis of admixture in Uyghurs and a high-density admixture map for disease-gene discovery. Am. J. Hum. Genet. 83(3): 322-336.
    • (2008) Am. J. Hum. Genet. , vol.83 , Issue.3 , pp. 322-336
    • Xu, S.1    Jin, L.2
  • 34
    • 78651109312 scopus 로고    scopus 로고
    • Completely phased genome sequencing through chromosome sorting
    • Yang, H., X. Chen, and W. H. Wong, 2011 Completely phased genome sequencing through chromosome sorting. Proc. Natl. Acad. Sci. USA 108(1): 12-17.
    • (2011) Proc. Natl. Acad. Sci. USA , vol.108 , Issue.1 , pp. 12-17
    • Yang, H.1    Chen, X.2    Wong, W.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.