-
1
-
-
61449135985
-
Fast and flexible simulation of DNA sequence data
-
CHEN, G. K., P. MARJORAM and J. D. WALL, 2009 Fast and flexible simulation of DNA sequence data. Genome Res. 19: 136-142.
-
(2009)
Genome Res.
, vol.19
, pp. 136-142
-
-
Chen, G.K.1
Marjoram, P.2
Wall, J.D.3
-
2
-
-
3042700117
-
Evidence for substantial fine-scale variation in recombination rates across the human genome
-
CRAWFORD, D. C., T. BHANGALE, N. LI, G. HELLENTHAL, M. J. RIEDER et al., 2004 Evidence for substantial fine-scale variation in recombination rates across the human genome. Nat. Genet. 36: 700-706.
-
(2004)
Nat. Genet.
, vol.36
, pp. 700-706
-
-
Crawford, D.C.1
Bhangale, T.2
Li, N.3
Hellenthal, G.4
Rieder, M.J.5
-
3
-
-
65849353922
-
An approximate likelihood for genetic data under a model with recombination and population splitting
-
DAVISON, D., J. K. PRITCHARD and G. COOP, 2009 An approximate likelihood for genetic data under a model with recombination and population splitting. Theor. Popul. Biol. 75(4): 331-345.
-
(2009)
Theor. Popul. Biol.
, vol.75
, Issue.4
, pp. 331-345
-
-
Davison, D.1
Pritchard, J.K.2
Coop, G.3
-
4
-
-
3142712394
-
Importance sampling on coalescent histories I
-
DE IORIO, M., and R. C. GRIFFITHS, 2004a Importance sampling on coalescent histories I. Adv. Appl. Probab. 36: 417-433.
-
(2004)
Adv. Appl. Probab.
, vol.36
, pp. 417-433
-
-
De Iorio, M.1
Griffiths, R.C.2
-
5
-
-
3142769862
-
Importance sampling on coalescent histories II
-
DE IORIO, M., and R. C. GRIFFITHS, 2004b Importance sampling on coalescent histories II. Adv. Appl. Probab. 36: 434-454.
-
(2004)
Adv. Appl. Probab.
, vol.36
, pp. 434-454
-
-
De Iorio, M.1
Griffiths, R.C.2
-
6
-
-
0035675042
-
Estimating recombination rates from population genetic data
-
FEARNHEAD, P., and P. DONNELLY, 2001 Estimating recombination rates from population genetic data. Genetics 159: 1299-1318. (Pubitemid 34033469)
-
(2001)
Genetics
, vol.159
, Issue.3
, pp. 1299-1318
-
-
Fearnhead, P.1
Donnelly, P.2
-
7
-
-
0036433716
-
Approximate likelihood methods for estimating local recombination rates
-
FEARNHEAD, P., and P. DONNELLY, 2002 Approximate likelihood methods for estimating local recombination rates. J. R. Stat. Soc. B 64: 657-680.
-
(2002)
J. R. Stat. Soc. B
, vol.64
, pp. 657-680
-
-
Fearnhead, P.1
Donnelly, P.2
-
8
-
-
27244445943
-
A novel method with improved power to detect recombination hotspots from polymorphism data reveals multiple hotspots in human genes
-
FEARNHEAD, P., and N. G. C. SMITH, 2005 A novel method with improved power to detect recombination hotspots from polymorphism data reveals multiple hotspots in human genes. Am. J. Hum. Genet. 77: 781-794.
-
(2005)
Am. J. Hum. Genet.
, vol.77
, pp. 781-794
-
-
Fearnhead, P.1
Smith, N.G.C.2
-
9
-
-
35549000476
-
Estimating meiotic gene conversion rates from population genetic data
-
GAY, J. C., S. MYERS and G. MCVEAN, 2007 Estimating meiotic gene conversion rates from population genetic data. Genetics 177: 881-894.
-
(2007)
Genetics
, vol.177
, pp. 881-894
-
-
Gay, J.C.1
Myers, S.2
Mcvean, G.3
-
10
-
-
0000579476
-
Neutral two-locus multiple allele models with recombination
-
GRIFFITHS, R. C., 1981 Neutral two-locus multiple allele models with recombination. Theor. Popul. Biol. 19: 169-186.
-
(1981)
Theor. Popul. Biol.
, vol.19
, pp. 169-186
-
-
Griffiths, R.C.1
-
11
-
-
0030498194
-
Ancestral inference from samples of DNA sequences with recombination
-
GRIFFITHS, R. C., and P. MARJORAM, 1996 Ancestral inference from samples of DNA sequences with recombination. J. Comput. Biol. 3(4): 479-502.
-
(1996)
J. Comput. Biol.
, vol.3
, Issue.4
, pp. 479-502
-
-
Griffiths, R.C.1
Marjoram, P.2
-
12
-
-
49349097737
-
Importance sampling and the two-locus model with subdivided population structure
-
GRIFFITHS, R. C., P. A. JENKINS and Y. S. SONG, 2008 Importance sampling and the two-locus model with subdivided population structure. Adv. Appl. Probab. 40(2): 473-500.
-
(2008)
Adv. Appl. Probab.
, vol.40
, Issue.2
, pp. 473-500
-
-
Griffiths, R.C.1
Jenkins, P.A.2
Song, Y.S.3
-
13
-
-
44949241466
-
Inferring human colonization history using a copying model
-
HELLENTHAL, G., A. AUTON and D. FALUSH, 2008 Inferring human colonization history using a copying model. PLoS Genet. 4: e1000078.
-
(2008)
PLoS Genet.
, vol.4
-
-
Hellenthal, G.1
Auton, A.2
Falush, D.3
-
14
-
-
67651222400
-
A flexible and accurate genotype imputation method for the next generation of genome-wide association studies
-
HOWIE, B. N., P. DONNELLY and J. MARCHINI, 2009 A flexible and accurate genotype imputation method for the next generation of genome-wide association studies. PLoS Genet. 5(6): e1000529.
-
(2009)
PLoS Genet.
, vol.5
, Issue.6
-
-
Howie, B.N.1
Donnelly, P.2
Marchini, J.3
-
15
-
-
0020744702
-
Properties of a neutral allele model with intragenic recombination
-
HUDSON, R. R., 1983 Properties of a neutral allele model with intragenic recombination. Theor. Popul. Biol. 23: 183-201.
-
(1983)
Theor. Popul. Biol.
, vol.23
, pp. 183-201
-
-
Hudson, R.R.1
-
16
-
-
0035692320
-
Two-locus sampling distributions and their application
-
HUDSON, R. R., 2001 Two-locus sampling distributions and their application. Genetics 159: 1805-1817.
-
(2001)
Genetics
, vol.159
, pp. 1805-1817
-
-
Hudson, R.R.1
-
17
-
-
72449134764
-
Closed-form two-locus sampling distributions: Accuracy and universality
-
JENKINS, P. A., and Y. S. SONG, 2009 Closed-form two-locus sampling distributions: accuracy and universality. Genetics 183: 1087-1103.
-
(2009)
Genetics
, vol.183
, pp. 1087-1103
-
-
Jenkins, P.A.1
Song, Y.S.2
-
18
-
-
77953815370
-
An asymptotic sampling formula for the coalescent with recombination
-
JENKINS, P. A., and Y. S. SONG, 2010 An asymptotic sampling formula for the coalescent with recombination. Ann. Appl. Probab. 20: 1005-1028.
-
(2010)
Ann. Appl. Probab.
, vol.20
, pp. 1005-1028
-
-
Jenkins, P.A.1
Song, Y.S.2
-
19
-
-
73449098993
-
Inference of microbial recombination rates from metagenomic data
-
JOHNSON, P., and M. SLATKIN, 2009 Inference of microbial recombination rates from metagenomic data. PLoS Genet. 5(10): e1000674.
-
(2009)
PLoS Genet.
, vol.5
, Issue.10
-
-
Johnson, P.1
Slatkin, M.2
-
21
-
-
0002556819
-
On the genealogy of large populations
-
KINGMAN, J. F. C., 1982b On the genealogy of large populations. J. Appl. Probab. 19A: 27-43.
-
(1982)
J. Appl. Probab.
, vol.19 A
, pp. 27-43
-
-
Kingman, J.F.C.1
-
22
-
-
0033756316
-
Maximum likelihood estimation of recombination rates from population data
-
KUHNER, M. K., J. YAMATO and J. FELSENSTEIN, 2000 Maximum likelihood estimation of recombination rates from population data. Genetics 156: 1393-1401.
-
(2000)
Genetics
, vol.156
, pp. 1393-1401
-
-
Kuhner, M.K.1
Yamato, J.2
Felsenstein, J.3
-
23
-
-
0347361674
-
Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data
-
LI, N., and M. STEPHENS, 2003 Modeling linkage disequilibrium and identifying recombination hotspots using single-nucleotide polymorphism data. Genetics 165: 2213-2233.
-
(2003)
Genetics
, vol.165
, pp. 2213-2233
-
-
Li, N.1
Stephens, M.2
-
24
-
-
37549064336
-
Mach 1.0: Rapid haplotype reconstruction and missing genotype inference
-
LI, Y., and G. R. ABECASIS, 2006 Mach 1.0: rapid haplotype reconstruction and missing genotype inference. Am. J. Hum. Genet. S79: 2290.
-
(2006)
Am. J. Hum. Genet.
, vol.S79
, pp. 2290
-
-
Li, Y.1
Abecasis, G.R.2
-
25
-
-
34347344976
-
A new multipoint method for genome-wide association studies by imputation of genotypes
-
MARCHINI, J., B. HOWIE, S. R. MYERS, G. MCVEAN and P. DONNELLY, 2007 A new multipoint method for genome-wide association studies by imputation of genotypes. Nat. Genet. 39(7): 906-913.
-
(2007)
Nat. Genet.
, vol.39
, Issue.7
, pp. 906-913
-
-
Marchini, J.1
Howie, B.2
Myers, S.R.3
Mcvean, G.4
Donnelly, P.5
-
26
-
-
33748799967
-
Modern computational approaches for analysing molecular genetic variation data
-
MARJORAM, P., and S. TAVARÉ, 2006 Modern computational approaches for analysing molecular genetic variation data. Nat. Rev. Genet. 7: 759-770.
-
(2006)
Nat. Rev. Genet.
, vol.7
, pp. 759-770
-
-
Marjoram, P.1
Tavaré, S.2
-
27
-
-
33646348730
-
Fast "coalescent" simulation
-
MARJORAM, P., and J. D. WALL, 2006 Fast "coalescent" simulation. BMC Genet. 7: 16.
-
(2006)
BMC Genet.
, vol.7
, pp. 16
-
-
Marjoram, P.1
Wall, J.D.2
-
29
-
-
0036199914
-
A coalescent-based method for detecting and estimating recombination from gene sequences
-
MCVEAN, G., P. AWADALLA and P. FEARNHEAD, 2002 A coalescent-based method for detecting and estimating recombination from gene sequences. Genetics 160: 1231-1241.
-
(2002)
Genetics
, vol.160
, pp. 1231-1241
-
-
Mcvean, G.1
Awadalla, P.2
Fearnhead, P.3
-
30
-
-
2142773942
-
The fine-scale structure of recombination rate variation in the human genome
-
MCVEAN, G. A. T., S. R. MYERS, S. HUNT, P. DELOUKAS, D. R. BENTLEY et al., 2004 The fine-scale structure of recombination rate variation in the human genome. Science 304: 581-584.
-
(2004)
Science
, vol.304
, pp. 581-584
-
-
Mcvean, G.A.T.1
Myers, S.R.2
Hunt, S.3
Deloukas, P.4
Bentley, D.R.5
-
31
-
-
0033965571
-
Estimation of population parameters and recombination rates from single nucleotide polymorphisms
-
NIELSEN, R., 2000 Estimation of population parameters and recombination rates from single nucleotide polymorphisms. Genetics 154: 931-942.
-
(2000)
Genetics
, vol.154
, pp. 931-942
-
-
Nielsen, R.1
-
32
-
-
67651225410
-
Sensitive detection of chromosomal segments of distinct ancestry in admixed populations
-
PRICE, A. L., A. TANDON, N. PATTERSON, K. C. BARNES, N. RAFAELS et al., 2009 Sensitive detection of chromosomal segments of distinct ancestry in admixed populations. PLoS Genet. 5(6): e1000519.
-
(2009)
PLoS Genet.
, vol.5
, Issue.6
-
-
Price, A.L.1
Tandon, A.2
Patterson, N.3
Barnes, K.C.4
Rafaels, N.5
-
33
-
-
33644974019
-
A fast and flexible statistical model for large-scale population genotype data: Applications to inferring missing genotypes and haplotypic phase
-
SCHEET, P., and M. STEPHENS, 2006 A fast and flexible statistical model for large-scale population genotype data: applications to inferring missing genotypes and haplotypic phase. Am. J. Hum. Genet. 78: 629-644.
-
(2006)
Am. J. Hum. Genet.
, vol.78
, pp. 629-644
-
-
Scheet, P.1
Stephens, M.2
-
34
-
-
0034354581
-
Inference in molecular population genetics
-
STEPHENS, M., and P. DONNELLY, 2000 Inference in molecular population genetics. J. R. Stat. Soc. B 62: 605-655.
-
(2000)
J. R. Stat. Soc. B
, vol.62
, pp. 605-655
-
-
Stephens, M.1
Donnelly, P.2
-
35
-
-
13844270527
-
Accounting for decay of linkage disequilibrium in haplotype inference and missing-data imputation
-
STEPHENS, M., and P. SCHEET, 2005 Accounting for decay of linkage disequilibrium in haplotype inference and missing-data imputation. Am. J. Hum. Genet. 76(3): 449-462.
-
(2005)
Am. J. Hum. Genet.
, vol.76
, Issue.3
, pp. 449-462
-
-
Stephens, M.1
Scheet, P.2
-
36
-
-
57149092597
-
Bayesian inference of fine-scale recombination rates using population genomic data
-
WANG, Y., and B. RANNALA, 2008 Bayesian inference of fine-scale recombination rates using population genomic data. Philos. Trans. R. Soc. B 363(1512): 3921-3930.
-
(2008)
Philos. Trans. R. Soc. B
, vol.363
, Issue.1512
, pp. 3921-3930
-
-
Wang, Y.1
Rannala, B.2
-
37
-
-
0033150745
-
Recombination as a point process along sequences
-
WIUF, C., and J. HEIN, 1999 Recombination as a point process along sequences. Theor. Popul. Biol. 55(3): 248-259.
-
(1999)
Theor. Popul. Biol.
, vol.55
, Issue.3
, pp. 248-259
-
-
Wiuf, C.1
Hein, J.2
-
38
-
-
66349109784
-
Joint estimation of gene conversion rates and mean conversion tract lengths from population SNP data
-
YIN, J., M. I. JORDAN and Y. S. SONG, 2009 Joint estimation of gene conversion rates and mean conversion tract lengths from population SNP data. Bioinformatics 25(12): i231-i239.
-
(2009)
Bioinformatics
, vol.25
, Issue.12
-
-
Yin, J.1
Jordan, M.I.2
Song, Y.S.3
|