메뉴 건너뛰기




Volumn 5, Issue APR, 2014, Pages

Trans-regulation of RNA-binding protein motifs by microRNA

Author keywords

Dark matter; MicroRNA (miRNA); Non coding RNA; Post transcriptional regulation; RNA binding proteins (RBPs); Stem loop binding protein (SLBP); Structural interacting RNA (sxRNA)

Indexed keywords

5 AMINOLEVULINATE SYNTHASE; HISTONE; MESSENGER RNA; MICRORNA; RIBOSOME RNA; RNA BINDING PROTEIN; TRANS ACTING FACTOR; UNTRANSLATED RNA;

EID: 84901022086     PISSN: None     EISSN: 16648021     Source Type: Journal    
DOI: 10.3389/fgene.2014.00079     Document Type: Article
Times cited : (14)

References (62)
  • 1
    • 80455168361 scopus 로고    scopus 로고
    • Enhanced translation by Nucleolin via G-rich elements in coding and non-coding regions of target mRNAs
    • doi: 10.1093/nar/gkr488
    • Abdelmohsen, K., Tominaga, K., Lee, E. K., Srikantan, S., Kang, M.-J., Kim, M. M., et al. (2011). Enhanced translation by Nucleolin via G-rich elements in coding and non-coding regions of target mRNAs. Nucleic Acids Res. 39, 8513-8530. doi: 10.1093/nar/gkr488.
    • (2011) Nucleic Acids Res. , vol.39 , pp. 8513-8530
    • Abdelmohsen, K.1    Tominaga, K.2    Lee, E.K.3    Srikantan, S.4    Kang, M.-J.5    Kim, M.M.6
  • 3
    • 84877926794 scopus 로고    scopus 로고
    • Multi-disciplinary methods to define RNA-protein interactions and regulatory networks
    • doi: 10.1016/j.gde.2013.01.003
    • Ascano, M., Gerstberger, S., and Tuschl, T. (2013). Multi-disciplinary methods to define RNA-protein interactions and regulatory networks. Curr. Opin. Genet. Dev. 23, 20-28. doi: 10.1016/j.gde.2013.01.003.
    • (2013) Curr. Opin. Genet. Dev. , vol.23 , pp. 20-28
    • Ascano, M.1    Gerstberger, S.2    Tuschl, T.3
  • 4
    • 33744973775 scopus 로고    scopus 로고
    • Relief of microRNA-mediated translational repression in human cells subjected to stress
    • doi: 10.1016/j.cell.2006.04.031
    • Bhattacharyya, S. N., Habermacher, R., Martine, U., Closs, E. I., and Filipowicz, W. (2006). Relief of microRNA-mediated translational repression in human cells subjected to stress. Cell 125, 1111-1124. doi: 10.1016/j.cell.2006.04.031.
    • (2006) Cell , vol.125 , pp. 1111-1124
    • Bhattacharyya, S.N.1    Habermacher, R.2    Martine, U.3    Closs, E.I.4    Filipowicz, W.5
  • 5
    • 18044379515 scopus 로고    scopus 로고
    • Microarray identification of FMRP-associated brain mRNAs and altered mRNA translational profiles in fragile X syndrome
    • doi: 10.1016/S0092-8674(01)00568-2
    • Brown, V., Jin, P., Ceman, S., Darnell, J. C., O'Donnell, W. T., Tenenbaum, S. A., et al. (2001). Microarray identification of FMRP-associated brain mRNAs and altered mRNA translational profiles in fragile X syndrome. Cell 107, 477-487. doi: 10.1016/S0092-8674(01)00568-2.
    • (2001) Cell , vol.107 , pp. 477-487
    • Brown, V.1    Jin, P.2    Ceman, S.3    Darnell, J.C.4    O'Donnell, W.T.5    Tenenbaum, S.A.6
  • 6
    • 77950527724 scopus 로고    scopus 로고
    • The RNA binding protein HuR differentially regulates unique subsets of mRNAs in estrogen receptor negative and estrogen receptor positive breast cancer
    • doi: 10.1186/1471-2407-10-126
    • Calaluce, R., Gubin, M. M., Davis, J. W., Magee, J. D., Chen, J., Kuwano, Y., et al. (2010). The RNA binding protein HuR differentially regulates unique subsets of mRNAs in estrogen receptor negative and estrogen receptor positive breast cancer. BMC Cancer 10:126. doi: 10.1186/1471-2407-10-126.
    • (2010) BMC Cancer , vol.10 , pp. 126
    • Calaluce, R.1    Gubin, M.M.2    Davis, J.W.3    Magee, J.D.4    Chen, J.5    Kuwano, Y.6
  • 7
    • 84867613445 scopus 로고    scopus 로고
    • Alternative mRNA fates identified in microRNA-associated transcriptome analysis
    • doi: 10.1186/1471-2164-13-561
    • Carroll, A. P., Tran, N., Tooney, P. A., and Cairns, M. J. (2012). Alternative mRNA fates identified in microRNA-associated transcriptome analysis. BMC Genomics 13:561. doi: 10.1186/1471-2164-13-561.
    • (2012) BMC Genomics , vol.13 , pp. 561
    • Carroll, A.P.1    Tran, N.2    Tooney, P.A.3    Cairns, M.J.4
  • 8
    • 84879153972 scopus 로고    scopus 로고
    • The dark matter rises: the expanding world of regulatory RNAs
    • doi: 10.1042/bse0540001
    • Clark, M. B., Choudhary, A., Smith, M. A., Taft, R. J., and Mattick, J. S. (2013). The dark matter rises: the expanding world of regulatory RNAs. Essays Biochem. 54, 1-16. doi: 10.1042/bse0540001.
    • (2013) Essays Biochem. , vol.54 , pp. 1-16
    • Clark, M.B.1    Choudhary, A.2    Smith, M.A.3    Taft, R.J.4    Mattick, J.S.5
  • 9
    • 1542297742 scopus 로고    scopus 로고
    • Identification of a target RNA motif for RNA-binding protein HuR
    • doi: 10.1073/pnas.0306453101
    • De Silanes, I. L., Zhan, M., Lal, A., Yang, X., and Gorospe, M. (2004). Identification of a target RNA motif for RNA-binding protein HuR. Proc. Natl. Acad. Sci. U.S.A. 101, 2987-2992. doi: 10.1073/pnas.0306453101.
    • (2004) Proc. Natl. Acad. Sci. U.S.A. , vol.101 , pp. 2987-2992
    • De Silanes, I.L.1    Zhan, M.2    Lal, A.3    Yang, X.4    Gorospe, M.5
  • 10
    • 22544452988 scopus 로고    scopus 로고
    • NF-κB-mediated MyoD decay during muscle wasting requires nitric oxide synthase mRNA stabilization, HuR protein, and nitric oxide release
    • doi: 10.1128/MCB.25.15.6533
    • Di Marco, S., Mazroui, R., Dallaire, P., Chittur, S., Tenenbaum, S. A., Radzioch, D., et al. (2005). NF-κB-mediated MyoD decay during muscle wasting requires nitric oxide synthase mRNA stabilization, HuR protein, and nitric oxide release. Society 25, 6533-6545. doi: 10.1128/MCB.25.15.6533.
    • (2005) Society , vol.25 , pp. 6533-6545
    • Di Marco, S.1    Mazroui, R.2    Dallaire, P.3    Chittur, S.4    Tenenbaum, S.A.5    Radzioch, D.6
  • 11
    • 80053523254 scopus 로고    scopus 로고
    • The evolution of RNAs with multiple functions
    • doi: 10.1016/j.biochi.2011.07.018
    • Dinger, M. E., Gascoigne, D. K., and Mattick, J. S. (2011). The evolution of RNAs with multiple functions. Biochimie 93, 2013-2018. doi: 10.1016/j.biochi.2011.07.018.
    • (2011) Biochimie , vol.93 , pp. 2013-2018
    • Dinger, M.E.1    Gascoigne, D.K.2    Mattick, J.S.3
  • 12
    • 0032826096 scopus 로고    scopus 로고
    • Formation of the 3' end of histone mRNA
    • doi: 10.1016/S0378-1119(99)00367-4
    • Dominski, Z., and Marzluff, W. F. (1999). Formation of the 3' end of histone mRNA. Gene 239, 1-14. doi: 10.1016/S0378-1119(99)00367-4.
    • (1999) Gene , vol.239 , pp. 1-14
    • Dominski, Z.1    Marzluff, W.F.2
  • 13
    • 0036512117 scopus 로고    scopus 로고
    • Messenger-RNA-binding proteins and the messages they carry
    • doi: 10.1038/nrm760
    • Dreyfuss, G., Kim, V. N., and Kataoka, N. (2002). Messenger-RNA-binding proteins and the messages they carry. Nat. Rev. Mol. Cell Biol. 3, 195-205. doi: 10.1038/nrm760.
    • (2002) Nat. Rev. Mol. Cell Biol. , vol.3 , pp. 195-205
    • Dreyfuss, G.1    Kim, V.N.2    Kataoka, N.3
  • 14
    • 84865790047 scopus 로고    scopus 로고
    • An integrated encyclopedia of DNA elements in the human genome
    • doi: 10.1038/nature11247
    • Dunham, I., Kundaje, A., Aldred, S. F., Collins, P. J., Davis, C. A., Doyle, F., et al. (2012). An integrated encyclopedia of DNA elements in the human genome. Nature 489, 57-74. doi: 10.1038/nature11247.
    • (2012) Nature , vol.489 , pp. 57-74
    • Dunham, I.1    Kundaje, A.2    Aldred, S.F.3    Collins, P.J.4    Davis, C.A.5    Doyle, F.6
  • 15
    • 52349122355 scopus 로고    scopus 로고
    • Comparative analysis of mRNA targets for human PUF-family proteins suggests extensive interaction with the miRNA regulatory system
    • doi: 10.1371/journal.pone.0003164
    • Galgano, A., Forrer, M., Jaskiewicz, L., Kanitz, A., Zavolan, M., and Gerber, A. P. (2008). Comparative analysis of mRNA targets for human PUF-family proteins suggests extensive interaction with the miRNA regulatory system. PLoS ONE 3:e3164. doi: 10.1371/journal.pone.0003164.
    • (2008) PLoS ONE , vol.3
    • Galgano, A.1    Forrer, M.2    Jaskiewicz, L.3    Kanitz, A.4    Zavolan, M.5    Gerber, A.P.6
  • 16
    • 33748918907 scopus 로고    scopus 로고
    • MicroRNA modulation of RNA-binding protein regulatory elements
    • doi: 10.4161/rna.3.2.3250
    • George, A. D., and Tenenbaum, S. A. (2006). MicroRNA modulation of RNA-binding protein regulatory elements. RNA Biol. 3, 57-59. doi: 10.4161/rna.3.2.3250.
    • (2006) RNA Biol. , vol.3 , pp. 57-59
    • George, A.D.1    Tenenbaum, S.A.2
  • 17
    • 19344365947 scopus 로고    scopus 로고
    • Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast
    • doi: 10.1371/journal.pbio.0020079
    • Gerber, A. P., Herschlag, D., and Brown, P. O. (2004). Extensive association of functionally and cytotopically related mRNAs with Puf family RNA-binding proteins in yeast. PLoS Biol. 2:E79. doi: 10.1371/journal.pbio.0020079.
    • (2004) PLoS Biol. , vol.2
    • Gerber, A.P.1    Herschlag, D.2    Brown, P.O.3
  • 18
    • 33645217973 scopus 로고    scopus 로고
    • Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster
    • doi: 10.1073/pnas.0509260103
    • Gerber, A. P., Luschnig, S., Krasnow, M. A., Brown, P. O., and Herschlag, D. (2006). Genome-wide identification of mRNAs associated with the translational regulator PUMILIO in Drosophila melanogaster. Proc. Natl. Acad. Sci. U.S.A. 103, 4487-4492. doi: 10.1073/pnas.0509260103.
    • (2006) Proc. Natl. Acad. Sci. U.S.A. , vol.103 , pp. 4487-4492
    • Gerber, A.P.1    Luschnig, S.2    Krasnow, M.A.3    Brown, P.O.4    Herschlag, D.5
  • 19
    • 0041620253 scopus 로고    scopus 로고
    • PatSearch: a program for the detection of patterns and structural motifs in nucleotide sequences
    • doi: 10.1093/nar/gkg548
    • Grillo, G., Licciulli, F., Liuni, S., Sbisà, E., and Pesole, G. (2003). PatSearch: a program for the detection of patterns and structural motifs in nucleotide sequences. Nucleic Acids Res. 31, 3608-3612. doi: 10.1093/nar/gkg548.
    • (2003) Nucleic Acids Res. , vol.31 , pp. 3608-3612
    • Grillo, G.1    Licciulli, F.2    Liuni, S.3    Sbisà, E.4    Pesole, G.5
  • 20
    • 75549083389 scopus 로고    scopus 로고
    • UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs
    • doi: 10.1093/nar/gkp902
    • Grillo, G., Turi, A., Licciulli, F., Mignone, F., Liuni, S., Banfi, S., et al. (2010). UTRdb and UTRsite (RELEASE 2010): a collection of sequences and regulatory motifs of the untranslated regions of eukaryotic mRNAs. Nucleic Acids Res. 38, D75-D80. doi: 10.1093/nar/gkp902.
    • (2010) Nucleic Acids Res. , vol.38
    • Grillo, G.1    Turi, A.2    Licciulli, F.3    Mignone, F.4    Liuni, S.5    Banfi, S.6
  • 21
    • 84857066786 scopus 로고    scopus 로고
    • Modular regulatory principles of large non-coding RNAs
    • doi: 10.1038/nature10887
    • Guttman, M., and Rinn, J. L. (2012). Modular regulatory principles of large non-coding RNAs. Nature 482, 339-346. doi: 10.1038/nature10887.
    • (2012) Nature , vol.482 , pp. 339-346
    • Guttman, M.1    Rinn, J.L.2
  • 22
    • 77950920903 scopus 로고    scopus 로고
    • Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP
    • doi: 10.1016/j.cell.2010.03.009
    • Hafner, M., Landthaler, M., Burger, L., Khorshid, M., Hausser, J., Berninger, P., et al. (2010). Transcriptome-wide identification of RNA-binding protein and microRNA target sites by PAR-CLIP. Cell 141, 129-141. doi: 10.1016/j.cell.2010.03.009.
    • (2010) Cell , vol.141 , pp. 129-141
    • Hafner, M.1    Landthaler, M.2    Burger, L.3    Khorshid, M.4    Hausser, J.5    Berninger, P.6
  • 23
    • 54949148332 scopus 로고    scopus 로고
    • Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system
    • doi: 10.1371/journal.pbio.0060255
    • Hogan, D. J., Riordan, D. P., Gerber, A. P., Herschlag, D., and Brown, P. O. (2008). Diverse RNA-binding proteins interact with functionally related sets of RNAs, suggesting an extensive regulatory system. PLoS Biol. 6:e255. doi: 10.1371/journal.pbio.0060255.
    • (2008) PLoS Biol. , vol.6
    • Hogan, D.J.1    Riordan, D.P.2    Gerber, A.P.3    Herschlag, D.4    Brown, P.O.5
  • 24
    • 0345276475 scopus 로고    scopus 로고
    • Differential phosphorylation and subcellular localization of La RNPs associated with precursor tRNAs and translation-related mRNAs
    • doi: 10.1016/S1097-2765(03)00429-5
    • Intine, R. V., Tenenbaum, S. A., Sakulich, A. L., Keene, J. D., and Maraia, R. J. (2003). Differential phosphorylation and subcellular localization of La RNPs associated with precursor tRNAs and translation-related mRNAs. Mol. Cell 12, 1301-1307. doi: 10.1016/S1097-2765(03)00429-5.
    • (2003) Mol. Cell , vol.12 , pp. 1301-1307
    • Intine, R.V.1    Tenenbaum, S.A.2    Sakulich, A.L.3    Keene, J.D.4    Maraia, R.J.5
  • 25
    • 77955167841 scopus 로고    scopus 로고
    • Signatures of RNA binding proteins globally coupled to effective microRNA target sites
    • doi: 10.1101/gr.103259.109
    • Jacobsen, A., Wen, J., Marks, D. S., and Krogh, A. (2010). Signatures of RNA binding proteins globally coupled to effective microRNA target sites. Genome Res. 20, 1010-1019. doi: 10.1101/gr.103259.109.
    • (2010) Genome Res. , vol.20 , pp. 1010-1019
    • Jacobsen, A.1    Wen, J.2    Marks, D.S.3    Krogh, A.4
  • 26
    • 0035839136 scopus 로고    scopus 로고
    • Translating the Histone Code
    • doi: 10.1126/science.1063127
    • Jenuwein, T., and Allis, C. D. (2001). Translating the Histone Code. Science 293, 1074-1080. doi: 10.1126/science.1063127.
    • (2001) Science , vol.293 , pp. 1074-1080
    • Jenuwein, T.1    Allis, C.D.2
  • 27
    • 0037012881 scopus 로고    scopus 로고
    • Large-scale transcriptional activity in chromosomes 21 and 22
    • doi: 10.1126/science.1068597
    • Kapranov, P., Cawley, S. E., Drenkow, J., Bekiranov, S., Strausberg, R. L., Fodor, S. P. A., et al. (2002). Large-scale transcriptional activity in chromosomes 21 and 22. Science 296, 916-919. doi: 10.1126/science.1068597.
    • (2002) Science , vol.296 , pp. 916-919
    • Kapranov, P.1    Cawley, S.E.2    Drenkow, J.3    Bekiranov, S.4    Strausberg, R.L.5    Fodor, S.P.A.6
  • 28
    • 34250160256 scopus 로고    scopus 로고
    • RNA maps reveal new RNA classes and a possible function for pervasive transcription
    • doi: 10.1126/science.1138341
    • Kapranov, P., Cheng, J., Dike, S., Nix, D. A., Duttagupta, R., Willingham, A. T., et al. (2007a). RNA maps reveal new RNA classes and a possible function for pervasive transcription. Science 316, 1484-1488. doi: 10.1126/science.1138341.
    • (2007) Science , vol.316 , pp. 1484-1488
    • Kapranov, P.1    Cheng, J.2    Dike, S.3    Nix, D.A.4    Duttagupta, R.5    Willingham, A.T.6
  • 29
    • 78650292831 scopus 로고    scopus 로고
    • The majority of total nuclear-encoded non-ribosomal RNA in a human cell is "dark matter" un-annotated RNA
    • doi: 10.1186/1741-7007-8-149
    • Kapranov, P., Laurent, G. S., Raz, T., Ozsolak, F., Reynolds, C. P., Sorensen, P. H., et al. (2010). The majority of total nuclear-encoded non-ribosomal RNA in a human cell is "dark matter" un-annotated RNA. BMC Biol. 8:149. doi: 10.1186/1741-7007-8-149.
    • (2010) BMC Biol. , vol.8 , pp. 149
    • Kapranov, P.1    Laurent, G.S.2    Raz, T.3    Ozsolak, F.4    Reynolds, C.P.5    Sorensen, P.H.6
  • 30
    • 84870238817 scopus 로고    scopus 로고
    • Dark matter RNA: existence, function, and controversy
    • doi: 10.3389/fgene.2012.00060
    • Kapranov, P., and St. Laurent, G. (2012). Dark matter RNA: existence, function, and controversy. Front. Genet. 3:60. doi: 10.3389/fgene.2012.00060.
    • (2012) Front. Genet. , vol.3 , pp. 60
    • Kapranov, P.1    St Laurent, G.2
  • 31
    • 34249088350 scopus 로고    scopus 로고
    • Genome-wide transcription and the implications for genomic organization
    • doi: 10.1038/nrg2083
    • Kapranov, P., Willingham, A. T., and Gingeras, T. R. (2007b). Genome-wide transcription and the implications for genomic organization. Nat. Rev. Genet. 8, 413-423. doi: 10.1038/nrg2083.
    • (2007) Nat. Rev. Genet. , vol.8 , pp. 413-423
    • Kapranov, P.1    Willingham, A.T.2    Gingeras, T.R.3
  • 32
    • 48249086491 scopus 로고    scopus 로고
    • Biological clocks and the coordination theory of RNA operons and regulons
    • doi: 10.1101/sqb.2007.72.013
    • Keene, J. D. (2007). Biological clocks and the coordination theory of RNA operons and regulons. Cold Spring Harb. Symp. Quant. Biol. 72, 157-165. doi: 10.1101/sqb.2007.72.013.
    • (2007) Cold Spring Harb. Symp. Quant. Biol. , vol.72 , pp. 157-165
    • Keene, J.D.1
  • 33
    • 0036289532 scopus 로고    scopus 로고
    • Eukaryotic mRNPs may represent posttranscriptional operons
    • doi: 10.1016/S1097-2765(02)00559-2
    • Keene, J. D., and Tenenbaum, S. A. (2002). Eukaryotic mRNPs may represent posttranscriptional operons. Mol. Cell 9, 1161-1167. doi: 10.1016/S1097-2765(02)00559-2.
    • (2002) Mol. Cell , vol.9 , pp. 1161-1167
    • Keene, J.D.1    Tenenbaum, S.A.2
  • 34
    • 68149165414 scopus 로고    scopus 로고
    • HuR recruits let-7/RISC to repress c-Myc expression
    • doi: 10.1101/gad.1812509
    • Kim, H. H., Kuwano, Y., Srikantan, S., Lee, E. K., Martindale, J. L., and Gorospe, M. (2009). HuR recruits let-7/RISC to repress c-Myc expression. Genes Dev. 23, 1743-1748. doi: 10.1101/gad.1812509.
    • (2009) Genes Dev. , vol.23 , pp. 1743-1748
    • Kim, H.H.1    Kuwano, Y.2    Srikantan, S.3    Lee, E.K.4    Martindale, J.L.5    Gorospe, M.6
  • 35
    • 79959813870 scopus 로고    scopus 로고
    • A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins
    • doi: 10.1038/nmeth.1608
    • Kishore, S., Jaskiewicz, L., Burger, L., Hausser, J., Khorshid, M., and Zavolan, M. (2011). A quantitative analysis of CLIP methods for identifying binding sites of RNA-binding proteins. Nat. Methods 8, 559-564. doi: 10.1038/nmeth.1608.
    • (2011) Nat. Methods , vol.8 , pp. 559-564
    • Kishore, S.1    Jaskiewicz, L.2    Burger, L.3    Hausser, J.4    Khorshid, M.5    Zavolan, M.6
  • 36
    • 84866952775 scopus 로고    scopus 로고
    • Dark matter RNA: an intelligent scaffold for the dynamic regulation of the nuclear information landscape
    • doi: 10.3389/fgene.2012.00057
    • Laurent, G. S., Savva, Y. A., and Kapranov, P. (2012). Dark matter RNA: an intelligent scaffold for the dynamic regulation of the nuclear information landscape. Front. Genet. 3:57. doi: 10.3389/fgene.2012.00057.
    • (2012) Front. Genet. , vol.3 , pp. 57
    • Laurent, G.S.1    Savva, Y.A.2    Kapranov, P.3
  • 37
    • 84873867134 scopus 로고    scopus 로고
    • RNA targets and specificity of Staufen, a double-stranded RNA-binding protein in Caenorhabditis elegans
    • doi: 10.1074/jbc.M112.397349
    • LeGendre, J. B., Campbell, Z. T., Kroll-Conner, P., Anderson, P., Kimble, J., and Wickens, M. (2013). RNA targets and specificity of Staufen, a double-stranded RNA-binding protein in Caenorhabditis elegans. J. Biol. Chem. 288, 2532-2545. doi: 10.1074/jbc.M112.397349.
    • (2013) J. Biol. Chem. , vol.288 , pp. 2532-2545
    • LeGendre, J.B.1    Campbell, Z.T.2    Kroll-Conner, P.3    Anderson, P.4    Kimble, J.5    Wickens, M.6
  • 38
    • 29844453234 scopus 로고    scopus 로고
    • Topology of three-way junctions in folded RNAs
    • doi: 10.1261/rna.2208106
    • Lescoute, A., and Westhof, E. (2006). Topology of three-way junctions in folded RNAs. RNA (New York, N.Y.) 12, 83-93. doi: 10.1261/rna.2208106.
    • (2006) RNA (New York, N.Y.) , vol.12 , pp. 83-93
    • Lescoute, A.1    Westhof, E.2
  • 40
    • 34249316905 scopus 로고    scopus 로고
    • RNA-binding proteins: modular design for efficient function
    • doi: 10.1038/nrm2178
    • Lunde, B. M., Moore, C., and Varani, G. (2007). RNA-binding proteins: modular design for efficient function. Nat. Rev. Mol. Cell Biol. 8, 479-490. doi: 10.1038/nrm2178.
    • (2007) Nat. Rev. Mol. Cell Biol. , vol.8 , pp. 479-490
    • Lunde, B.M.1    Moore, C.2    Varani, G.3
  • 41
    • 79952768199 scopus 로고    scopus 로고
    • Masking the 5' terminal nucleotides of the hepatitis C virus genome by an unconventional microRNA-target RNA complex
    • doi: 10.1073/pnas.1012464108
    • Machlin, E. S., Sarnow, P., and Sagan, S. M. (2011). Masking the 5' terminal nucleotides of the hepatitis C virus genome by an unconventional microRNA-target RNA complex. Proc. Natl. Acad. Sci. U.S.A. 108, 3193-3198. doi: 10.1073/pnas.1012464108.
    • (2011) Proc. Natl. Acad. Sci. U.S.A. , vol.108 , pp. 3193-3198
    • Machlin, E.S.1    Sarnow, P.2    Sagan, S.M.3
  • 42
    • 0036898897 scopus 로고    scopus 로고
    • Histone mRNA expression: multiple levels of cell cycle regulation and important developmental consequences
    • doi: 10.1016/S0955-0674(02)00387-3
    • Marzluff, W. F., and Duronio, R. J. (2002). Histone mRNA expression: multiple levels of cell cycle regulation and important developmental consequences. Curr. Opin. Cell Biol. 14, 692-699. doi: 10.1016/S0955-0674(02)00387-3.
    • (2002) Curr. Opin. Cell Biol. , vol.14 , pp. 692-699
    • Marzluff, W.F.1    Duronio, R.J.2
  • 43
    • 54149091257 scopus 로고    scopus 로고
    • Metabolism and regulation of canonical histone mRNAs: life without a poly(A) tail
    • doi: 10.1038/nrg2438
    • Marzluff, W. F., Wagner, E. J., and Duronio, R. J. (2008). Metabolism and regulation of canonical histone mRNAs: life without a poly(A) tail. Nat. Rev. Genet. 9, 843-854. doi: 10.1038/nrg2438.
    • (2008) Nat. Rev. Genet. , vol.9 , pp. 843-854
    • Marzluff, W.F.1    Wagner, E.J.2    Duronio, R.J.3
  • 44
    • 0141867857 scopus 로고    scopus 로고
    • Challenging the dogma: the hidden layer of non-protein-coding RNAs in complex organisms
    • doi: 10.1002/bies.10332
    • Mattick, J. S. (2003). Challenging the dogma: the hidden layer of non-protein-coding RNAs in complex organisms. Bioessays 25, 930-939. doi: 10.1002/bies.10332.
    • (2003) Bioessays , vol.25 , pp. 930-939
    • Mattick, J.S.1
  • 45
    • 0031906394 scopus 로고    scopus 로고
    • The molecular biology and pyridoxine responsiveness of X-linked sideroblastic anaemia
    • May, A., and Bishop, D. F. (1998). The molecular biology and pyridoxine responsiveness of X-linked sideroblastic anaemia. Haematologica 83, 56-70.
    • (1998) Haematologica , vol.83 , pp. 56-70
    • May, A.1    Bishop, D.F.2
  • 46
    • 54049135560 scopus 로고    scopus 로고
    • Post-transcriptional gene regulation by HuR promotes a more tumorigenic phenotype
    • doi: 10.1038/onc.2008.215
    • Mazan-Mamczarz, K., Hagner, P. R., Corl, S., Srikantan, S., Wood, W. H., Becker, K. G., et al. (2008). Post-transcriptional gene regulation by HuR promotes a more tumorigenic phenotype. Oncogene 27, 6151-6163. doi: 10.1038/onc.2008.215.
    • (2008) Oncogene , vol.27 , pp. 6151-6163
    • Mazan-Mamczarz, K.1    Hagner, P.R.2    Corl, S.3    Srikantan, S.4    Wood, W.H.5    Becker, K.G.6
  • 47
    • 84880060145 scopus 로고    scopus 로고
    • Understanding the regulatory and transcriptional complexity of the genome through structure
    • doi: 10.1101/gr.156612.113
    • Mercer, T. R., and Mattick, J. S. (2013). Understanding the regulatory and transcriptional complexity of the genome through structure. Genome Res. 23, 1081-1088. doi: 10.1101/gr.156612.113.
    • (2013) Genome Res. , vol.23 , pp. 1081-1088
    • Mercer, T.R.1    Mattick, J.S.2
  • 48
    • 73949130070 scopus 로고    scopus 로고
    • Dissecting the expression dynamics of RNA-binding proteins in posttranscriptional regulatory networks
    • doi: 10.1073/pnas.0906940106
    • Mittal, N., Roy, N., Babu, M. M., and Janga, S. C. (2009). Dissecting the expression dynamics of RNA-binding proteins in posttranscriptional regulatory networks. Proc. Natl. Acad. Sci. U.S.A. 106, 20300-20305. doi: 10.1073/pnas.0906940106.
    • (2009) Proc. Natl. Acad. Sci. U.S.A. , vol.106 , pp. 20300-20305
    • Mittal, N.1    Roy, N.2    Babu, M.M.3    Janga, S.C.4
  • 49
    • 79960918737 scopus 로고    scopus 로고
    • Integrative regulatory mapping indicates that the RNA-binding protein HuR couples pre-mRNA processing and mRNA stability
    • doi: 10.1016/j.molcel.2011.06.007
    • Mukherjee, N., Corcoran, D. L., Nusbaum, J. D., Reid, D. W., Georgiev, S., Hafner, M., et al. (2011). Integrative regulatory mapping indicates that the RNA-binding protein HuR couples pre-mRNA processing and mRNA stability. Mol. Cell 43, 327-339. doi: 10.1016/j.molcel.2011.06.007.
    • (2011) Mol. Cell , vol.43 , pp. 327-339
    • Mukherjee, N.1    Corcoran, D.L.2    Nusbaum, J.D.3    Reid, D.W.4    Georgiev, S.5    Hafner, M.6
  • 50
    • 47549105524 scopus 로고    scopus 로고
    • Primary microRNA transcript retention at sites of transcription leads to enhanced microRNA production
    • doi: 10.1083/jcb.200803111
    • Pawlicki, J. M., and Steitz, J. A. (2008). Primary microRNA transcript retention at sites of transcription leads to enhanced microRNA production. J. Cell Biol. 182, 61-76. doi: 10.1083/jcb.200803111.
    • (2008) J. Cell Biol. , vol.182 , pp. 61-76
    • Pawlicki, J.M.1    Steitz, J.A.2
  • 51
    • 84872543206 scopus 로고    scopus 로고
    • A decade of riboswitches
    • doi: 10.1016/j.cell.2012.12.024
    • Serganov, A., and Nudler, E. (2013). A decade of riboswitches. Cell 152, 17-24. doi: 10.1016/j.cell.2012.12.024.
    • (2013) Cell , vol.152 , pp. 17-24
    • Serganov, A.1    Nudler, E.2
  • 52
    • 84894247159 scopus 로고    scopus 로고
    • RIPiT-Seq: a high-throughput approach for footprinting RNA:protein complexes
    • doi: 10.1016/j.ymeth.2013.09.013
    • Singh, G., Ricci, E. P., and Moore, M. J. (2014). RIPiT-Seq: a high-throughput approach for footprinting RNA:protein complexes. Methods 65, 320-332. doi: 10.1016/j.ymeth.2013.09.013.
    • (2014) Methods , vol.65 , pp. 320-332
    • Singh, G.1    Ricci, E.P.2    Moore, M.J.3
  • 54
    • 60849102145 scopus 로고    scopus 로고
    • Knockdown of SLBP results in nuclear retention of histone mRNA
    • doi: 10.1261/rna.1205409
    • Sullivan, K. D., Mullen, T. E., Marzluff, W. F., and Wagner, E. J. (2009). Knockdown of SLBP results in nuclear retention of histone mRNA. RNA 15, 459-472. doi: 10.1261/rna.1205409.
    • (2009) RNA , vol.15 , pp. 459-472
    • Sullivan, K.D.1    Mullen, T.E.2    Marzluff, W.F.3    Wagner, E.J.4
  • 55
    • 84872474666 scopus 로고    scopus 로고
    • Structure of histone mRNA stem-loop, human stem-loop binding protein and 3'hExo ternary complex
    • doi: 10.1126/science.1228705
    • Tan, D., Marzluff, W. F., Dominski, Z., and Tong, L. (2013). Structure of histone mRNA stem-loop, human stem-loop binding protein and 3'hExo ternary complex. Science 339, 318-321. doi: 10.1126/science.1228705.
    • (2013) Science , vol.339 , pp. 318-321
    • Tan, D.1    Marzluff, W.F.2    Dominski, Z.3    Tong, L.4
  • 56
    • 0034687794 scopus 로고    scopus 로고
    • Identifying mRNA subsets in messenger ribonucleoprotein complexes by using cDNA arrays
    • doi: 10.1073/pnas.97.26.14085
    • Tenenbaum, S. A., Carson, C. C., Lager, P. J., and Keene, J. D. (2000). Identifying mRNA subsets in messenger ribonucleoprotein complexes by using cDNA arrays. Proc. Natl. Acad. Sci. U.S.A. 97, 14085-14090. doi: 10.1073/pnas.97.26.14085.
    • (2000) Proc. Natl. Acad. Sci. U.S.A. , vol.97 , pp. 14085-14090
    • Tenenbaum, S.A.1    Carson, C.C.2    Lager, P.J.3    Keene, J.D.4
  • 57
    • 84890281265 scopus 로고    scopus 로고
    • Recognition modes of RNA tetraloops and tetraloop-like motifs by RNA-binding proteins
    • doi: 10.1002/wrna.1196
    • Thapar, R., Denmon, A. P., and Nikonowicz, E. P. (2014). Recognition modes of RNA tetraloops and tetraloop-like motifs by RNA-binding proteins. Wiley Interdiscip. Rev. RNA 5, 49-67. doi: 10.1002/wrna.1196.
    • (2014) Wiley Interdiscip. Rev. RNA , vol.5 , pp. 49-67
    • Thapar, R.1    Denmon, A.P.2    Nikonowicz, E.P.3
  • 58
    • 36749026906 scopus 로고    scopus 로고
    • Switching from repression to activation: microRNAs can up-regulate translation
    • doi: 10.1126/science.1149460
    • Vasudevan, S., Tong, Y., and Steitz, J. A. (2007). Switching from repression to activation: microRNAs can up-regulate translation. Science 318, 1931-1934. doi: 10.1126/science.1149460.
    • (2007) Science , vol.318 , pp. 1931-1934
    • Vasudevan, S.1    Tong, Y.2    Steitz, J.A.3
  • 59
    • 51149108520 scopus 로고    scopus 로고
    • C-terminal deletions in the ALAS2 gene lead to gain of function and cause X-linked dominant protoporphyria without anemia or iron overload
    • doi: 10.1016/j.ajhg.2008.08.003
    • Whatley, S. D., Ducamp, S., Gouya, L., Grandchamp, B., Beaumont, C., Badminton, M. N., et al. (2008). C-terminal deletions in the ALAS2 gene lead to gain of function and cause X-linked dominant protoporphyria without anemia or iron overload. Am. J. Hum. Genet. 83, 408-414. doi: 10.1016/j.ajhg.2008.08.003.
    • (2008) Am. J. Hum. Genet. , vol.83 , pp. 408-414
    • Whatley, S.D.1    Ducamp, S.2    Gouya, L.3    Grandchamp, B.4    Beaumont, C.5    Badminton, M.N.6
  • 60
    • 84878731889 scopus 로고    scopus 로고
    • Nucleolin mediates microRNA-directed CSF-1 mRNA deadenylation, but increases translation of CSF-1 mRNA
    • doi: 10.1074/mcp.M112.025288
    • Woo, H.-H., Baker, T., Laszlo, C., and Chambers, S. K. (2013). Nucleolin mediates microRNA-directed CSF-1 mRNA deadenylation, but increases translation of CSF-1 mRNA. Mol. Cell Proteomics 12, 1661-1677. doi: 10.1074/mcp.M112.025288.
    • (2013) Mol. Cell Proteomics , vol.12 , pp. 1661-1677
    • Woo, H.-H.1    Baker, T.2    Laszlo, C.3    Chambers, S.K.4
  • 61
    • 84869988685 scopus 로고    scopus 로고
    • MS2-TRAP (MS2-tagged RNA affinity purification): tagging RNA to identify associated miRNAs
    • doi: 10.1016/j.ymeth.2012.07.004
    • Yoon, J.-H., Srikantan, S., and Gorospe, M. (2012). MS2-TRAP (MS2-tagged RNA affinity purification): tagging RNA to identify associated miRNAs. Methods 58, 81-87. doi: 10.1016/j.ymeth.2012.07.004.
    • (2012) Methods , vol.58 , pp. 81-87
    • Yoon, J.-H.1    Srikantan, S.2    Gorospe, M.3
  • 62
    • 84859882591 scopus 로고    scopus 로고
    • Interaction of the histone mRNA hairpin with stem-loop binding protein (SLBP) and regulation of the SLBP-RNA complex by phosphorylation and proline isomerization
    • doi: 10.1021/bi2018255
    • Zhang, M., Lam, T. T., Tonelli, M., Marzluff, W. F., and Thapar, R. (2012). Interaction of the histone mRNA hairpin with stem-loop binding protein (SLBP) and regulation of the SLBP-RNA complex by phosphorylation and proline isomerization. Biochemistry 51, 3215-3231. doi: 10.1021/bi2018255.
    • (2012) Biochemistry , vol.51 , pp. 3215-3231
    • Zhang, M.1    Lam, T.T.2    Tonelli, M.3    Marzluff, W.F.4    Thapar, R.5


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.