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Volumn 3, Issue 5, 2014, Pages 286-297

Biological noise abatement: Coordinating the responses of autonomous bacteria in a synthetic biofilm to a fluctuating environment using a stochastic bistable switch

Author keywords

autoregulation; bistability; stochastic noise; synchronization; synthetic biofilm; synthetic biology

Indexed keywords

ARTICLE; AUTOREGULATION; BACTERIAL GENE; BIOFILM; CELL DIVISION; CELL METABOLISM; CONTROLLED STUDY; EPIGENETICS; GENE REGULATORY NETWORK; LUX GENE; MICROENVIRONMENT; MOLECULAR MECHANICS; MOLECULE; NOISE REDUCTION; NONHUMAN; OPERON; POSITIVE FEEDBACK; PRIORITY JOURNAL; PROTEIN EXPRESSION; QUORUM SENSING; SENSITIVITY ANALYSIS; SIGNAL PROCESSING; STOCHASTIC MODEL; TECHNOLOGY; BACTERIA; BIOLOGICAL MODEL; CYTOLOGY; HOMEOSTASIS; METABOLISM; PHYSIOLOGY; SIGNAL TRANSDUCTION; STATISTICS; SYNTHETIC BIOLOGY;

EID: 84900871692     PISSN: None     EISSN: 21615063     Source Type: Journal    
DOI: 10.1021/sb400052f     Document Type: Article
Times cited : (5)

References (49)
  • 1
    • 0034443286 scopus 로고    scopus 로고
    • Microbial biofilms: From Ecology to Molecular Genetics
    • Davey, M. E. and OToole, G. A. (2000) Microbial biofilms: From Ecology to Molecular Genetics Microbiol. Mol. Biol. Rev. 64 (4) 847-867
    • (2000) Microbiol. Mol. Biol. Rev. , vol.64 , Issue.4 , pp. 847-867
    • Davey, M.E.1    Otoole, G.A.2
  • 2
    • 34247842931 scopus 로고    scopus 로고
    • Microbial biofilms: E pluribus unum
    • Nobile, C. J. and Mitchell, A. P. (2007) Microbial biofilms: e pluribus unum Curr. Biol. 17, R349-R353
    • (2007) Curr. Biol. , vol.17
    • Nobile, C.J.1    Mitchell, A.P.2
  • 4
    • 0035077009 scopus 로고    scopus 로고
    • Riddle of biofilm resistance
    • Lewis, K. (2001) Riddle of biofilm resistance Antimicrob. Agents Chemother. 45, 999-1007
    • (2001) Antimicrob. Agents Chemother. , vol.45 , pp. 999-1007
    • Lewis, K.1
  • 5
    • 33744737587 scopus 로고    scopus 로고
    • Controlling biofilms of Gram-positive pathogenic bacteria
    • Abraham, W.-R. (2006) Controlling biofilms of Gram-positive pathogenic bacteria Curr. Med. Chem. 13, 1509-1524
    • (2006) Curr. Med. Chem. , vol.13 , pp. 1509-1524
    • Abraham, W.-R.1
  • 6
    • 0035675837 scopus 로고    scopus 로고
    • Regulation of gene expression by cell-to-cell communication: Acyl-homoserine lactone quorum sensing
    • Fuqua, C., Parsek, M. R., and Greenberg, E. P. (2001) Regulation of gene expression by cell-to-cell communication: acyl-homoserine lactone quorum sensing Annu. Rev. Genet. 35, 439-468
    • (2001) Annu. Rev. Genet. , vol.35 , pp. 439-468
    • Fuqua, C.1    Parsek, M.R.2    Greenberg, E.P.3
  • 7
    • 4644300239 scopus 로고    scopus 로고
    • Quorum sensing in biofilms: Gossip in slime city
    • in (, Eds.) pp, American Society for Microbiology, Washington, DC.-140
    • Hentzer, M., Givskov, M., and Eberl, L. (2004) Quorum sensing in biofilms: gossip in slime city, in Microbial Biofilms (Ghannoum, M. and OToole, G. A., Eds.) pp 118-140, American Society for Microbiology, Washington, DC.
    • (2004) Microbial Biofilms , pp. 118
    • Hentzer, M.1    Givskov, M.2    Eberl, L.3    Ghannoum, M.4    Otoole, G.A.5
  • 8
    • 3843091794 scopus 로고    scopus 로고
    • Chemical communication in proteobacteria: Biochemical and structural studies of signal synthases and receptors required for intercellular signalling
    • Pappas, K. M., Weingart, C. L., and Winans, S. C. (2004) Chemical communication in proteobacteria: biochemical and structural studies of signal synthases and receptors required for intercellular signalling Mol. Microbiol. 53, 755-769
    • (2004) Mol. Microbiol. , vol.53 , pp. 755-769
    • Pappas, K.M.1    Weingart, C.L.2    Winans, S.C.3
  • 10
    • 0033862847 scopus 로고    scopus 로고
    • Bacterial quorum sensing in pathogenic relationships
    • De Kievit, T. R. and Iglewski, B. H. (2000) Bacterial quorum sensing in pathogenic relationships Infect. Immun. 68, 4839-4849
    • (2000) Infect. Immun. , vol.68 , pp. 4839-4849
    • De Kievit, T.R.1    Iglewski, B.H.2
  • 11
    • 62649083160 scopus 로고    scopus 로고
    • Jamming prokaryotic cell-to-cell communications in a model biofilm
    • Timp, W., Mirsaidov, U., Matsudaira, P., and Timp, G. (2009) Jamming prokaryotic cell-to-cell communications in a model biofilm Lab Chip 9, 925-934
    • (2009) Lab Chip , vol.9 , pp. 925-934
    • Timp, W.1    Mirsaidov, U.2    Matsudaira, P.3    Timp, G.4
  • 12
    • 0036685473 scopus 로고    scopus 로고
    • Is quorum sensing a side effect of diffusion sensing?
    • Redfield, R. (2002) Is quorum sensing a side effect of diffusion sensing? Trends Microbiol. 10, 365-370
    • (2002) Trends Microbiol. , vol.10 , pp. 365-370
    • Redfield, R.1
  • 14
    • 33846155599 scopus 로고    scopus 로고
    • The effect of the chemical, biological, and physical environment on quorum sensing in structured microbial communities
    • Horswill, A. R., Stoodley, P., Stewart, P. S., and Parsek, M. R. (2007) The effect of the chemical, biological, and physical environment on quorum sensing in structured microbial communities Anal. Bioanal. Chem. 387, 371-380
    • (2007) Anal. Bioanal. Chem. , vol.387 , pp. 371-380
    • Horswill, A.R.1    Stoodley, P.2    Stewart, P.S.3    Parsek, M.R.4
  • 15
    • 15544388848 scopus 로고    scopus 로고
    • Noise propagation in gene networks
    • Pedraza, J. M. and van Oudenaarden, A. (2005) Noise propagation in gene networks Science 307, 1965-1969
    • (2005) Science , vol.307 , pp. 1965-1969
    • Pedraza, J.M.1    Van Oudenaarden, A.2
  • 16
    • 25444468618 scopus 로고    scopus 로고
    • Noise in gene expression: Origins, consequences, and control
    • Raser, J. M. and OShea, E. K. (2005) Noise in gene expression: Origins, consequences, and control Science 309, 2010-2013
    • (2005) Science , vol.309 , pp. 2010-2013
    • Raser, J.M.1    Oshea, E.K.2
  • 17
    • 34147131574 scopus 로고    scopus 로고
    • From fluctuations to phenotypes: The physiology of noise
    • Samoilov, M. S., Price, G., and Arkin, A. P. (2006) From fluctuations to phenotypes: The physiology of noise Sci. STKE re17
    • (2006) Sci. STKE , pp. 17
    • Samoilov, M.S.1    Price, G.2    Arkin, A.P.3
  • 18
    • 2942555282 scopus 로고    scopus 로고
    • Stochastic gene expression in fluctuating environments
    • Thattai, M. and van Oudenaarden, A. (2004) Stochastic gene expression in fluctuating environments Genetics 167, 523-530
    • (2004) Genetics , vol.167 , pp. 523-530
    • Thattai, M.1    Van Oudenaarden, A.2
  • 19
    • 84884321761 scopus 로고    scopus 로고
    • Epigenetic memory emerging from integrated transcription bursts
    • Kurz, V., Nelson, E., Perry, N., Timp, W., and Timp, G. (2013) Epigenetic memory emerging from integrated transcription bursts Biophys. J 105, 1526-1532
    • (2013) Biophys. J , vol.105 , pp. 1526-1532
    • Kurz, V.1    Nelson, E.2    Perry, N.3    Timp, W.4    Timp, G.5
  • 20
    • 57749185093 scopus 로고    scopus 로고
    • Robust and sensitive control of a quorum-sensing circuit by two interlocked feedback loops
    • Williams, J. W., Cui, X., Levchenko, A., and Stevens, A. M. (2008) Robust and sensitive control of a quorum-sensing circuit by two interlocked feedback loops Mol. Syst. Biol. 4, 234
    • (2008) Mol. Syst. Biol. , vol.4 , pp. 234
    • Williams, J.W.1    Cui, X.2    Levchenko, A.3    Stevens, A.M.4
  • 21
    • 0031746834 scopus 로고    scopus 로고
    • New unstable variants of green fluorescent protein for studies of transient gene expression in bacteria
    • Andersen, J. B., Sternberg, C., Poulsen, L. K., Bjørn, S. P., Givskov, M., and Molin, S. (1998) New unstable variants of green fluorescent protein for studies of transient gene expression in bacteria Appl. Environ. Microbiol. 64, 2240-2246
    • (1998) Appl. Environ. Microbiol. , vol.64 , pp. 2240-2246
    • Andersen, J.B.1    Sternberg, C.2    Poulsen, L.K.3    Bjørn, S.P.4    Givskov, M.5    Molin, S.6
  • 26
    • 36849005857 scopus 로고    scopus 로고
    • Engineered bidirectional communication mediates a consensus in a microbial biofilm consortium
    • Brenner, K., Karig, D. K., Weiss, R., and Arnold, F. H. (2007) Engineered bidirectional communication mediates a consensus in a microbial biofilm consortium Proc. Natl. Acad. Sci. U.S.A. 104, 17300-17304
    • (2007) Proc. Natl. Acad. Sci. U.S.A. , vol.104 , pp. 17300-17304
    • Brenner, K.1    Karig, D.K.2    Weiss, R.3    Arnold, F.H.4
  • 27
    • 32044445314 scopus 로고    scopus 로고
    • Systems analysis of a quorum sensing network: Design constraints imposed by the functional requirements, network topology and kinetic constants
    • Goryachev, A. B., Toh, D. J., and Lee, T. (2006) Systems analysis of a quorum sensing network: Design constraints imposed by the functional requirements, network topology and kinetic constants Biosystems 83, 178-187
    • (2006) Biosystems , vol.83 , pp. 178-187
    • Goryachev, A.B.1    Toh, D.J.2    Lee, T.3
  • 28
    • 61549095805 scopus 로고    scopus 로고
    • Comparison of deterministic and stochastic models of the lac operon genetic network
    • Stamatakis, M. and Mantzaris, N. V. (2009) Comparison of deterministic and stochastic models of the lac operon genetic network Biophys. J. 96, 887-906
    • (2009) Biophys. J. , vol.96 , pp. 887-906
    • Stamatakis, M.1    Mantzaris, N.V.2
  • 29
    • 34548575649 scopus 로고    scopus 로고
    • Single protein production (SPP) system in Escherichia coli
    • Suzuki, M., Mao, L., and Inouye, M. (2007) Single protein production (SPP) system in Escherichia coli Nat. Protoc. 2, 1802-1810
    • (2007) Nat. Protoc. , vol.2 , pp. 1802-1810
    • Suzuki, M.1    Mao, L.2    Inouye, M.3
  • 30
    • 33645429016 scopus 로고
    • Exact stochastic simulation of coupled chemical reactions
    • Gillespie, D. T. (1977) Exact stochastic simulation of coupled chemical reactions J. Phys. Chem. 81, 2340-2361
    • (1977) J. Phys. Chem. , vol.81 , pp. 2340-2361
    • Gillespie, D.T.1
  • 31
    • 65249089105 scopus 로고    scopus 로고
    • Effect of cross-linking on the diffusion of water, ions, and small molecules in hydrogels
    • Wu, Y., Joseph, S., and Aluru, N. R. (2009) Effect of cross-linking on the diffusion of water, ions, and small molecules in hydrogels J. Phys. Chem. B 113, 3512-3520
    • (2009) J. Phys. Chem. B , vol.113 , pp. 3512-3520
    • Wu, Y.1    Joseph, S.2    Aluru, N.R.3
  • 33
    • 34248187193 scopus 로고    scopus 로고
    • Ligand-receptor binding on nanoparticle-stabilized liposome surfaces
    • Zhang, L., Dammann, K., Baeb, K. C., and Granick, S. (2007) Ligand-receptor binding on nanoparticle-stabilized liposome surfaces Soft Matter 3, 551-553
    • (2007) Soft Matter , vol.3 , pp. 551-553
    • Zhang, L.1    Dammann, K.2    Baeb, K.C.3    Granick, S.4
  • 34
    • 0031548743 scopus 로고    scopus 로고
    • From phase to lag synchronization in coupled chaotic oscillators
    • Rosenblum, M. G., Pikovsky, A. S., and Kurths, J. (1997) From phase to lag synchronization in coupled chaotic oscillators Phys. Rev. Lett. 78, 4193-4196
    • (1997) Phys. Rev. Lett. , vol.78 , pp. 4193-4196
    • Rosenblum, M.G.1    Pikovsky, A.S.2    Kurths, J.3
  • 35
    • 0037466509 scopus 로고    scopus 로고
    • Sensitivity analysis of stoichiometric networks: An extension of metabolic control analysis to non-steady state trajectories
    • Ingalls, B. P. and Sauro, H. M. (2003) Sensitivity analysis of stoichiometric networks: an extension of metabolic control analysis to non-steady state trajectories J. Theor. Biol. 222, 23-36
    • (2003) J. Theor. Biol. , vol.222 , pp. 23-36
    • Ingalls, B.P.1    Sauro, H.M.2
  • 40
    • 84900861428 scopus 로고    scopus 로고
    • Laser-guided assembly of living cell microarrays
    • Akselrod, G., Timp, W., Timp, K., Timp, R., and Timp, G. (2006) Laser-guided assembly of living cell microarrays Biophys. J. 91, 3456-3474
    • (2006) Biophys. J. , vol.91 , pp. 3456-3474
    • Akselrod, G.1    Timp, W.2    Timp, K.3    Timp, R.4    Timp, G.5
  • 42
    • 0001389945 scopus 로고
    • Enzyme induction as an all-or-none phenomenon
    • Novick, A. and Weiner, M. (1957) Enzyme induction as an all-or-none phenomenon Proc. Natl. Acad. Sci. U.S.A. 43, 553-566
    • (1957) Proc. Natl. Acad. Sci. U.S.A. , vol.43 , pp. 553-566
    • Novick, A.1    Weiner, M.2
  • 46
    • 0037078982 scopus 로고    scopus 로고
    • Control, exploitation and tolerance of intracellular noise
    • Rao, C. V., Wolf, D. M., and Arkin, A. P. (2002) Control, exploitation and tolerance of intracellular noise Nature 420, 231-237
    • (2002) Nature , vol.420 , pp. 231-237
    • Rao, C.V.1    Wolf, D.M.2    Arkin, A.P.3
  • 47
    • 34447564221 scopus 로고    scopus 로고
    • Look whos talking: Communication and quorum sensing in the bacterial world
    • Williams, P., Winzer, K., Chan, W. C., and Cámara, M. (2007) Look whos talking: communication and quorum sensing in the bacterial world Philos. Trans. R. Soc., B 362, 1119-1134
    • (2007) Philos. Trans. R. Soc., B , vol.362 , pp. 1119-1134
    • Williams, P.1    Winzer, K.2    Chan, W.C.3    Cámara, M.4
  • 48
    • 0026732105 scopus 로고
    • Molecular biology of methanogens
    • Reeve, J. N. (1992) Molecular biology of methanogens Annu. Rev. Microbiol. 46, 165-191
    • (1992) Annu. Rev. Microbiol. , vol.46 , pp. 165-191
    • Reeve, J.N.1


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