메뉴 건너뛰기




Volumn 122, Issue , 2014, Pages 437-461

Dissecting ribosome assembly and transport in budding yeast

Author keywords

Budding yeast; Fluorescence in situ hybridization; Heterokaryon assay; Nuclear export; Ribosome biogenesis; Ribosome export; Sucrose sedimentation; TAP purification

Indexed keywords

CELL RECEPTOR; EXPORTIN 1 PROTEIN; GREEN FLUORESCENT PROTEIN; KARYOPHERIN; RIBOSOME RNA;

EID: 84900860607     PISSN: 0091679X     EISSN: None     Source Type: Book Series    
DOI: 10.1016/B978-0-12-417160-2.00020-5     Document Type: Chapter
Times cited : (12)

References (42)
  • 2
    • 84871887778 scopus 로고    scopus 로고
    • The conserved Bud20 zinc finger protein is a new component of the ribosomal 60S subunit export machinery
    • Baßler J., Klein I., Schmidt C., Kallas M., Thomson E., Wagner M.A., et al. The conserved Bud20 zinc finger protein is a new component of the ribosomal 60S subunit export machinery. Molecular and Cellular Biology 2012, 32(24):4898-4912.
    • (2012) Molecular and Cellular Biology , vol.32 , Issue.24 , pp. 4898-4912
    • Baßler, J.1    Klein, I.2    Schmidt, C.3    Kallas, M.4    Thomson, E.5    Wagner, M.A.6
  • 3
    • 33646186286 scopus 로고    scopus 로고
    • FLIPing heterokaryons to analyze nucleo-cytoplasmic shuttling of yeast proteins
    • Belaya K., Tollervey D., Koš M. FLIPing heterokaryons to analyze nucleo-cytoplasmic shuttling of yeast proteins. RNA 2006, 12(5):921-930.
    • (2006) RNA , vol.12 , Issue.5 , pp. 921-930
    • Belaya, K.1    Tollervey, D.2    Koš, M.3
  • 4
    • 34548292860 scopus 로고    scopus 로고
    • Arx1 functions as an unorthodox nuclear export receptor for the 60S preribosomal subunit
    • Bradatsch B., Katahira J., Kowalinski E., Bange G., Yao W., Sekimoto T., et al. Arx1 functions as an unorthodox nuclear export receptor for the 60S preribosomal subunit. Molecular Cell 2007, 27(5):767-779.
    • (2007) Molecular Cell , vol.27 , Issue.5 , pp. 767-779
    • Bradatsch, B.1    Katahira, J.2    Kowalinski, E.3    Bange, G.4    Yao, W.5    Sekimoto, T.6
  • 8
    • 0035027807 scopus 로고    scopus 로고
    • Nuclear export of 60S ribosomal subunits depends on Xpo1p and requires a nuclear export sequence-containing factor, Nmd3p, that associates with the large subunit protein Rpl10p
    • Gadal O., Strauß D., Kessl J., Trumpower B., Tollervey D., Hurt E. Nuclear export of 60S ribosomal subunits depends on Xpo1p and requires a nuclear export sequence-containing factor, Nmd3p, that associates with the large subunit protein Rpl10p. Molecular and Cellular Biology 2001, 21(10):3405-3415.
    • (2001) Molecular and Cellular Biology , vol.21 , Issue.10 , pp. 3405-3415
    • Gadal, O.1    Strauß, D.2    Kessl, J.3    Trumpower, B.4    Tollervey, D.5    Hurt, E.6
  • 9
    • 18544371820 scopus 로고    scopus 로고
    • 90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors
    • Grandi P., Rybin V., Baßler J., Petfalski E., Strauß D., Marzioch M., et al. 90S pre-ribosomes include the 35S pre-rRNA, the U3 snoRNP, and 40S subunit processing factors but predominantly lack 60S synthesis factors. Molecular Cell 2002, 10(1):105-115.
    • (2002) Molecular Cell , vol.10 , Issue.1 , pp. 105-115
    • Grandi, P.1    Rybin, V.2    Baßler, J.3    Petfalski, E.4    Strauß, D.5    Marzioch, M.6
  • 10
    • 0034175551 scopus 로고    scopus 로고
    • An aminoacylation-dependent nuclear tRNA export pathway in yeast
    • Grosshans H., Hurt E., Simos G. An aminoacylation-dependent nuclear tRNA export pathway in yeast. Genes & Development 2000, 14(7):830-840.
    • (2000) Genes & Development , vol.14 , Issue.7 , pp. 830-840
    • Grosshans, H.1    Hurt, E.2    Simos, G.3
  • 11
    • 80053563927 scopus 로고    scopus 로고
    • The mRNA export factor Npl3 mediates the nuclear export of large ribosomal subunits
    • Hackmann A., Gross T., Baierlein C., Krebber H. The mRNA export factor Npl3 mediates the nuclear export of large ribosomal subunits. EMBO Reports 2011, 12(10):1024-1031.
    • (2011) EMBO Reports , vol.12 , Issue.10 , pp. 1024-1031
    • Hackmann, A.1    Gross, T.2    Baierlein, C.3    Krebber, H.4
  • 12
    • 0034722372 scopus 로고    scopus 로고
    • Nmd3p is a Crm1p-dependent adapter protein for nuclear export of the large ribosomal subunit
    • Ho J.H.-N., Kallstrom G., Johnson A.W. Nmd3p is a Crm1p-dependent adapter protein for nuclear export of the large ribosomal subunit. Journal of Cell Biology 2000, 151(5):1057-1066.
    • (2000) Journal of Cell Biology , vol.151 , Issue.5 , pp. 1057-1066
    • Ho, J.H.-N.1    Kallstrom, G.2    Johnson, A.W.3
  • 14
    • 0033535052 scopus 로고    scopus 로고
    • A novel in vivo assay reveals inhibition of ribosomal nuclear export in Ran-cycle and nucleoporin mutants
    • Hurt E., Hannus S., Schmelzl B., Lau D., Tollervey D., Simos G. A novel in vivo assay reveals inhibition of ribosomal nuclear export in Ran-cycle and nucleoporin mutants. Journal of Cell Biology 1999, 144(3):389-401.
    • (1999) Journal of Cell Biology , vol.144 , Issue.3 , pp. 389-401
    • Hurt, E.1    Hannus, S.2    Schmelzl, B.3    Lau, D.4    Tollervey, D.5    Simos, G.6
  • 15
    • 2342631284 scopus 로고    scopus 로고
    • The Carboxy-Terminal Extension of Yeast Ribosomal Protein S14 Is Necessary for Maturation of 43S Preribosomes
    • Jakovljevic J., de Mayolo P.A., Miles T.D., Nguyen T.M.-L., Léger-Silvestre I., Gas N., et al. The Carboxy-Terminal Extension of Yeast Ribosomal Protein S14 Is Necessary for Maturation of 43S Preribosomes. Molecular Cell 2004, 14(3):331-342.
    • (2004) Molecular Cell , vol.14 , Issue.3 , pp. 331-342
    • Jakovljevic, J.1    de Mayolo, P.A.2    Miles, T.D.3    Nguyen, T.M.-L.4    Léger-Silvestre, I.5    Gas, N.6
  • 16
    • 4444271170 scopus 로고    scopus 로고
    • A versatile toolbox for PCR-based tagging of yeast genes: New fluorescent proteins, more markers and promoter substitution cassettes
    • Janke C., Magiera M.M., Rathfelder N., Taxis C., Reber S., Maekawa H., et al. A versatile toolbox for PCR-based tagging of yeast genes: New fluorescent proteins, more markers and promoter substitution cassettes. Yeast 2004, 21(11):947-962.
    • (2004) Yeast , vol.21 , Issue.11 , pp. 947-962
    • Janke, C.1    Magiera, M.M.2    Rathfelder, N.3    Taxis, C.4    Reber, S.5    Maekawa, H.6
  • 17
    • 70349924070 scopus 로고    scopus 로고
    • Yvh1 is required for a late maturation step in the 60S biogenesis pathway
    • Kemmler S., Occhipinti L., Veisu M., Panse V.G. Yvh1 is required for a late maturation step in the 60S biogenesis pathway. Journal of Cell Biology 2009, 186(6):863-880.
    • (2009) Journal of Cell Biology , vol.186 , Issue.6 , pp. 863-880
    • Kemmler, S.1    Occhipinti, L.2    Veisu, M.3    Panse, V.G.4
  • 19
    • 0016104141 scopus 로고
    • Analysis of the protein composition of yeast ribosomal subunits by two-dimensional polyacrylamide gel electrophoresis
    • Kruiswijk T., Planta R.J. Analysis of the protein composition of yeast ribosomal subunits by two-dimensional polyacrylamide gel electrophoresis. Molecular Biology Reports 1974, 1(7):409-415.
    • (1974) Molecular Biology Reports , vol.1 , Issue.7 , pp. 409-415
    • Kruiswijk, T.1    Planta, R.J.2
  • 20
    • 0031820288 scopus 로고    scopus 로고
    • Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae
    • Longtine M.S., McKenzie Iii A., Demarini D.J., Shah N.G., Wach A., Brachat A., et al. Additional modules for versatile and economical PCR-based gene deletion and modification in Saccharomyces cerevisiae. Yeast 1998, 14(10):953-961.
    • (1998) Yeast , vol.14 , Issue.10 , pp. 953-961
    • Longtine, M.S.1    McKenzie Iii, A.2    Demarini, D.J.3    Shah, N.G.4    Wach, A.5    Brachat, A.6
  • 21
    • 0037423265 scopus 로고    scopus 로고
    • A Noc complex specifically involved in the formation and nuclear export of ribosomal 40S subunits
    • Milkereit P., Strauss D., Bassler J., Gadal O., Kühn H., Schütz S., et al. A Noc complex specifically involved in the formation and nuclear export of ribosomal 40S subunits. Journal of Biological Chemistry 2003, 278(6):4072-4081.
    • (2003) Journal of Biological Chemistry , vol.278 , Issue.6 , pp. 4072-4081
    • Milkereit, P.1    Strauss, D.2    Bassler, J.3    Gadal, O.4    Kühn, H.5    Schütz, S.6
  • 22
    • 0033567356 scopus 로고    scopus 로고
    • Nuclear export of the small ribosomal subunit requires the Ran-GTPase cycle and certain nucleoporins
    • Moy T.I., Silver P.A. Nuclear export of the small ribosomal subunit requires the Ran-GTPase cycle and certain nucleoporins. Genes & Development 1999, 13(16):2118-2133.
    • (1999) Genes & Development , vol.13 , Issue.16 , pp. 2118-2133
    • Moy, T.I.1    Silver, P.A.2
  • 23
    • 18644372079 scopus 로고    scopus 로고
    • 60S pre-ribosome formation viewed from assembly in the nucleolus until export to the cytoplasm
    • Nissan T.A., Baßler J., Petfalski E., Tollervey D., Hurt E. 60S pre-ribosome formation viewed from assembly in the nucleolus until export to the cytoplasm. EMBO Journal 2002, 21(20):5539-5547.
    • (2002) EMBO Journal , vol.21 , Issue.20 , pp. 5539-5547
    • Nissan, T.A.1    Baßler, J.2    Petfalski, E.3    Tollervey, D.4    Hurt, E.5
  • 24
    • 3242694353 scopus 로고    scopus 로고
    • A pre-ribosome with a tadpole-like structure functions in ATP-dependent maturation of 60S subunits
    • Nissan T.A., Galani K., Maco B., Tollervey D., Aebi U., Hurt E. A pre-ribosome with a tadpole-like structure functions in ATP-dependent maturation of 60S subunits. Molecular Cell 2004, 15(2):295-301.
    • (2004) Molecular Cell , vol.15 , Issue.2 , pp. 295-301
    • Nissan, T.A.1    Galani, K.2    Maco, B.3    Tollervey, D.4    Aebi, U.5    Hurt, E.6
  • 25
    • 0942301279 scopus 로고    scopus 로고
    • A pre-ribosome-associated HEAT-repeat protein is required for export of both ribosomal subunits
    • Oeffinger M., Dlakić M., Tollervey D. A pre-ribosome-associated HEAT-repeat protein is required for export of both ribosomal subunits. Genes & Development 2004, 18(2):196-209.
    • (2004) Genes & Development , vol.18 , Issue.2 , pp. 196-209
    • Oeffinger, M.1    Dlakić, M.2    Tollervey, D.3
  • 26
    • 80755152946 scopus 로고    scopus 로고
    • Getting ready to translate: Cytoplasmic maturation of eukaryotic ribosomes
    • Panse V.G. Getting ready to translate: Cytoplasmic maturation of eukaryotic ribosomes. CHIMIA International Journal for Chemistry 2011, 65(10):765-769.
    • (2011) CHIMIA International Journal for Chemistry , vol.65 , Issue.10 , pp. 765-769
    • Panse, V.G.1
  • 27
    • 77952583684 scopus 로고    scopus 로고
    • Maturation of eukaryotic ribosomes: Acquisition of functionality
    • Panse V.G., Johnson A.W. Maturation of eukaryotic ribosomes: Acquisition of functionality. Trends in Biochemical Sciences 2010, 35(5):260-266.
    • (2010) Trends in Biochemical Sciences , vol.35 , Issue.5 , pp. 260-266
    • Panse, V.G.1    Johnson, A.W.2
  • 28
    • 67650088239 scopus 로고    scopus 로고
    • Functional redundancy of yeast proteins Reh1 and Rei1 in cytoplasmic 60S subunit maturation
    • Parnell K.M., Bass B.L. Functional redundancy of yeast proteins Reh1 and Rei1 in cytoplasmic 60S subunit maturation. Molecular and Cellular Biology 2009, 29(14):4014-4023.
    • (2009) Molecular and Cellular Biology , vol.29 , Issue.14 , pp. 4014-4023
    • Parnell, K.M.1    Bass, B.L.2
  • 29
    • 70449656291 scopus 로고    scopus 로고
    • RNA helicase Prp43 and its co-factor Pfa1 promote 20 to 18 S rRNA processing catalyzed by the endonuclease Nob1
    • Pertschy B., Schneider C., Gnädig M., Schäfer T., Tollervey D., Hurt E. RNA helicase Prp43 and its co-factor Pfa1 promote 20 to 18 S rRNA processing catalyzed by the endonuclease Nob1. Journal of Biological Chemistry 2009, 284(50):35079-35091.
    • (2009) Journal of Biological Chemistry , vol.284 , Issue.50 , pp. 35079-35091
    • Pertschy, B.1    Schneider, C.2    Gnädig, M.3    Schäfer, T.4    Tollervey, D.5    Hurt, E.6
  • 30
    • 0034841844 scopus 로고    scopus 로고
    • The tandem affinity purification (TAP) method: A general procedure of protein complex purification
    • Puig O., Caspary F., Rigaut G., Rutz B., Bouveret E., Bragado-Nilsson E., et al. The tandem affinity purification (TAP) method: A general procedure of protein complex purification. Methods 2001, 24(3):218-229.
    • (2001) Methods , vol.24 , Issue.3 , pp. 218-229
    • Puig, O.1    Caspary, F.2    Rigaut, G.3    Rutz, B.4    Bouveret, E.5    Bragado-Nilsson, E.6
  • 31
    • 0032828715 scopus 로고    scopus 로고
    • A generic protein purification method for protein complex characterization and proteome exploration
    • Rigaut G., Shevchenko A., Rutz B., Wilm M., Mann M., Seraphin B. A generic protein purification method for protein complex characterization and proteome exploration. Nature Biotechnology 1999, 17(10):1030-1032.
    • (1999) Nature Biotechnology , vol.17 , Issue.10 , pp. 1030-1032
    • Rigaut, G.1    Shevchenko, A.2    Rutz, B.3    Wilm, M.4    Mann, M.5    Seraphin, B.6
  • 32
    • 33745228890 scopus 로고    scopus 로고
    • Hrr25-dependent phosphorylation state regulates organization of the pre-40S subunit
    • Schäfer T., Maco B., Petfalski E., Tollervey D., Böttcher B., Aebi U., et al. Hrr25-dependent phosphorylation state regulates organization of the pre-40S subunit. Nature 2006, 441(7093):651-655.
    • (2006) Nature , vol.441 , Issue.7093 , pp. 651-655
    • Schäfer, T.1    Maco, B.2    Petfalski, E.3    Tollervey, D.4    Böttcher, B.5    Aebi, U.6
  • 33
    • 0037536219 scopus 로고    scopus 로고
    • The path from nucleolar 90S to cytoplasmic 40S pre-ribosomes
    • Schäfer T., Strauß D., Petfalski E., Tollervey D., Hurt E. The path from nucleolar 90S to cytoplasmic 40S pre-ribosomes. EMBO Journal 2003, 22(6):1370-1380.
    • (2003) EMBO Journal , vol.22 , Issue.6 , pp. 1370-1380
    • Schäfer, T.1    Strauß, D.2    Petfalski, E.3    Tollervey, D.4    Hurt, E.5
  • 34
    • 0033730418 scopus 로고    scopus 로고
    • Factors affecting nuclear export of the 60S ribosomal subunit in vivo
    • Stage-Zimmermann T., Schmidt U., Silver P.A. Factors affecting nuclear export of the 60S ribosomal subunit in vivo. Molecular Biology of the Cell 2000, 11(11):3777-3789.
    • (2000) Molecular Biology of the Cell , vol.11 , Issue.11 , pp. 3777-3789
    • Stage-Zimmermann, T.1    Schmidt, U.2    Silver, P.A.3
  • 35
    • 73249132431 scopus 로고    scopus 로고
    • Powering through ribosome assembly
    • Strunk B.S., Karbstein K. Powering through ribosome assembly. RNA 2009, 15(12):2083-2104.
    • (2009) RNA , vol.15 , Issue.12 , pp. 2083-2104
    • Strunk, B.S.1    Karbstein, K.2
  • 37
    • 0038738334 scopus 로고    scopus 로고
    • Pre-ribosomes on the road from the nucleolus to the cytoplasm
    • Tschochner H., Hurt E. Pre-ribosomes on the road from the nucleolus to the cytoplasm. Trends in Cell Biology 2003, 13(5):255-263.
    • (2003) Trends in Cell Biology , vol.13 , Issue.5 , pp. 255-263
    • Tschochner, H.1    Hurt, E.2
  • 38
    • 0015935199 scopus 로고
    • The cytoplasmic maturation of a ribosomal precursor ribonucleic acid in yeast
    • Udem S.A., Warner J.R. The cytoplasmic maturation of a ribosomal precursor ribonucleic acid in yeast. Journal of Biological Chemistry 1973, 248(4):1412-1416.
    • (1973) Journal of Biological Chemistry , vol.248 , Issue.4 , pp. 1412-1416
    • Udem, S.A.1    Warner, J.R.2
  • 39
    • 0026654989 scopus 로고
    • Separate domains of KAR1 mediate distinct functions in mitosis and nuclear fusion
    • Vallen E., Hiller M., Scherson T., Rose M. Separate domains of KAR1 mediate distinct functions in mitosis and nuclear fusion. Journal of Cell Biology 1992, 117(6):1277-1287.
    • (1992) Journal of Cell Biology , vol.117 , Issue.6 , pp. 1277-1287
    • Vallen, E.1    Hiller, M.2    Scherson, T.3    Rose, M.4
  • 42
    • 77951156201 scopus 로고    scopus 로고
    • Ecm1 is a new pre-ribosomal factor involved in pre-60S particle export
    • Yao Y., Demoinet E., Saveanu C., Lenormand P., Jacquier A., Fromont-Racine M. Ecm1 is a new pre-ribosomal factor involved in pre-60S particle export. RNA 2010, 16(5):1007-1017.
    • (2010) RNA , vol.16 , Issue.5 , pp. 1007-1017
    • Yao, Y.1    Demoinet, E.2    Saveanu, C.3    Lenormand, P.4    Jacquier, A.5    Fromont-Racine, M.6


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.