-
1
-
-
0029850333
-
Inheritance of foreign genes in transgenic bean (Phaseolus vulgaris L.) co-transformed via particle bombardment
-
doi: 10.1007/BF00225739
-
Aragao, F. J. L., Barros, L. M. G., Brasileiro, A. C. M., Ribeiro, S. G., Smith, F. D., Sanford, J. C., et al. (1996). Inheritance of foreign genes in transgenic bean (Phaseolus vulgaris L.) co-transformed via particle bombardment. Theor. Appl. Genet. 93, 142-150. doi: 10.1007/BF00225739
-
(1996)
Theor. Appl. Genet.
, vol.93
, pp. 142-150
-
-
Aragao, F.J.L.1
Barros, L.M.G.2
Brasileiro, A.C.M.3
Ribeiro, S.G.4
Smith, F.D.5
Sanford, J.C.6
-
2
-
-
84863557415
-
Genome-wide analysis of mutations in mutant lineages selected following fast-neutron irradiation mutagenesis of Arabidopsis thaliana
-
doi: 10.1101/gr.131474.111
-
Belfield, E. J., Gan, X., Mithani, A., Brown, C., Jiang, C., Franklin, K., et al. (2012). Genome-wide analysis of mutations in mutant lineages selected following fast-neutron irradiation mutagenesis of Arabidopsis thaliana. Genome Res. 22, 1306-1315. doi: 10.1101/gr.131474.111
-
(2012)
Genome Res.
, vol.22
, pp. 1306-1315
-
-
Belfield, E.J.1
Gan, X.2
Mithani, A.3
Brown, C.4
Jiang, C.5
Franklin, K.6
-
3
-
-
79956046982
-
Henotypic and genomic analyses of a fast neutron mutant population resource in soybean
-
doi: 10.1104/pp.110.170811
-
Bolon, Y.-T., Haun, W. J., Xu, W. W., Grant, D., Stacey, M. G., Nelson, R. T., et al. (2011). Henotypic and genomic analyses of a fast neutron mutant population resource in soybean. Plant Physiol. 156, 240-253. doi: 10.1104/pp.110.170811
-
(2011)
Plant Physiol.
, vol.156
, pp. 240-253
-
-
Bolon, Y.-T.1
Haun, W.J.2
Xu, W.W.3
Grant, D.4
Stacey, M.G.5
Nelson, R.T.6
-
4
-
-
0038336568
-
Beans (Phaseolus spp.)-model food legumes
-
doi: 10.1023/A:1024146710611
-
Broughton, W. J., Hernandez, G., Blair, M., Beebe, S., Gepts, P., and Vanderleyden, J. (2003). Beans (Phaseolus spp.)-model food legumes. Plant Soil 252, 55-128. doi: 10.1023/A:1024146710611
-
(2003)
Plant Soil
, vol.252
, pp. 55-128
-
-
Broughton, W.J.1
Hernandez, G.2
Blair, M.3
Beebe, S.4
Gepts, P.5
Vanderleyden, J.6
-
5
-
-
80053384429
-
Whole-genome sequencing of mulitple Arabidopsis thaliana populations
-
doi: 10.1038/ng.911
-
Cao, J, K., Schneeberger, S., Ossowski, T., Gunther, S., Bender, J., Fitz, D., et al. (2011). Whole-genome sequencing of mulitple Arabidopsis thaliana populations. Nat. Genet. 43, 956-963. doi: 10.1038/ng.911
-
(2011)
Nat. Genet.
, vol.43
, pp. 956-963
-
-
Cao, J.K.1
Schneeberger, S.2
Ossowski, T.3
Gunther, S.4
Bender, J.5
Fitz, D.6
-
6
-
-
79958292194
-
An effective virus based gene silencing method for functional genomics studies in common bean
-
doi: 10.1186/1746-4811-7-16
-
Diaz-Camino, C., Annamalai, P., Sanchez, F., Kachroo, A., and Ghabrial, S. A. (2011). An effective virus based gene silencing method for functional genomics studies in common bean. Plant Methods 7:16. doi: 10.1186/1746-4811-7-16
-
(2011)
Plant Methods
, vol.7
, pp. 16
-
-
Diaz-Camino, C.1
Annamalai, P.2
Sanchez, F.3
Kachroo, A.4
Ghabrial, S.A.5
-
7
-
-
79961184281
-
B73-Mo17 near isogenic lines demonstrate dispersed structural variation in maize
-
doi: 10.1104/pp.111.174748
-
Eichten, S. R., Foerster, J. M., de Leon, N., Kai, Y., Yeh, C.-T., Liu, S., et al. (2011). B73-Mo17 near isogenic lines demonstrate dispersed structural variation in maize. Plant Physiol. 156, 1679-1690. doi: 10.1104/pp.111.174748
-
(2011)
Plant Physiol.
, vol.156
, pp. 1679-1690
-
-
Eichten, S.R.1
Foerster, J.M.2
de Leon, N.3
Kai, Y.4
Yeh, C.-T.5
Liu, S.6
-
8
-
-
79551699087
-
The composition and origins of genomic variation among individuals of the soybean reference cultivar Williams 82
-
doi: 10.1104/pp.110.166736
-
Haun, W. J., Hyten, D. L., Xu, W. W., Gerhardt, D. J., Albert, T. J., Richmond, T., et al. (2011). The composition and origins of genomic variation among individuals of the soybean reference cultivar Williams 82. Plant Physiol. 155, 645-655. doi: 10.1104/pp.110.166736
-
(2011)
Plant Physiol.
, vol.155
, pp. 645-655
-
-
Haun, W.J.1
Hyten, D.L.2
Xu, W.W.3
Gerhardt, D.J.4
Albert, T.J.5
Richmond, T.6
-
9
-
-
84880506576
-
Resequencing rice genomes: An emerging new era of rice genomics
-
doi: 10.1016/j.tig.2012.12.001
-
Huang, X., Lu, T., and Han, B. (2012). Resequencing rice genomes: an emerging new era of rice genomics. Trends Genet. 29, 225-232. doi: 10.1016/j.tig.2012.12.001
-
(2012)
Trends Genet.
, vol.29
, pp. 225-232
-
-
Huang, X.1
Lu, T.2
Han, B.3
-
10
-
-
80052443858
-
The control of developmental phase transitions in plants
-
doi: 10.1242/dev.063511
-
Huijser, P., and Schmid, M. (2011). The control of developmental phase transitions in plants. Development 138, 4117-4129. doi: 10.1242/dev.063511
-
(2011)
Development
, vol.138
, pp. 4117-4129
-
-
Huijser, P.1
Schmid, M.2
-
11
-
-
51249114401
-
Identification of a xylogalacturonan xylosyltransferase involved in pectin biosynthesis in Arabidopsis
-
doi: 10.1105/tpc.107.050906
-
Jensen, J. K., Sorensen, S. O., Harholt, J., Geshi, N., Sakuragi, Y., Moller, I., et al. (2008). Identification of a xylogalacturonan xylosyltransferase involved in pectin biosynthesis in Arabidopsis. Plant Cell 20, 1289-1302. doi: 10.1105/tpc.107.050906
-
(2008)
Plant Cell
, vol.20
, pp. 1289-1302
-
-
Jensen, J.K.1
Sorensen, S.O.2
Harholt, J.3
Geshi, N.4
Sakuragi, Y.5
Moller, I.6
-
12
-
-
0007409309
-
Registration of 'Red Hawk' dark red kidney bean
-
doi: 10.2135/cropsci1998.0011183X003800010056x
-
Kelly, J. D., Hosfield, G. L., Varner, G. V., Uebersax, M. A., Long, R. A., and Taylor, J. (1998). Registration of 'Red Hawk' dark red kidney bean. Crop Sci. 38, 280-281. doi: 10.2135/cropsci1998.0011183X003800010056x
-
(1998)
Crop Sci.
, vol.38
, pp. 280-281
-
-
Kelly, J.D.1
Hosfield, G.L.2
Varner, G.V.3
Uebersax, M.A.4
Long, R.A.5
Taylor, J.6
-
13
-
-
53149133870
-
Snf2 proteins in plants: Gene silencing and beyond
-
doi: 10.1016/j.tplants.2008.08.004
-
Knizewski, L., Ginalski, K., and Jerzmanowski, A. (2008). Snf2 proteins in plants: gene silencing and beyond. Trends Plant Sci. 13, 557-565. doi: 10.1016/j.tplants.2008.08.004
-
(2008)
Trends Plant Sci.
, vol.13
, pp. 557-565
-
-
Knizewski, L.1
Ginalski, K.2
Jerzmanowski, A.3
-
14
-
-
84900869021
-
Genetic transformation of common bean (Phaseolus vulgaris L.) with the GUS color marker, the BAR herbicide resistance, and the barley (Hordeum vulgare) HVA1 drought tolerance genes
-
doi: 10.1155/2012/198960
-
Kwapata, K., Nguyen, T., and Sticklen, M. (2012). Genetic transformation of common bean (Phaseolus vulgaris L.) with the GUS color marker, the BAR herbicide resistance, and the barley (Hordeum vulgare) HVA1 drought tolerance genes. Int. J. Agron. 2012, 198960-198967. doi: 10.1155/2012/198960
-
(2012)
Int. J. Agron.
, vol.2012
, pp. 198960-198967
-
-
Kwapata, K.1
Nguyen, T.2
Sticklen, M.3
-
15
-
-
78049338441
-
Genome-wide patterns of genetic variation among elite maize inbred lines
-
doi: 10.1038/ng.684
-
Lai, J., Li, R., Xu, X., Jin, W., Xu, M., Zhao, H., et al. (2010). Genome-wide patterns of genetic variation among elite maize inbred lines. Nat. Genet. 42, 1027-1031. doi: 10.1038/ng.684
-
(2010)
Nat. Genet.
, vol.42
, pp. 1027-1031
-
-
Lai, J.1
Li, R.2
Xu, X.3
Jin, W.4
Xu, M.5
Zhao, H.6
-
16
-
-
67649884743
-
Fast and accurate short read alignment with Burrows-Wheeler transform
-
doi: 10.1093/bioinformatics/btp324
-
Li, H., and Durbin, R. (2009). Fast and accurate short read alignment with Burrows-Wheeler transform. Bioinformatics 25, 1754-1760. doi: 10.1093/bioinformatics/btp324
-
(2009)
Bioinformatics
, vol.25
, pp. 1754-1760
-
-
Li, H.1
Durbin, R.2
-
17
-
-
68549104404
-
The sequence alignment/map (SAM) format and SAMtools
-
doi: 10.1093/bioinformatics/btp352
-
Li, H., Handsaker, B., Wysoker, A., Fennell, T., Ruan, J., Homer, N., et al. (2009). The sequence alignment/map (SAM) format and SAMtools. Bioinformatics 25, 2078-2079. doi: 10.1093/bioinformatics/btp352
-
(2009)
Bioinformatics
, vol.25
, pp. 2078-2079
-
-
Li, H.1
Handsaker, B.2
Wysoker, A.3
Fennell, T.4
Ruan, J.5
Homer, N.6
-
18
-
-
0030934109
-
Cloning and characterization of a pollen-specific cDNA encoding a glutamic acid-rich protein (GARP) from potato Solanum berthaultii
-
doi: 10.1023/A:1005746713759
-
Liu, J., Seul, U., and Thompson, R. (1997). Cloning and characterization of a pollen-specific cDNA encoding a glutamic acid-rich protein (GARP) from potato Solanum berthaultii. Plant Mol. Biol. 33, 291-300. doi: 10.1023/A:1005746713759
-
(1997)
Plant Mol. Biol.
, vol.33
, pp. 291-300
-
-
Liu, J.1
Seul, U.2
Thompson, R.3
-
19
-
-
84872141172
-
A gain of function mutation in the ROC1 gene alters plant architecture in Arabidopsis
-
doi: 10.1111/nph.12056
-
Ma, X., Song, L., Yang, Y., and Liu, D. (2013). A gain of function mutation in the ROC1 gene alters plant architecture in Arabidopsis. New Phytol. 197, 751-762. doi: 10.1111/nph.12056
-
(2013)
New Phytol.
, vol.197
, pp. 751-762
-
-
Ma, X.1
Song, L.2
Yang, Y.3
Liu, D.4
-
20
-
-
84864692624
-
Structural variants in the soybean genome localize to clusters of biotic stress-response genes
-
doi: 10.1104/pp.112.194605
-
McHale, L. K., Haun, W. J., Xu, W. W., Bhaskar, P. B., Anderson, J. E., Hyten, D. L., et al. (2012). Structural variants in the soybean genome localize to clusters of biotic stress-response genes. Plant Physiol. 159, 1295-1308. doi: 10.1104/pp.112.194605
-
(2012)
Plant Physiol.
, vol.159
, pp. 1295-1308
-
-
McHale, L.K.1
Haun, W.J.2
Xu, W.W.3
Bhaskar, P.B.4
Anderson, J.E.5
Hyten, D.L.6
-
21
-
-
84860553218
-
RecA-Dependent DNA repair results in increased heteroplasmy of the Arabidopsis mitochondrial genome
-
doi: 10.1104/pp.112.194720
-
Miller-Messmer, M., Kuhn, K., Bichara, M., Le Ret, M., Imbault, P., and Gualberto, J. M. (2012). RecA-Dependent DNA repair results in increased heteroplasmy of the Arabidopsis mitochondrial genome. Plant Physiol. 159, 211-226. doi: 10.1104/pp.112.194720
-
(2012)
Plant Physiol.
, vol.159
, pp. 211-226
-
-
Miller-Messmer, M.1
Kuhn, K.2
Bichara, M.3
Le Ret, M.4
Imbault, P.5
Gualberto, J.M.6
-
22
-
-
77954060557
-
Genetic screens to identify plant stress genes
-
doi: 10.1007/978-1-60761-702-0_7
-
Papdi, C., Leung, J., Joseph, M. P., Salamo, I. P., and Szabados, L. (2010). Genetic screens to identify plant stress genes. Methods Mol. Biol. 639, 121-139. doi: 10.1007/978-1-60761-702-0_7
-
(2010)
Methods Mol. Biol.
, vol.639
, pp. 121-139
-
-
Papdi, C.1
Leung, J.2
Joseph, M.P.3
Salamo, I.P.4
Szabados, L.5
-
23
-
-
77951770756
-
BEDTools: A flexible suite of utilities for comparing genomic features
-
doi: 10.1093/bioinformatics/btq033
-
Quinlan, A. R., and Hall, I. M. (2010). BEDTools: a flexible suite of utilities for comparing genomic features. Bioinformatics 26, 841-842. doi: 10.1093/bioinformatics/btq033
-
(2010)
Bioinformatics
, vol.26
, pp. 841-842
-
-
Quinlan, A.R.1
Hall, I.M.2
-
24
-
-
78651271733
-
Integrative genomics viewer
-
doi: 10.1038/nbt.1754
-
Robinson, J. T., Thorvaldsdottir, H., Winckler, W., Guttman, M., Lander, E. S., Getz, G., et al. (2011). Integrative genomics viewer. Nat. Biotechnol. 29, 24-26. doi: 10.1038/nbt.1754
-
(2011)
Nat. Biotechnol.
, vol.29
, pp. 24-26
-
-
Robinson, J.T.1
Thorvaldsdottir, H.2
Winckler, W.3
Guttman, M.4
Lander, E.S.5
Getz, G.6
-
25
-
-
80053570354
-
SNF2 Family Proteins: Chromatin remodelers for any occassion
-
doi: 10.1016/j.cbpa.2011.07.022
-
Ryan, D. P., and Hughes, T. O. (2011). SNF2 Family Proteins: chromatin remodelers for any occassion. Curr. Opin. Chem. Biol. 15, 649-656. doi: 10.1016/j.cbpa.2011.07.022
-
(2011)
Curr. Opin. Chem. Biol.
, vol.15
, pp. 649-656
-
-
Ryan, D.P.1
Hughes, T.O.2
-
26
-
-
77949831756
-
Structural variation in the human genome and its role in disease
-
doi: 10.1146/annurev-med-100708-204735
-
Stankiewicz, P., and Lupski, J. R. (2010). Structural variation in the human genome and its role in disease. Ann. Rev. Med. 61, 437-455. doi: 10.1146/annurev-med-100708-204735
-
(2010)
Ann. Rev. Med.
, vol.61
, pp. 437-455
-
-
Stankiewicz, P.1
Lupski, J.R.2
-
27
-
-
33646846862
-
Nitrogen fixation mutants of Medicago truncatula fail to support plant and bacterial symbiotic gene expression
-
doi: 10.1104/pp.105.072132
-
Starker, C. G., Parra-Colmenares, A. L., Smith, L., Mitra, R. M., and Long, S. R. (2006). Nitrogen fixation mutants of Medicago truncatula fail to support plant and bacterial symbiotic gene expression. Plant Physiol. 140, 671-680. doi: 10.1104/pp.105.072132
-
(2006)
Plant Physiol.
, vol.140
, pp. 671-680
-
-
Starker, C.G.1
Parra-Colmenares, A.L.2
Smith, L.3
Mitra, R.M.4
Long, S.R.5
-
28
-
-
79961007031
-
CREST maps somatic structural variation in cancer genomes with base-pair resolution
-
doi: 10.1038/nmeth.1628
-
Wang, J., Mullighan, C. G., Easton, J., Roberts, S., Heatley, S. L., Ma, J., et al. (2011). CREST maps somatic structural variation in cancer genomes with base-pair resolution. Nat. Methods 8, 652-654. doi: 10.1038/nmeth.1628
-
(2011)
Nat. Methods
, vol.8
, pp. 652-654
-
-
Wang, J.1
Mullighan, C.G.2
Easton, J.3
Roberts, S.4
Heatley, S.L.5
Ma, J.6
-
29
-
-
78049334183
-
On reconciling the interactions between APETALA2, miR172, and AGAMOUS with the ABC model of flower development
-
doi: 10.1242/dev.036673
-
Wollmann, H., Mica, E., Todesco, M., Long, J. A., and Weigel, D. (2010). On reconciling the interactions between APETALA2, miR172, and AGAMOUS with the ABC model of flower development. Development 137, 3633-3642. doi: 10.1242/dev.036673
-
(2010)
Development
, vol.137
, pp. 3633-3642
-
-
Wollmann, H.1
Mica, E.2
Todesco, M.3
Long, J.A.4
Weigel, D.5
-
30
-
-
79958732904
-
A fast-neutron induced chromosomal fragment deletion of 3BS in wheat landrace Wangshuibai increased its susceptibility to Fusarium head blight
-
doi: 10.1007/s10577-011-9192-9
-
Xiao, J., Xinping, J., Wang, H., Zhao, R., Fang, Y., Gao, R., et al. (2011). A fast-neutron induced chromosomal fragment deletion of 3BS in wheat landrace Wangshuibai increased its susceptibility to Fusarium head blight. Chromosome Res. 19, 225-234. doi: 10.1007/s10577-011-9192-9
-
(2011)
Chromosome Res.
, vol.19
, pp. 225-234
-
-
Xiao, J.1
Xinping, J.2
Wang, H.3
Zhao, R.4
Fang, Y.5
Gao, R.6
-
31
-
-
84880169046
-
Virus induced gene silencing in soybean and common bean
-
doi: 10.1007/978-1-62703-278-0_11
-
Zhang, C., Whitham, S. A., and Hill, J. H. (2013). Virus induced gene silencing in soybean and common bean. Methods Mol. Biol. 975, 149-156. doi: 10.1007/978-1-62703-278-0_11
-
(2013)
Methods Mol. Biol.
, vol.975
, pp. 149-156
-
-
Zhang, C.1
Whitham, S.A.2
Hill, J.H.3
|