Label-free LC-MS profiling of skeletal muscle reveals heart-type fatty acid binding protein as a candidate biomarker of aerobic capacity

Proteomes

Volumn 1, Issue 3, 2013, Pages 290-308

  Malik, Zulezwan A ^a   Cobley, James N ^a   Morton, James P ^a   Close, Graeme L ^a   Edwards, Ben J ^a   Koch, Lauren G ^b   Britton, Steven L ^b   Burniston, Jatin G ^a  

^a LIVERPOOL JOHN MOORES UNIVERSITY   (United Kingdom)

^b UNIVERSITY OF MICHIGAN MEDICAL SCHOOL   (United States)

Author keywords

Aerobic capacity; Animal selection model; Exercise training; Fabp3; FABPH; Heart type fatty acid binding protein; Human vastus lateralis; Selective reaction monitoring

Indexed keywords

EID: 84900827580     PISSN: None     EISSN: 22277382     Source Type: Journal    
DOI: 10.3390/proteomes1030290     Document Type: Article

References (34)

1. Holloway, K.V.; OGorman, M.; Woods, P.; Morton, J.P.; Evans, L.; Cable, N.T.; Goldspink, D.F.; Burniston, J.G. Proteomic investigation of changes in human vastus lateralis muscle in response to interval-exercise training. Proteomics 2009, 9, 5155-5174
2. Staunton, L.; Zweyer, M.; Swandulla, D.; Ohlendieck, K. Mass spectrometry-based proteomic analysis of middle-aged vs. aged vastus lateralis reveals increased levels of carbonic anhydrase isoform 3 in senescent human skeletal muscle. Int. J. Mol. Med. 2012, 30, 723-733
3. Moriggi, M.; Vasso, M.; Fania, C.; Capitanio, D.; Bonifacio, G.; Salanova, M.; Blottner, D.; Ritweger, J.; Felsenberg, D.; Cerretelli, P.; et al. Long term bed rest with and without vibration exercise countermeasures: Effects on human muscle protein dysregulation. Proteomics 2010, 10, 3756-3774
4. Hittel, D.S.; Hathout, Y.; Hoffman, E.P.; Houmard, J.A. Proteome analysis of skeletal muscle from obese and morbidly obese women. Diabetes 2005, 54, 1283-1288
5. Isfort, R.J.; Hinkle, R.T.; Jones, M.B.; Wang, F.; Greis, K.D.; Sun, Y.; Keough, T.W.; Anderson, N.L.; Sheldon, R.J. Proteomic analysis of the atrophying rat soleus muscle following denervation. Electrophoresis 2000, 21, 2228-2234
6. Donoghue, P.; Doran, P.; Wynne, K.; Pedersen, K.; Dunn, M.J.; Ohlendieck, K. Proteomic profiling of chronic low-frequency stimulated fast muscle. Proteomics 2007, 7, 3417-3430
7. Jungblut, P.; Holzhütter, H.; Apweiler, R.; Schlüter, H. The speciation of the proteome. Chem. Cent. J. 2008, 2, 1-10
8. Parker, K.C.; Walsh, R.; Salajegheh, M.; Amato, A.; Krastins, B.; Sarracino, D.A.; Greenberg, S.A. Characterization of human skeletal muscle biopsy samples using shotgun proteomics. J. Proteome Res. 2009, 8, 3265-3277
9. Hojlund, K.; Yi, Z.; Hwang, H.; Bowen, B.; Lefort, N.; Flynn, C.R.; Langlais, P.; Weintraub, S.T.; Mandarino, L.J. Characterization of the human skeletal muscle proteome by one-dimensional Gel electrophoresis and HPLC-ESI-MS/MS. Mol. Cell. Proteomics 2007, 7, 257-267
10. Hussey, S.E.; Sharoff, C.G.; Garnham, A.; Zhengping, Y.; Bowen, B.P.; Mandarino, L.J.; Hargreaves, M. Effect of exercise on the skeletal muscle proteome in patients with type 2 diabetes. Med. Sci. Sports Exerc. 2012, 45, 1069-1076
11. Pette, D. Metabolic heterogeneity of muscle fibres. J. Exp. Biol. 1985, 115, 179-189
12. Gelfi, C.; Vigano, A.; Ripamonti, M.; Pontoglio, A.; Begum, S.; Pellegrino, M.A.; Grassi, B.; Bottinelli, R.; Wait, R.; Cerretelli, P. The human muscle proteome in aging. J. Proteome Res. 2006, 5, 1344-1353
13. Holloszy, J.O. Biochemical adaptations in muscle. Effects of exercise on mitochondrial oxygen uptake and respiratory enzyme activity in skeletal muscle. J. Biol. Chem. 1967, 242, 2278-2282
14. Kornberg, M.D.; Sen, N.; Hara, M.R.; Juluri, K.R.; Nguyen, J.V.K.; Snowman, A.M.; Law, L.; Hester, J.D.; Snyder, S.H. GAPDH mediates nitrosylation of nuclear proteins. Nat. Cell. Biol. 2010, 12, 1094-1100
15. Koch, L.G.; Britton, S.L. Artificial selection for intrinsic aerobic endurance running capacity in rats. Physiol. Genomics 2001, 5, 45-52
16. Burniston, J.G.; Kenyani, J.; Wastling, J.M.; Burant, C.F.; Qi, N.R.; Koch, L.G.; Britton, S.L. Proteomic analysis reveals perturbed energy metabolism and elevated oxidative stress in hearts of rats with inborn low aerobic capacity. Proteomics 2011, 11, 3369-3379
17. Kivelä, R.; Silvennoinen, M.; Lehti, M.; Rinnankoski-Tuikka, R.; Purhonen, T.; Ketola, T.; Pullinen, K.; Vuento, M.; Mutanen, N.; Sartor, M.A.; et al. Gene expression centroids that link with low intrinsic aerobic exercise capacity and complex disease risk. FASEB J. 2010, 24, 4565-4574
18. Huang, D.A.W.; Sherman, B.T.; Lempicki, R.A. Systematic and integrative analysis of large gene lists using DAVID bioinformatics resources. Nat. Protoc. 2009, 4, 44-57
19. Kanehisa, M.; Goto, S. KEGG: Kyoto encyclopedia of genes and genomes. Nucleic Acids Res. 2000, 28, 27-30
20. Zhen, E.Y.; Berna, M.J.; Jin, Z.; Pritt, M.L.; Watson, D.E.; Ackermann, B.L.; Hale, J.E. Quantification of heart fatty acid binding protein as a biomarker for drug-induced cardiac and musculoskeletal necroses. Proteomics Clin. Appl. 2007, 1, 661-671
21. Cobley, N.; Bartlett, J.D.; Kayani, A.; Murray, S.W.; Louhelainen, J.; Donovan, T.; Waldron, S.; Gregson, W.; Burniston, J.G.; Morton, J.P.; et al. PGC-1a transcriptional response and mitochondrial adaptation to acute exercise is maintained in skeletal muscle of sedentary elderly males. Biogerontology 2012, 13, 621-631
22. Koch, L.G.; Kemi, O.J.; Qi, N.; Leng, S.X.; Bijma, P.; Gilligan, L.J.; Wilkinson, J.E.; Wisloff, H.; Hoydal, M.A.; Rolim, N.; et al. Intrinsic aerobic capacity sets a divide for aging and longevity. Circ. Res. 2011, 109, 1162-1172
23. Rivas, D.A.; Lessard, S.J.; Saito, M.; Friedhuber, A.M.; Koch, L.G.; Britton, S.L.; Yasoelkis, B.B.; Hawley, J.A. Low intrinsic running capacity is associated with reduced skeletal muscle substrate oxidation and lower mitochondrial content in white skeletal muscle. Am. J. Physiol. Regul. Integr. Comp. Physiol. 2011, 300, R835-R843
24. Seifert, E.L.; Bastianelli, M.; Aguer, C.; Moffat, C.; Estey, C.; Koch, L.G.; Britton, S.L.; Harper, M.-E. Intrinsic aerobic capacity correlates with inherent mitochondrial oxidative and H2O2 emission capacities without major shifts in myosin heavy chain isoform. J. Appl. Physiol. 2012, 113, 1624-1634
25. Noland, R.C.; Thyfault, J.P.; Henes, S.T.; Whitfield, B.R.; Woodlief, T.L.; Evan, J.R.; Lust, J.A.; Britton, S.L.; Koch, L.G.; Dudek, R.W.; et al. Artificial selection for high-capacity endurance running is protective against high-fat diet-induced insulin resistance. Am. J. Physiol. Endocrinol. Metab. 2007, 293, E31-E41
26. Wisloff, U.; Najjar, S.M.; Ellingsen, O.; Haram, P.M.; Swoap, S.; Al-Sahre, Q.; Frenstrom, M.; Razaei, K.; Lee, S.J.; Koch, L.G.; et al. Cardiovascular risk factors emerge after artificial selection for low aerobic capacity. Science 2005, 307, 418-420
27. Burniston, J.G.; Hoffman, E.P. Proteomic responses of skeletal and cardiac muscle to exercise. Expert Rev. Proteomics 2011, 8, 361-377
28. Bell, R.; Hubbard, A.; Chettier, R.; Chen, D.; Miller, J.P.; Kapahi, P.; Tarnopolsky, M.; Sahasrabuhde, S.; Melov, S.; Hughes, R.E. A human protein interaction network shows conservation of aging processes between human and invertebrate species. PLoS Genet. 2009, 5, e1000414
29. Han, B.; Higgs, R.E. Proteomics: From hypothesis to quantitative assay on a single platform. Guidelines for developing MRM assays using ion trap mass spectrometers. Brief. Funct. Genomic Proteomic. 2008, 7, 340-354
30. Binas, B.; Erol, E. FABPs as determinants of myocellular and hepatic fuel metabolism. Mol. Cell. Biochem. 2007, 299, 75-84
31. Shearer, J.; Fueger, P.T.; Rottman, J.N.; Bracy, D.P.; Binas, B.; Wasserman, D.H. Heart-type fatty acid-binding protein reciprocally regulates glucose and fatty acid utilization during exercise. Am. J. Physiol. Endocrinol. Metab. 2005, 288, E292-E297
32. Shaw, C.S.; Clark, J.; Wagenmakers, A.J. The effect of exercise and nutrition on intramuscular fat metabolism and insulin sensitivity. Annu. Rev. Nutr. 2010, 30, 13-34
33. Doran, P.; Donoghue, P.; ǑConnell, K.; Gannon, J.; Ohlendieck, K. Proteomics of skeletal muscle aging. Proteomics 2009, 9, 989-1003
34. Gannon, J.; Doran, P.; Kirwan, A.; Ohlendieck, K. Drastic increase of myosin light chain MLC-2 in senescent skeletal muscle indicates fast-to-slow fibre transition in sarcopenia of old age. Eur. J. Cell. Biol. 2009, 88, 685-700