NGSANE: A lightweight production informatics framework for high-throughput data analysis

Bioinformatics

Volumn 30, Issue 10, 2014, Pages 1471-1472

  Buske, Fabian A ^a   French, Hugh J ^a   Smith, Martin A ^b   Clark, Susan J ^a,b   Bauer, Denis C ^c  

^a GARVAN INSTITUTE OF MEDICAL RESEARCH   (Australia)

^b UNIVERSITY OF NEW SOUTH WALES   (Australia)

^c CSIRO   (Australia)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; COMPUTER PROGRAM; HIGH THROUGHPUT SEQUENCING; HUMAN; LABORATORY AUTOMATION; METHODOLOGY;

AUTOMATION, LABORATORY; HIGH-THROUGHPUT NUCLEOTIDE SEQUENCING; HUMANS; SOFTWARE;

EID: 84900814236     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu036     Document Type: Article

References (6)

1. Anders, S. et al. (2013) Count-based differential expression analysis of RNA sequencing data using R and Bioconductor. Nat. Protoc., 8, 1765-1786
2. Auer, P.L. and Doerge, R.W. (2010) Statistical design and analysis of RNA sequencing data. Genetics, 185, 405-416
3. Goecks, J. et al. (2010) Galaxy: A comprehensive approach for supporting accessible, reproducible and transparent computational research in the life sciences. Genome Biol., 11, R86
4. KösterJ. and Rahmann, S. 2012 Snakemake-A scalable bioinformatics workflow engine Bioinformatics1 28 2520-2522
5. McCoy, C.O. et al. (2013) Nestly-A framework for running software with nested parameter choices and aggregating results. Bioinformatics, 29, 387-388
6. Sadedin, S.P. et al. (2012) Bpipe: A tool for running and managing bioinformatics pipelines. Bioinformatics, 28, 1525-1526.