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Volumn 30, Issue 10, 2014, Pages 1469-1470

PGP: Parallel prokaryotic proteogenomics pipeline for MPI clusters, high-throughput batch clusters and multicore workstations

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; CHEMISTRY; CLUSTER ANALYSIS; COMPUTER PROGRAM; GENOMICS; HIGH THROUGHPUT SEQUENCING; MASS SPECTROMETRY; METHODOLOGY; PROKARYOTIC CELL; PROTEOMICS;

EID: 84900804573     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btu051     Document Type: Article
Times cited : (17)

References (10)
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    • Plant Proteogenomics: From protein extraction to improved gene predictions
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  • 3
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    • Galaxy: A platform for interactive large-scale genome analysis
    • Giardine, B. et al. (2005) Galaxy: A platform for interactive large-scale genome analysis. Genome Res., 15, 1451-1455
    • (2005) Genome Res , vol.15 , pp. 1451-1455
    • Giardine, B.1
  • 4
    • 84886054819 scopus 로고    scopus 로고
    • Proteogenomic analysis of Bradyrhizobium japonicum USDA110 using GenoSuite, an automated multi-Algorithmic pipeline
    • Kumar, D. et al. (2013) Proteogenomic analysis of Bradyrhizobium japonicum USDA110 using GenoSuite, an automated multi-Algorithmic pipeline. Mol. Cell. Proteomics, 12, 3388-3397
    • (2013) Mol. Cell. Proteomics , vol.12 , pp. 3388-3397
    • Kumar, D.1
  • 5
    • 38549101119 scopus 로고    scopus 로고
    • The integrated microbial genomes (IMG) system in 2007: Data content and analysis tool extensions
    • Markowitz, V.M. et al. (2008) The integrated microbial genomes (IMG) system in 2007: Data content and analysis tool extensions. Nucleic Acids Res., 36, D528-D533
    • (2008) Nucleic Acids Res , vol.36
    • Markowitz, V.M.1
  • 6
    • 84879330970 scopus 로고    scopus 로고
    • Peppy: Proteogenomic search software
    • Risk, B.A. et al. (2013) Peppy: Proteogenomic search software. J. Proteome Res., 12, 3019-3025
    • (2013) J. Proteome Res , vol.12 , pp. 3019-3025
    • Risk, B.A.1
  • 7
    • 79955002352 scopus 로고    scopus 로고
    • The proteogenomic mapping tool
    • Sanders, W.S. et al. (2011) The proteogenomic mapping tool. BMC Bioinformatics, 12, 115
    • (2011) BMC Bioinformatics , vol.12 , pp. 115
    • Sanders, W.S.1
  • 9
    • 84860575662 scopus 로고    scopus 로고
    • Proteogenomic analysis of Bacteria and Archaea: A 46 organism case study
    • Venter, E. et al. (2011) Proteogenomic analysis of Bacteria and Archaea: A 46 organism case study. PLoS One, 6, e27587
    • (2011) PLoS One , vol.6
    • Venter, E.1
  • 10
    • 84882310107 scopus 로고    scopus 로고
    • The Taverna workflow suite: Designing and executing workflows of web services on the desktop, web or in the cloud
    • Wolstencroft, K. et al. (2013) The Taverna workflow suite: Designing and executing workflows of web services on the desktop, web or in the cloud. Nucleic Acids Res., 41, W557-W561.
    • (2013) Nucleic Acids Res , vol.41
    • Wolstencroft, K.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.