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Volumn 111, Issue 19, 2014, Pages 7156-7160

Controllability in protein interaction networks

Author keywords

[No Author keywords available]

Indexed keywords

HUB PROTEIN; MINIMUM DOMINATING SETS OF PROTEIN; PROTEIN DERIVATIVE; PROTEIN KINASE; TRANSCRIPTION FACTOR; UNCLASSIFIED DRUG;

EID: 84900503465     PISSN: 00278424     EISSN: 10916490     Source Type: Journal    
DOI: 10.1073/pnas.1311231111     Document Type: Article
Times cited : (201)

References (32)
  • 1
    • 79955879494 scopus 로고    scopus 로고
    • Controllability of complex networks
    • Liu YY, Slotine JJ, Barabási AL (2011) Controllability of complex networks. Nature 473(7346):167-173.
    • (2011) Nature , vol.473 , Issue.7346 , pp. 167-173
    • Liu, Y.Y.1    Slotine, J.J.2    Barabási, A.L.3
  • 2
    • 84864367967 scopus 로고    scopus 로고
    • Dominating scale-free networks with variable scaling exponent: Heterogeneous networks are not difficult to control
    • Nacher J, Akutsu T (2012) Dominating scale-free networks with variable scaling exponent: Heterogeneous networks are not difficult to control. New J Phys 14(7): 073005-073028.
    • (2012) New J Phys , vol.14 , Issue.7 , pp. 073005-073028
    • Nacher, J.1    Akutsu, T.2
  • 3
    • 0035799707 scopus 로고    scopus 로고
    • Lethality and centrality in protein networks
    • Jeong H, Mason SP, Barabási AL, Oltvai ZN (2001) Lethality and centrality in protein networks. Nature 411(6833):41-42.
    • (2001) Nature , vol.411 , Issue.6833 , pp. 41-42
    • Jeong, H.1    Mason, S.P.2    Barabási, A.L.3    Oltvai, Z.N.4
  • 4
    • 53349117774 scopus 로고    scopus 로고
    • High-quality binary protein interaction map of the yeast inter-actome network
    • Yu H, et al. (2008) High-quality binary protein interaction map of the yeast inter-actome network. Science 322(5898):104-110.
    • (2008) Science , vol.322 , Issue.5898 , pp. 104-110
    • Yu, H.1
  • 5
    • 13844310836 scopus 로고    scopus 로고
    • Peeling the yeast protein network
    • Wuchty S, Almaas E (2005) Peeling the yeast protein network. Proteomics 5(2): 444-449.
    • (2005) Proteomics , vol.5 , Issue.2 , pp. 444-449
    • Wuchty, S.1    Almaas, E.2
  • 6
    • 50949092459 scopus 로고    scopus 로고
    • Why do hubs in the yeast protein interaction network tend to be essential: Reexamining the connection between the network topology and essentiality
    • Zotenko E, Mestre J, O'Leary DP, Przytycka TM (2008) Why do hubs in the yeast protein interaction network tend to be essential: Reexamining the connection between the network topology and essentiality. PLOS Comput Biol 4(8):e1000140.
    • (2008) PLOS Comput Biol , vol.4 , Issue.8
    • Zotenko, E.1    Mestre, J.2    O'Leary, D.P.3    Przytycka, T.M.4
  • 7
    • 84874772501 scopus 로고    scopus 로고
    • From hub proteins to hub modules: The relationship between essentiality and centrality in the yeast interactome at different scales of organization
    • Song J, Singh M (2013) From hub proteins to hub modules: The relationship between essentiality and centrality in the yeast interactome at different scales of organization. PLOS Comput Biol 9(2):e1002910.
    • (2013) PLOS Comput Biol , vol.9 , Issue.2
    • Song, J.1    Singh, M.2
  • 8
    • 33746631391 scopus 로고    scopus 로고
    • Evolutionary and physiological importance of hub proteins
    • Batada NN, Hurst LD, Tyers M (2006) Evolutionary and physiological importance of hub proteins. PLOS Comput Biol 2(7):e88.
    • (2006) PLOS Comput Biol , vol.2 , Issue.7
    • Batada, N.N.1    Hurst, L.D.2    Tyers, M.3
  • 10
    • 74549134502 scopus 로고    scopus 로고
    • Human cancer protein-protein interaction network: A structural perspective
    • Kar G, Gursoy A, Keskin O (2009) Human cancer protein-protein interaction network: A structural perspective. PLOS Comput Biol 5(12):e1000601.
    • (2009) PLOS Comput Biol , vol.5 , Issue.12
    • Kar, G.1    Gursoy, A.2    Keskin, O.3
  • 11
    • 33748706765 scopus 로고    scopus 로고
    • Global topological features of cancer proteins in the human interactome
    • Jonsson PF, Bates PA (2006) Global topological features of cancer proteins in the human interactome. Bioinformatics 22(18):2291-2297.
    • (2006) Bioinformatics , vol.22 , Issue.18 , pp. 2291-2297
    • Jonsson, P.F.1    Bates, P.A.2
  • 12
    • 84864376672 scopus 로고    scopus 로고
    • HINT: High-quality protein interactomes and their applications in understanding human disease
    • Das J, Yu H (2012) HINT: High-quality protein interactomes and their applications in understanding human disease. BMC Syst Biol 6:92.
    • (2012) BMC Syst Biol , vol.6 , pp. 92
    • Das, J.1    Yu, H.2
  • 13
    • 14744270216 scopus 로고    scopus 로고
    • A first-draft human protein-interaction map
    • Lehner B, Fraser AG (2004) A first-draft human protein-interaction map. Genome Biol 5(9):R63.
    • (2004) Genome Biol , vol.5 , Issue.9
    • Lehner, B.1    Fraser, A.G.2
  • 14
    • 33846115005 scopus 로고    scopus 로고
    • CancerGenes: A gene selection resource for cancer genome projects
    • Higgins ME, Claremont M, Major JE, Sander C, Lash AE (2007) CancerGenes: A gene selection resource for cancer genome projects. Nucleic Acids Res 35(Database issue): D721-D726.
    • (2007) Nucleic Acids Res , vol.35 , Issue.DATABASE ISSUE
    • Higgins, M.E.1    Claremont, M.2    Major, J.E.3    Sander, C.4    Lash, A.E.5
  • 15
    • 0037138406 scopus 로고    scopus 로고
    • MINT: A Molecular INTeraction database
    • Zanzoni A, et al. (2002) MINT: A Molecular INTeraction database. FEBS Lett 513(1): 135-140.
    • (2002) FEBS Lett , vol.513 , Issue.1 , pp. 135-140
    • Zanzoni, A.1
  • 16
    • 0346494858 scopus 로고    scopus 로고
    • DEG: A database of essential genes
    • Zhang R, Ou HY, Zhang CT (2004) DEG: A database of essential genes. Nucleic Acids Res 32(Database issue):D271-D272.
    • (2004) Nucleic Acids Res , vol.32 , Issue.DATABASE ISSUE
    • Zhang, R.1    Ou, H.Y.2    Zhang, C.T.3
  • 17
    • 75549091794 scopus 로고    scopus 로고
    • CORUM: The comprehensive resource of mammalian protein complexes-2009
    • Ruepp A, et al. (2010) CORUM: The comprehensive resource of mammalian protein complexes-2009. Nucleic Acids Res 38(Database issue):D497-D501.
    • (2010) Nucleic Acids Res , vol.38 , Issue.DATABASE ISSUE
    • Ruepp, A.1
  • 18
  • 19
    • 80054048810 scopus 로고    scopus 로고
    • Shared molecular strategies of the malaria parasite P. Falciparum and the human virus HIV-1
    • 009035
    • Wuchty S, Siwo GH, Ferdig MT (2011) Shared molecular strategies of the malaria parasite P. falciparum and the human virus HIV-1. Mol Cell Proteomics 10(10):M111 009035.
    • (2011) Mol Cell Proteomics , vol.10 , Issue.10
    • Wuchty, S.1    Siwo, G.H.2    Ferdig, M.T.3
  • 20
    • 34247622363 scopus 로고    scopus 로고
    • The importance of bottlenecks in protein networks: Correlation with gene essentiality and expression dynamics
    • Yu H, Kim PM, Sprecher E, Trifonov V, Gerstein M (2007) The importance of bottlenecks in protein networks: Correlation with gene essentiality and expression dynamics. PLOS Comput Biol 3(4):e59.
    • (2007) PLOS Comput Biol , vol.3 , Issue.4
    • Yu, H.1    Kim, P.M.2    Sprecher, E.3    Trifonov, V.4    Gerstein, M.5
  • 21
    • 75649111192 scopus 로고    scopus 로고
    • The genetic landscape of a cell
    • Costanzo M, et al. (2010) The genetic landscape of a cell. Science 327(5964):425-431.
    • (2010) Science , vol.327 , Issue.5964 , pp. 425-431
    • Costanzo, M.1
  • 22
    • 33644873184 scopus 로고    scopus 로고
    • BioGRID: A general repository for interaction datasets
    • Stark C, et al. (2006) BioGRID: A general repository for interaction datasets. Nucleic Acids Res 34(Database issue):D535-D539.
    • (2006) Nucleic Acids Res , vol.34 , Issue.DATABASE ISSUE
    • Stark, C.1
  • 23
    • 27344435774 scopus 로고    scopus 로고
    • Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles
    • Subramanian A, et al. (2005) Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles. Proc Natl Acad Sci USA 102(43):15545-15550.
    • (2005) Proc Natl Acad Sci USA , vol.102 , Issue.43 , pp. 15545-15550
    • Subramanian, A.1
  • 24
    • 33644876958 scopus 로고    scopus 로고
    • TRANSFAC and its module TRANSCompel: Transcriptional gene regulation in eukaryotes
    • Matys V, et al. (2006) TRANSFAC and its module TRANSCompel: Transcriptional gene regulation in eukaryotes. Nucleic Acids Res 34(Database issue):D108-D110.
    • (2006) Nucleic Acids Res , vol.34 , Issue.DATABASE ISSUE
    • Matys, V.1
  • 25
    • 34250743173 scopus 로고    scopus 로고
    • Systematic discovery of in vivo phosphorylation networks
    • Linding R, et al. (2007) Systematic discovery of in vivo phosphorylation networks. Cell 129(7):1415-1426.
    • (2007) Cell , vol.129 , Issue.7 , pp. 1415-1426
    • Linding, R.1
  • 26
    • 38549109487 scopus 로고    scopus 로고
    • NetworKIN: A resource for exploring cellular phosphorylation networks
    • Linding R, et al. (2008) NetworKIN: A resource for exploring cellular phosphorylation networks. Nucleic Acids Res 36(Database issue):D695-D699.
    • (2008) Nucleic Acids Res , vol.36 , Issue.DATABASE ISSUE
    • Linding, R.1
  • 27
    • 78651272522 scopus 로고    scopus 로고
    • YEASTRACT: Providing a programmatic access to cu-rated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface
    • Abdulrehman D, et al. (2011) YEASTRACT: Providing a programmatic access to cu-rated transcriptional regulatory associations in Saccharomyces cerevisiae through a web services interface. Nucleic Acids Res 39(Database issue):D136-D140.
    • (2011) Nucleic Acids Res , vol.39 , Issue.DATABASE ISSUE
    • Abdulrehman, D.1
  • 28
    • 28444460297 scopus 로고    scopus 로고
    • Global analysis of protein phosphorylation in yeast
    • Ptacek J, et al. (2005) Global analysis of protein phosphorylation in yeast. Nature 438(7068):679-684.
    • (2005) Nature , vol.438 , Issue.7068 , pp. 679-684
    • Ptacek, J.1
  • 29
    • 77955505357 scopus 로고    scopus 로고
    • Protein-protein interactions essentials: Key concepts to building and analyzing interactome networks
    • De Las Rivas J, Fontanillo C (2010) Protein-protein interactions essentials: Key concepts to building and analyzing interactome networks. PLOS Comput Biol 6(6): e1000807.
    • (2010) PLOS Comput Biol , vol.6 , Issue.6
    • De Las Rivas, J.1    Fontanillo, C.2
  • 31
    • 0001173632 scopus 로고
    • An automatic method of solving discrete programming-problems
    • Land AH, Doig AG (1960) An automatic method of solving discrete programming-problems. Econometrica 28(3):497-520.
    • (1960) Econometrica , vol.28 , Issue.3 , pp. 497-520
    • Land, A.H.1    Doig, A.G.2
  • 32
    • 77957869184 scopus 로고    scopus 로고
    • Viral organization of human proteins
    • Wuchty S, Siwo G, Ferdig MT (2010) Viral organization of human proteins. PLoS ONE 5(8):e11796.
    • (2010) PLoS ONE , vol.5 , Issue.8
    • Wuchty, S.1    Siwo, G.2    Ferdig, M.T.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.