-
1
-
-
84874772938
-
Proteins involved in electron transfer to Fe(III) and Mn(IV) oxides by Geobacter sulfurreducens and Geobacter uraniireducens
-
Aklujkar M., Coppi M.V., Leang C., Kim B.-C., Chavan M.A., Perpetua L.A., Giloteaux L., Liu A., Holmes D. Proteins involved in electron transfer to Fe(III) and Mn(IV) oxides by Geobacter sulfurreducens and Geobacter uraniireducens. Microbiology 2013, 159:515-535. 10.1099/mic.0.064089-0.
-
(2013)
Microbiology
, vol.159
, pp. 515-535
-
-
Aklujkar, M.1
Coppi, M.V.2
Leang, C.3
Kim, B.-C.4
Chavan, M.A.5
Perpetua, L.A.6
Giloteaux, L.7
Liu, A.8
Holmes, D.9
-
2
-
-
77649141318
-
Unique flexibility in energy metabolism allows mycobacteria to combat starvation and hypoxia
-
Berney M., Cook G.M. Unique flexibility in energy metabolism allows mycobacteria to combat starvation and hypoxia. PLoS One 2010, 5:e8614. 10.1371/journal.pone.0008614.
-
(2010)
PLoS One
, vol.5
-
-
Berney, M.1
Cook, G.M.2
-
3
-
-
65349174431
-
Bacterial consortium proteomics under 4-chlorosalicylate carbon-limiting conditions
-
Bobadilla Fazzini R.A., Bielecka A., Quintas A.K.P., Golyshin P.N., Preto M.J., Timmis K.N., dos Santos V.A.P.M. Bacterial consortium proteomics under 4-chlorosalicylate carbon-limiting conditions. Proteomics 2009, 9:2273-2285.
-
(2009)
Proteomics
, vol.9
, pp. 2273-2285
-
-
Bobadilla Fazzini, R.A.1
Bielecka, A.2
Quintas, A.K.P.3
Golyshin, P.N.4
Preto, M.J.5
Timmis, K.N.6
dos Santos, V.A.P.M.7
-
4
-
-
67349163245
-
Benzene degradation by Ralstonia pickettii PKO1 in the presence of the alternative substrate succinate
-
Bucheli-Witschel M., Hafner T., Ruegg I., Egli T. Benzene degradation by Ralstonia pickettii PKO1 in the presence of the alternative substrate succinate. Biodegradation 2009, 20:419-431.
-
(2009)
Biodegradation
, vol.20
, pp. 419-431
-
-
Bucheli-Witschel, M.1
Hafner, T.2
Ruegg, I.3
Egli, T.4
-
5
-
-
0028226744
-
Inducibility of the TOL catabolic pathway in Pseudomonas putida (pWW0) growing on succinate in continuous culture: evidence of carbon catabolite repression control
-
Duetz W.A., Marques S., de Jong C., Ramos J.L., van Andel J.G. Inducibility of the TOL catabolic pathway in Pseudomonas putida (pWW0) growing on succinate in continuous culture: evidence of carbon catabolite repression control. J. Bacteriol. 1994, 176:2354-2361.
-
(1994)
J. Bacteriol.
, vol.176
, pp. 2354-2361
-
-
Duetz, W.A.1
Marques, S.2
de Jong, C.3
Ramos, J.L.4
van Andel, J.G.5
-
6
-
-
84870987046
-
Evaluation of a genome-scale in silico metabolic model for Geobacter metallireducens by using proteomic data from a field biostimulation experiment
-
Fang Y., Wilkins M.J., Yabusaki S.B., Lipton M.S., Long P.E. Evaluation of a genome-scale in silico metabolic model for Geobacter metallireducens by using proteomic data from a field biostimulation experiment. Appl. Environ. Microbiol. 2012, 78:8735-8742.
-
(2012)
Appl. Environ. Microbiol.
, vol.78
, pp. 8735-8742
-
-
Fang, Y.1
Wilkins, M.J.2
Yabusaki, S.B.3
Lipton, M.S.4
Long, P.E.5
-
8
-
-
23944523895
-
A census of membrane-bound and intracellular signal transduction proteins in bacteria: bacterial IQ, extroverts and introverts
-
Galperin M.Y. A census of membrane-bound and intracellular signal transduction proteins in bacteria: bacterial IQ, extroverts and introverts. BMC Microbiol. 2005, 5:1-19.
-
(2005)
BMC Microbiol.
, vol.5
, pp. 1-19
-
-
Galperin, M.Y.1
-
9
-
-
77957277248
-
Understanding the physiology of Lactobacillus plantarum at zero growth
-
Goffin P., van de Bunt B., Giovane M., Leveau J.H.J., Hoppener-Ogawa S., Teusink B., Hugenholtz J. Understanding the physiology of Lactobacillus plantarum at zero growth. Mol. Syst. Biol. 2010, 6:413.
-
(2010)
Mol. Syst. Biol.
, vol.6
, pp. 413
-
-
Goffin, P.1
van de Bunt, B.2
Giovane, M.3
Leveau, J.H.J.4
Hoppener-Ogawa, S.5
Teusink, B.6
Hugenholtz, J.7
-
10
-
-
45049088226
-
Characterization of microbial processes in deep aquifers of the Fennoscandian Shield
-
Hallbeck L., Pedersen K. Characterization of microbial processes in deep aquifers of the Fennoscandian Shield. Appl. Geochem. 2008, 23:1796-1819.
-
(2008)
Appl. Geochem.
, vol.23
, pp. 1796-1819
-
-
Hallbeck, L.1
Pedersen, K.2
-
11
-
-
0020696807
-
Physiological responses to nutrient limitation
-
Harder W., Dijkhuizen L. Physiological responses to nutrient limitation. Annu. Rev. Microbiol. 1983, 37:1-23.
-
(1983)
Annu. Rev. Microbiol.
, vol.37
, pp. 1-23
-
-
Harder, W.1
Dijkhuizen, L.2
-
12
-
-
0036198628
-
Recent insights into the general stress response regulatory network in Escherichia coli
-
Hengge-Aronis R. Recent insights into the general stress response regulatory network in Escherichia coli. J. Mol. Microbiol. Biotechnol. 2002, 4:341-346.
-
(2002)
J. Mol. Microbiol. Biotechnol.
, vol.4
, pp. 341-346
-
-
Hengge-Aronis, R.1
-
13
-
-
84872436756
-
Microbial life under extreme energy limitation
-
Hoehler T.M., Jorgensen B.B. Microbial life under extreme energy limitation. Nat. Rev. Microbiol. 2013, 11:83-94.
-
(2013)
Nat. Rev. Microbiol.
, vol.11
, pp. 83-94
-
-
Hoehler, T.M.1
Jorgensen, B.B.2
-
14
-
-
84874738811
-
Molecular analysis of the in situ growth rates of subsurface Geobacter species
-
Holmes D.E., Giloteaux L., Barlett M., Chavan M.A., Smith J.A., Williams K.H., Wilkins M., Long P., Lovley D.R. Molecular analysis of the in situ growth rates of subsurface Geobacter species. Appl. Environ. Microbiol. 2013, 79:1646-1653.
-
(2013)
Appl. Environ. Microbiol.
, vol.79
, pp. 1646-1653
-
-
Holmes, D.E.1
Giloteaux, L.2
Barlett, M.3
Chavan, M.A.4
Smith, J.A.5
Williams, K.H.6
Wilkins, M.7
Long, P.8
Lovley, D.R.9
-
15
-
-
58549102477
-
Transcriptome of Geobacter uraniireducens growing in uranium-contaminated subsurface sediments
-
Holmes D.E., O'Neil R.A., Chavan M.A., N'Guessan L.A., Vrionis H.A., Perpetua L.A., Larrahondo M.J., DiDonato R., Liu A., Lovley D.R. Transcriptome of Geobacter uraniireducens growing in uranium-contaminated subsurface sediments. ISME J. 2009, 3:216-230.
-
(2009)
ISME J.
, vol.3
, pp. 216-230
-
-
Holmes, D.E.1
O'Neil, R.A.2
Chavan, M.A.3
N'Guessan, L.A.4
Vrionis, H.A.5
Perpetua, L.A.6
Larrahondo, M.J.7
DiDonato, R.8
Liu, A.9
Lovley, D.R.10
-
16
-
-
25144518340
-
Global physiological analysis of carbon- and energy-limited growing Escherichia coli confirms a high degree of catabolic flexibility and preparedness for mixed substrate utilization
-
Ihssen J., Egli T. Global physiological analysis of carbon- and energy-limited growing Escherichia coli confirms a high degree of catabolic flexibility and preparedness for mixed substrate utilization. Environ. Microbiol. 2005, 7:1568-1581.
-
(2005)
Environ. Microbiol.
, vol.7
, pp. 1568-1581
-
-
Ihssen, J.1
Egli, T.2
-
17
-
-
0034081794
-
Microbial physiological state at low growth rate in natural and engineered ecosystems
-
Konopka A. Microbial physiological state at low growth rate in natural and engineered ecosystems. Curr. Opin. Microbiol. 2000, 3:244-247.
-
(2000)
Curr. Opin. Microbiol.
, vol.3
, pp. 244-247
-
-
Konopka, A.1
-
18
-
-
0031719199
-
Growth kinetics of suspended microbial cells: from single-substrate-controlled growth to mixed-substrate kinetics
-
Kovarova-Kovar K., Egli T. Growth kinetics of suspended microbial cells: from single-substrate-controlled growth to mixed-substrate kinetics. Microbiol. Mol. Biol. Rev. 1998, 62:646-666.
-
(1998)
Microbiol. Mol. Biol. Rev.
, vol.62
, pp. 646-666
-
-
Kovarova-Kovar, K.1
Egli, T.2
-
19
-
-
1242288600
-
Genes involved in the anaerobic degradation of toluene in a denitrifying bacterium, strain EbN1
-
Kube M., Heider J., Amann J., Hufnagel P., Kuhner S., Beck A., Reinhardt R., Rabus R. Genes involved in the anaerobic degradation of toluene in a denitrifying bacterium, strain EbN1. Arch. Microbiol. 2004, 181:182-194.
-
(2004)
Arch. Microbiol.
, vol.181
, pp. 182-194
-
-
Kube, M.1
Heider, J.2
Amann, J.3
Hufnagel, P.4
Kuhner, S.5
Beck, A.6
Reinhardt, R.7
Rabus, R.8
-
20
-
-
16844366648
-
Characterization and microbial utilization of dissolved organic carbon in groundwater contaminated with chlorophenols
-
Langwaldt J.H., Munster U., Puhakka J.A. Characterization and microbial utilization of dissolved organic carbon in groundwater contaminated with chlorophenols. Chemosphere 2005, 59:983-996.
-
(2005)
Chemosphere
, vol.59
, pp. 983-996
-
-
Langwaldt, J.H.1
Munster, U.2
Puhakka, J.A.3
-
21
-
-
69949110616
-
How Geobacteraceae may dominate subsurface biodegradation: physiology of Geobacter metallireducens in slow-growth habitat-simulating retentostats
-
Lin B., Westerhoff H.V., Roling W.F.M. How Geobacteraceae may dominate subsurface biodegradation: physiology of Geobacter metallireducens in slow-growth habitat-simulating retentostats. Environ. Microbiol. 2009, 11:2425-2433.
-
(2009)
Environ. Microbiol.
, vol.11
, pp. 2425-2433
-
-
Lin, B.1
Westerhoff, H.V.2
Roling, W.F.M.3
-
22
-
-
84863229664
-
Nitric oxide regulation of cyclic di-GMP synthesis and hydrolysis in Shewanella woodyi
-
Liu N., Xu Y., Hossain S., Huang N., Coursolle D., Gralnick J.A., Boon E.M. Nitric oxide regulation of cyclic di-GMP synthesis and hydrolysis in Shewanella woodyi. Biochemistry 2012, 51:2087-2099.
-
(2012)
Biochemistry
, vol.51
, pp. 2087-2099
-
-
Liu, N.1
Xu, Y.2
Hossain, S.3
Huang, N.4
Coursolle, D.5
Gralnick, J.A.6
Boon, E.M.7
-
23
-
-
81855206235
-
Geobacter The microbe electric's physiology, ecology, and practical applications
-
Lovley D.R., Ueki T., Zhang T., Malvankar N.S., Shrestha P.M., Flanagan K.A., Aklujkar M., Butler J.E., Giloteaux L., Rotaru A.-E., Holmes D.E., Franks A.E., Orellana R., Risso C., Nevin K.P. Geobacter The microbe electric's physiology, ecology, and practical applications. Adv. Microb. Physiol. 2011, 1-100.
-
(2011)
Adv. Microb. Physiol.
, pp. 1-100
-
-
Lovley, D.R.1
Ueki, T.2
Zhang, T.3
Malvankar, N.S.4
Shrestha, P.M.5
Flanagan, K.A.6
Aklujkar, M.7
Butler, J.E.8
Giloteaux, L.9
Rotaru, A.-E.10
Holmes, D.E.11
Franks, A.E.12
Orellana, R.13
Risso, C.14
Nevin, K.P.15
-
24
-
-
84900497165
-
Physiology of Geobacter metallireducens under excess and limitation of electron donors. Part I. Batch cultivation with excess of carbon sources
-
(accepted for publication)
-
Marozava S., Röling W.F.M., Seifert J., Köffner R., von Bergen M., Meckenstock R.U. Physiology of Geobacter metallireducens under excess and limitation of electron donors. Part I. Batch cultivation with excess of carbon sources. Syst. Appl. Microbiol. 2014, (accepted for publication).
-
(2014)
Syst. Appl. Microbiol.
-
-
Marozava, S.1
Röling, W.F.M.2
Seifert, J.3
Köffner, R.4
von Bergen, M.5
Meckenstock, R.U.6
-
25
-
-
17644418853
-
DNA microarray analysis of nitrogen fixation and Fe(III) reduction in Geobacter sulfurreducens
-
Methe B.A., Webster J., Nevin K., Butler J., Lovley D.R. DNA microarray analysis of nitrogen fixation and Fe(III) reduction in Geobacter sulfurreducens. Appl. Environ. Microbiol. 2005, 71:2530-2538.
-
(2005)
Appl. Environ. Microbiol.
, vol.71
, pp. 2530-2538
-
-
Methe, B.A.1
Webster, J.2
Nevin, K.3
Butler, J.4
Lovley, D.R.5
-
26
-
-
63349088137
-
Quantifying expression of Geobacter spp. oxidative stress genes in pure culture and during in situ uranium bioremediation
-
Mouser P.J., Holmes D.E., Perpetua L.A., DiDonato R., Postier B., Liu A., Lovley D.R. Quantifying expression of Geobacter spp. oxidative stress genes in pure culture and during in situ uranium bioremediation. ISME J. 2009, 3:454-465.
-
(2009)
ISME J.
, vol.3
, pp. 454-465
-
-
Mouser, P.J.1
Holmes, D.E.2
Perpetua, L.A.3
DiDonato, R.4
Postier, B.5
Liu, A.6
Lovley, D.R.7
-
27
-
-
0030898011
-
Characterization of the tol-pal and cyd region of Escherichia coli K-12: Transcript analysis and identification of two new proteins encoded by the cyd operon
-
Muller M.M., Webster R.E. Characterization of the tol-pal and cyd region of Escherichia coli K-12: Transcript analysis and identification of two new proteins encoded by the cyd operon. J. Bacteriol. 1997, 179:2077-2080.
-
(1997)
J. Bacteriol.
, vol.179
, pp. 2077-2080
-
-
Muller, M.M.1
Webster, R.E.2
-
28
-
-
0027460328
-
Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA
-
Muyzer G., de Waal E.C., Uitterlinden A.G. Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA. Appl. Environ. Microbiol. 1993, 59:695-700.
-
(1993)
Appl. Environ. Microbiol.
, vol.59
, pp. 695-700
-
-
Muyzer, G.1
de Waal, E.C.2
Uitterlinden, A.G.3
-
29
-
-
33646014120
-
DNA microarray and proteomic analyses of the RpoS regulon in Geobacter sulfurreducens
-
Núñez C., Esteve-Núñez A., Giometti C., Tollaksen S., Khare T., Lin W., Lovley D.R., Methé B.A. DNA microarray and proteomic analyses of the RpoS regulon in Geobacter sulfurreducens. J. Bacteriol. 2006, 188:2792-2800.
-
(2006)
J. Bacteriol.
, vol.188
, pp. 2792-2800
-
-
Núñez, C.1
Esteve-Núñez, A.2
Giometti, C.3
Tollaksen, S.4
Khare, T.5
Lin, W.6
Lovley, D.R.7
Methé, B.A.8
-
30
-
-
0032976385
-
Microbial communities associated with anaerobic benzene degradation in a petroleum-contaminated aquifer
-
Rooney-Varga J.N., Anderson R.T., Fraga J.L., Ringelberg D., Lovley D.R. Microbial communities associated with anaerobic benzene degradation in a petroleum-contaminated aquifer. Appl. Environ. Microbiol. 1999, 65:3056-3063.
-
(1999)
Appl. Environ. Microbiol.
, vol.65
, pp. 3056-3063
-
-
Rooney-Varga, J.N.1
Anderson, R.T.2
Fraga, J.L.3
Ringelberg, D.4
Lovley, D.R.5
-
31
-
-
34547410912
-
Dynamics of benzene and toluene degradation in Pseudomonas putida F1 in the presence of the alternative substrate succinate
-
Rueegg I., Hafner T., Bucheli-Witschel M., Egli T. Dynamics of benzene and toluene degradation in Pseudomonas putida F1 in the presence of the alternative substrate succinate. Eng. Life Sci. 2007, 7:331-342.
-
(2007)
Eng. Life Sci.
, vol.7
, pp. 331-342
-
-
Rueegg, I.1
Hafner, T.2
Bucheli-Witschel, M.3
Egli, T.4
-
32
-
-
0028804764
-
Organic acid production by Aspergillus niger in recycling culture analyzed by capillary electrophoresis
-
Schrickx J.M., Raedts M.J., Stouthamer A.H., van Verseveld H.W. Organic acid production by Aspergillus niger in recycling culture analyzed by capillary electrophoresis. Anal. Biochem. 1995, 231:175-181.
-
(1995)
Anal. Biochem.
, vol.231
, pp. 175-181
-
-
Schrickx, J.M.1
Raedts, M.J.2
Stouthamer, A.H.3
van Verseveld, H.W.4
-
33
-
-
40149105737
-
Computational and experimental analysis of redundancy in the central metabolism of Geobacter sulfurreducens
-
Segura D., Mahadevan R., Juarez K., Lovley D.R. Computational and experimental analysis of redundancy in the central metabolism of Geobacter sulfurreducens. PLoS Comput. Biol. 2008, 4:e36.
-
(2008)
PLoS Comput. Biol.
, vol.4
-
-
Segura, D.1
Mahadevan, R.2
Juarez, K.3
Lovley, D.R.4
-
34
-
-
84873861133
-
Outer cell surface components essential for Fe(III) oxide reduction by Geobacter metallireducens
-
Smith J.A., Lovley D.R., Tremblay P.-L. Outer cell surface components essential for Fe(III) oxide reduction by Geobacter metallireducens. Appl. Environ. Microbiol. 2012, 79:901-907.
-
(2012)
Appl. Environ. Microbiol.
, vol.79
, pp. 901-907
-
-
Smith, J.A.1
Lovley, D.R.2
Tremblay, P.-L.3
-
35
-
-
60849099919
-
Genome-scale constraint-based modeling of Geobacter metallireducens
-
Sun J., Sayyar B., Butler J.E., Pharkya P., Fahland T.R., Famili I., Schilling C.H., Lovley D.R., Mahadevan R. Genome-scale constraint-based modeling of Geobacter metallireducens. BMC Syst. Biol. 2009, 3:174.
-
(2009)
BMC Syst. Biol.
, vol.3
, pp. 174
-
-
Sun, J.1
Sayyar, B.2
Butler, J.E.3
Pharkya, P.4
Fahland, T.R.5
Famili, I.6
Schilling, C.H.7
Lovley, D.R.8
Mahadevan, R.9
-
36
-
-
84861211352
-
Physiological and proteomic adaptation of Aromatoleum aromaticum EbN1 to low growth rates in benzoate-limited, anoxic chemostats
-
Trautwein K., Lahme S., Woehlbrand L., Feenders C., Mangelsdorf K., Harder J., Steinbuechel A., Blasius B., Reinhardt R., Rabus R. Physiological and proteomic adaptation of Aromatoleum aromaticum EbN1 to low growth rates in benzoate-limited, anoxic chemostats. J. Bacteriol. 2012, 194:2165-2180.
-
(2012)
J. Bacteriol.
, vol.194
, pp. 2165-2180
-
-
Trautwein, K.1
Lahme, S.2
Woehlbrand, L.3
Feenders, C.4
Mangelsdorf, K.5
Harder, J.6
Steinbuechel, A.7
Blasius, B.8
Reinhardt, R.9
Rabus, R.10
-
37
-
-
84856710418
-
A genetic system for Geobacter metallireducens: role of the flagellin and pilin in the reduction of Fe(III) oxide
-
Tremblay P.-L., Aklujkar M., Leang C., Nevin K.P., Lovley D. A genetic system for Geobacter metallireducens: role of the flagellin and pilin in the reduction of Fe(III) oxide. Environ. Microbiol. Rep. 2012, 4:82-88.
-
(2012)
Environ. Microbiol. Rep.
, vol.4
, pp. 82-88
-
-
Tremblay, P.-L.1
Aklujkar, M.2
Leang, C.3
Nevin, K.P.4
Lovley, D.5
-
38
-
-
84861217024
-
Role of the NiFe hydrogenase Hya in oxidative stress defense in Geobacter sulfurreducens
-
Tremblay P.-L., Lovley D.R. Role of the NiFe hydrogenase Hya in oxidative stress defense in Geobacter sulfurreducens. J. Bacteriol. 2012, 194:2248-2253.
-
(2012)
J. Bacteriol.
, vol.194
, pp. 2248-2253
-
-
Tremblay, P.-L.1
Lovley, D.R.2
-
39
-
-
0035213758
-
Short- and long-term changes in proteome composition and kinetic properties in a culture of Escherichia coli during transition from glucose-excess to glucose-limited growth conditions in continuous culture and vice versa
-
Wick L.M., Quadroni M., Egli T. Short- and long-term changes in proteome composition and kinetic properties in a culture of Escherichia coli during transition from glucose-excess to glucose-limited growth conditions in continuous culture and vice versa. Environ. Microbiol. 2001, 3:588-599.
-
(2001)
Environ. Microbiol.
, vol.3
, pp. 588-599
-
-
Wick, L.M.1
Quadroni, M.2
Egli, T.3
|