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Volumn 9, Issue 1, 2014, Pages

Mapping of the gynoecy in bitter gourd (Momordica charantia) using RAD-seq analysis

Author keywords

[No Author keywords available]

Indexed keywords

DNA; GENOMIC DNA;

EID: 84900446583     PISSN: None     EISSN: 19326203     Source Type: Journal    
DOI: 10.1371/journal.pone.0087138     Document Type: Article
Times cited : (48)

References (45)
  • 1
    • 0001215980 scopus 로고
    • Dioecy and its correlates in the flowering plants
    • Renner SS, Ricklefs RE (1995) Dioecy and its correlates in the flowering plants. Am J Bot 82: 596-606.
    • (1995) Am J Bot , vol.82 , pp. 596-606
    • Renner, S.S.1    Ricklefs, R.E.2
  • 2
    • 79955623035 scopus 로고    scopus 로고
    • Sex chromosomes in land plants
    • doi: 10.1146/annurev-arplant-042110-103914
    • Ming R, Bendahmane A, Renner SS (2011) Sex chromosomes in land plants. Annu Rev Plant Biol 62: 485-514. doi: 10.1146/annurev-arplant-042110-103914.
    • (2011) Annu Rev Plant Biol , vol.62 , pp. 485-514
    • Ming, R.1    Bendahmane, A.2    Renner, S.S.3
  • 3
    • 77957216295 scopus 로고
    • Inheritance of new sex forms in Cucumis melo L
    • Poole CF, Grimball PC (1939) Inheritance of new sex forms in Cucumis melo L. J Hered 30: 21-25.
    • (1939) J Hered , vol.30 , pp. 21-25
    • Poole, C.F.1    Grimball, P.C.2
  • 4
    • 49449083099 scopus 로고    scopus 로고
    • A conserved mutation in an ethylene biosynthesis enzyme leads to andromonoecy in melons
    • doi: 10.1126/science.1159023
    • Boualem A, Fergany M, Fernandez R, Troadec C, Martin A, et al. (2008) A conserved mutation in an ethylene biosynthesis enzyme leads to andromonoecy in melons. Science 321: 836-838. doi: 10.1126/science.1159023.
    • (2008) Science , vol.321 , pp. 836-838
    • Boualem, A.1    Fergany, M.2    Fernandez, R.3    Troadec, C.4    Martin, A.5
  • 5
    • 70350504436 scopus 로고    scopus 로고
    • A transposon-induced epigenetic change leads to sex determination in melon
    • doi: 10.1038/nature08498
    • Martin A, Troadec C, Boualem A, Rajab M, Fernandez R, et al. (2009) A transposon-induced epigenetic change leads to sex determination in melon. Nature 461: 1135-1138. doi: 10.1038/nature08498.
    • (2009) Nature , vol.461 , pp. 1135-1138
    • Martin, A.1    Troadec, C.2    Boualem, A.3    Rajab, M.4    Fernandez, R.5
  • 6
    • 34250581239 scopus 로고
    • Study of the inheritance of sex expression in the cucumber: The interaction of major genes with modifying genetic and non-genetic factors
    • Galun E (1961) Study of the inheritance of sex expression in the cucumber: the interaction of major genes with modifying genetic and non-genetic factors. Genetica 32: 134-163.
    • (1961) Genetica , vol.32 , pp. 134-163
    • Galun, E.1
  • 7
    • 0002680423 scopus 로고
    • Investigation of sex determination in cucumber (Cucumis sativus L.)
    • Kubicki B (1969) Investigation of sex determination in cucumber (Cucumis sativus L.). Genetica Polonica 10: 69-143.
    • (1969) Genetica Polonica , vol.10 , pp. 69-143
    • Kubicki, B.1
  • 9
    • 11144345077 scopus 로고    scopus 로고
    • Molecular characterization and isolation of the F/f gene for femaleness in cucumber (Cucumis sativus L.)
    • DOI 10.1007/s00122-004-1793-7
    • Mibus H, Tatlioglu T (2004) Molecular characterization and isolation of the F/f gene for femaleness in cucumber (Cucumis sativus L.). Theor Appl Genet 109: 1669-1676. (Pubitemid 40024932)
    • (2004) Theoretical and Applied Genetics , vol.109 , Issue.8 , pp. 1669-1676
    • Mibus, H.1    Tatlioglu, T.2
  • 10
    • 70350164747 scopus 로고    scopus 로고
    • Molecular isolation of the M gene suggests that a conserved-residue conversion induces the formation of bisexual flowers in cucumber plants
    • doi: 10.1534/genetics.109.104737
    • Li Z, Huang S, Liu S, Pan J, Zhang Z, et al. (2009) Molecular isolation of the M gene suggests that a conserved-residue conversion induces the formation of bisexual flowers in cucumber plants. Genetics 182: 1381-1385. doi: 10.1534/genetics.109.104737.
    • (2009) Genetics , vol.182 , pp. 1381-1385
    • Li, Z.1    Huang, S.2    Liu, S.3    Pan, J.4    Zhang, Z.5
  • 11
    • 84866676020 scopus 로고    scopus 로고
    • A putative positive feedback regulation mechanism in CsACS2 expression suggests a modified model for sex determination in cucumber (Cucumis sativus L.)
    • doi: 10.1093/jxb/ers123
    • Li Z, Wang S, Tao Q, Pan J, Si L, et al. (2012) A putative positive feedback regulation mechanism in CsACS2 expression suggests a modified model for sex determination in cucumber (Cucumis sativus L.). J Exp Bot 63: 4475-4484. doi: 10.1093/jxb/ers123.
    • (2012) J Exp Bot , vol.63 , pp. 4475-4484
    • Li, Z.1    Wang, S.2    Tao, Q.3    Pan, J.4    Si, L.5
  • 12
    • 73149112829 scopus 로고    scopus 로고
    • A three-genome phylogeny of Momordica (Cucurbitaceae) suggests seven returns from dioecy to monoecy and recent long-distance dispersal to Asia
    • doi: 10.1016/j.ympev.2009.08.006
    • Schaefer H, Renner SS (2010) A three-genome phylogeny of Momordica (Cucurbitaceae) suggests seven returns from dioecy to monoecy and recent long-distance dispersal to Asia. Mol Phylogenet Evol 54: 553-560. doi: 10.1016/j.ympev.2009.08.006.
    • (2010) Mol Phylogenet Evol , vol.54 , pp. 553-560
    • Schaefer, H.1    Renner, S.S.2
  • 13
    • 0029743088 scopus 로고    scopus 로고
    • Sexual crossing between two genetically female plants and sex genetics of kakrol (Momordica dioica Roxb.)
    • Hossain MA, Islam M, Ali M (1996) Sexual crossing between two genetically female plants and sex genetics of kakrol (Momordica dioica Roxb.). Euphytica 90: 121-125. (Pubitemid 26289360)
    • (1996) Euphytica , vol.90 , Issue.1 , pp. 121-125
    • Hossain, M.A.1    Islam, M.2    Ali, M.3
  • 14
    • 33745656365 scopus 로고    scopus 로고
    • Inheritance of gynoecism in bitter gourd (Momordica charantia L.)
    • DOI 10.1093/jhered/esj028
    • Ram D, Kumar S, Singh M, Rai M, Kalloo G (2006) Inheritance of Gynoecism in Bitter Gourd (Momordica charantia L.) J Hered 97: 294-295. doi:10.1093/jhered/esj028. (Pubitemid 43966699)
    • (2006) Journal of Heredity , vol.97 , Issue.3 , pp. 294-295
    • Ram, D.1    Kumar, S.2    Singh, M.3    Rai, M.4    Kalloo, G.5
  • 15
    • 77955994590 scopus 로고    scopus 로고
    • Development and characterization of polymorphic microsatellite markers in Momordica charantia (Cucurbitaceae)
    • doi: 10.3732/ajb.1000153
    • Wang SZ, Pan L, Hu K, Chen CY, Ding Y (2010) Development and characterization of polymorphic microsatellite markers in Momordica charantia (Cucurbitaceae). Am J Bot 97: e75-78. doi: 10.3732/ajb.1000153.
    • (2010) Am J Bot , vol.97
    • Wang, S.Z.1    Pan, L.2    Hu, K.3    Chen, C.Y.4    Ding, Y.5
  • 16
    • 84860566619 scopus 로고    scopus 로고
    • Isolation and characterization of 10 SSR markers of Momordica charantia (Cucurbitaceae)
    • doi: 10.3732/ajb.1100277
    • Guo DL, Zhang JP, Xue YM, Hou XG (2012) Isolation and characterization of 10 SSR markers of Momordica charantia (Cucurbitaceae). Am J Bot 99: e182-183. doi: 10.3732/ajb.1100277.
    • (2012) Am J Bot , vol.99
    • Guo, D.L.1    Zhang, J.P.2    Xue, Y.M.3    Hou, X.G.4
  • 17
    • 84857207047 scopus 로고    scopus 로고
    • SNP discovery and genotyping for evolutionary genetics using RAD sequencing
    • doi: 10.1007/978-1-61779-228-1-9
    • Etter PD, Bassham S, Hohenlohe PA, Johnson EA, Cresko WA (2011) SNP discovery and genotyping for evolutionary genetics using RAD sequencing. Methods Mol Biol 772: 157-78. doi: 10.1007/978-1-61779-228-1-9.
    • (2011) Methods Mol Biol , vol.772 , pp. 157-178
    • Etter, P.D.1    Bassham, S.2    Hohenlohe, P.A.3    Johnson, E.A.4    Cresko, W.A.5
  • 18
    • 54449098752 scopus 로고    scopus 로고
    • Rapid SNP discovery and genetic mapping using sequenced RAD markers
    • doi: 10.1371/journal.pone.0003376
    • Baird NA, Etter PD, Atwood TS, Currey MC, Shiver AL, et al. (2008) Rapid SNP discovery and genetic mapping using sequenced RAD markers. PLoS One 3: e3376. doi: 10.1371/journal.pone.0003376.
    • (2008) PLoS One , vol.3
    • Baird, N.A.1    Etter, P.D.2    Atwood, T.S.3    Currey, M.C.4    Shiver, A.L.5
  • 19
    • 79955783956 scopus 로고    scopus 로고
    • A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species
    • doi: 10.1371/journal.pone.0019379
    • Elshire RJ, Glaubitz JC, Sun Q, Poland JA, Kawamoto K, et al. (2011) A robust, simple genotyping-by-sequencing (GBS) approach for high diversity species. PLoS One 6: e19379. doi: 10.1371/journal.pone.0019379.
    • (2011) PLoS One , vol.6
    • Elshire, R.J.1    Glaubitz, J.C.2    Sun, Q.3    Poland, J.A.4    Kawamoto, K.5
  • 20
    • 33845616267 scopus 로고    scopus 로고
    • AntMap: Constructing genetic linkage maps using an ant colony optimization algorithm
    • DOI 10.1270/jsbbs.56.371
    • Iwata H, Ninomiya S (2006) AntMap: constructing genetic linkage maps using an ant colony optimization algorithm. Breed Sci 56: 371-377. (Pubitemid 44953713)
    • (2006) Breeding Science , vol.56 , Issue.4 , pp. 371-377
    • Iwata, H.1    Ninomiya, S.2
  • 21
    • 80055111869 scopus 로고    scopus 로고
    • Primer extension capture: Targeted sequence retrieval from heavily degraded DNA sources
    • doi: 10.3791/1573
    • Briggs AW, Good JM, Green RE, Krause J, Maricic T, et al. (2009) Primer extension capture: targeted sequence retrieval from heavily degraded DNA sources. J Vis Exp 3: 1573. doi: 10.3791/1573.
    • (2009) J Vis Exp , vol.3 , pp. 1573
    • Briggs, A.W.1    Good, J.M.2    Green, R.E.3    Krause, J.4    Maricic, T.5
  • 22
    • 17044373944 scopus 로고    scopus 로고
    • The Invader assay for SNP genotyping
    • Olivier M (2005) The Invader assay for SNP genotyping. Mutat Res 573: 103-110.
    • (2005) Mutat Res , vol.573 , pp. 103-110
    • Olivier, M.1
  • 23
    • 77957812529 scopus 로고    scopus 로고
    • High-throughput SuperSAGE for digital gene expression analysis of multiple samples using next generation sequencing
    • doi: 10.1371/journal.pone.0012010
    • Matsumura H, Yoshida K, Luo S, Kimura E, Fujibe T, et al. (2010) High-throughput SuperSAGE for digital gene expression analysis of multiple samples using next generation sequencing. PLoS One 5: e12010. doi: 10.1371/journal.pone.0012010.
    • (2010) PLoS One , vol.5
    • Matsumura, H.1    Yoshida, K.2    Luo, S.3    Kimura, E.4    Fujibe, T.5
  • 24
    • 84863796939 scopus 로고    scopus 로고
    • Role of ethylene receptors during senescence and ripening in horticultural crops
    • doi: 10.4161/psb.20321
    • Agarwal G, Choudhary D, Singh VP, Arora A (2012) Role of ethylene receptors during senescence and ripening in horticultural crops. Plant Signal Behav 7: 827-846. doi: 10.4161/psb.20321.
    • (2012) Plant Signal Behav , vol.7 , pp. 827-846
    • Agarwal, G.1    Choudhary, D.2    Singh, V.P.3    Arora, A.4
  • 25
    • 0035781190 scopus 로고    scopus 로고
    • Molecular biology of fruit maturation and ripening
    • Giovannoni J (2001) Molecular biology of fruit maturation and ripening. Ann Rev Plant Physiol Plant Mol Biol 52: 725-749.
    • (2001) Ann Rev Plant Physiol Plant Mol Biol , vol.52 , pp. 725-749
    • Giovannoni, J.1
  • 26
    • 37849052292 scopus 로고    scopus 로고
    • Ethylene-promoted elongation: An adaptation to submergence stress
    • Jackson MB (2008) Ethylene-promoted elongation: an adaptation to submergence stress. Ann Bot 101: 229-248.
    • (2008) Ann Bot , vol.101 , pp. 229-248
    • Jackson, M.B.1
  • 27
    • 77953600890 scopus 로고    scopus 로고
    • Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types
    • doi: 10.1186/1471-2164-11-384
    • Guo S, Zheng Y, Joung JG, Liu S, Zhang Z, et al. (2010) Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types. BMC Genomics 11: 384. doi: 10.1186/1471-2164-11-384.
    • (2010) BMC Genomics , vol.11 , pp. 384
    • Guo, S.1    Zheng, Y.2    Joung, J.G.3    Liu, S.4    Zhang, Z.5
  • 28
    • 79956189843 scopus 로고    scopus 로고
    • Analysis of expressed sequence tags generated from full-length enriched cDNA libraries of melon
    • doi: 10.1186/1471-2164-12-252
    • Clepet C, Joobeur T, Zheng Y, Jublot D, Huang M, et al. (2011) Analysis of expressed sequence tags generated from full-length enriched cDNA libraries of melon. BMC Genomics 12: 252. doi: 10.1186/1471-2164-12-252.
    • (2011) BMC Genomics , vol.12 , pp. 252
    • Clepet, C.1    Joobeur, T.2    Zheng, Y.3    Jublot, D.4    Huang, M.5
  • 29
    • 0021753169 scopus 로고
    • Further studies of auxin and ACC induced feminization in the cucumber plant using ethylene inhibitors
    • Takahashi H, Jaffe MJ (1984) Further studies of auxin and ACC induced feminization in the cucumber plant using ethylene inhibitors. Phyton 44: 81-86.
    • (1984) Phyton , vol.44 , pp. 81-86
    • Takahashi, H.1    Jaffe, M.J.2
  • 30
    • 0347754053 scopus 로고
    • Chemical Regulation of Flower Sex Expression and Vegetative Growth in Cucumis sativus L
    • Mitchell WD, Wittwer SH (1962) Chemical Regulation of Flower Sex Expression and Vegetative Growth in Cucumis sativus L. Science 136: 880-881.
    • (1962) Science , vol.136 , pp. 880-881
    • Mitchell, W.D.1    Wittwer, S.H.2
  • 31
    • 84878011473 scopus 로고    scopus 로고
    • Genotyping by RAD sequencing enables mapping of fatty acid composition traits in perennial ryegrass (Lolium perenne (L.))
    • doi: 10.1111/pbi.12045
    • Hegarty M, Yadav R, Lee M, Armstead I, Sanderson R, et al. (2013) Genotyping by RAD sequencing enables mapping of fatty acid composition traits in perennial ryegrass (Lolium perenne (L.)). Plant Biotechnol J 11: 572-581. doi: 10.1111/pbi.12045.
    • (2013) Plant Biotechnol J , vol.11 , pp. 572-581
    • Hegarty, M.1    Yadav, R.2    Lee, M.3    Armstead, I.4    Sanderson, R.5
  • 32
    • 84865082446 scopus 로고    scopus 로고
    • A RAD tag derived marker based eggplant linkage map and the location of QTLs determining anthocyanin pigmentation
    • doi: 10.1371/journal.pone.0043740
    • Barchi L, Lanteri S, Portis E, Valè G, Volante A, et al. (2012) A RAD tag derived marker based eggplant linkage map and the location of QTLs determining anthocyanin pigmentation. PLoS One. 7: e43740. doi: 10.1371/journal.pone.0043740.
    • (2012) PLoS One , vol.7
    • Barchi, L.1    Lanteri, S.2    Portis, E.3    Valè, G.4    Volante, A.5
  • 33
    • 84865706478 scopus 로고    scopus 로고
    • Application of next-generation sequencing for rapid marker development in molecular plant breeding: A case study on anthracnose disease resistance in Lupinus angustifolius L
    • doi: 10.1186/1471-2164-13-318
    • Yang H, Tao Y, Zheng Z, Li C, Sweetingham MW, et al. (2012) Application of next-generation sequencing for rapid marker development in molecular plant breeding: a case study on anthracnose disease resistance in Lupinus angustifolius L. BMC Genomics 13: 318. doi: 10.1186/1471-2164-13-318.
    • (2012) BMC Genomics , vol.13 , pp. 318
    • Yang, H.1    Tao, Y.2    Zheng, Z.3    Li, C.4    Sweetingham, M.W.5
  • 34
    • 79959297013 scopus 로고    scopus 로고
    • Mapping with RAD (restriction-site associated DNA) markers to rapidly identify QTL for stem rust resistance in Lolium perenne
    • doi: 10.1007/s00122-011-1546-3
    • Pfender WF, Saha MC, Johnson EA, Slabaugh MB (2011) Mapping with RAD (restriction-site associated DNA) markers to rapidly identify QTL for stem rust resistance in Lolium perenne. Theor Appl Genet 122: 1467-1480. doi: 10.1007/s00122-011-1546-3.
    • (2011) Theor Appl Genet , vol.122 , pp. 1467-1480
    • Pfender, W.F.1    Saha, M.C.2    Johnson, E.A.3    Slabaugh, M.B.4
  • 35
    • 78650792488 scopus 로고    scopus 로고
    • Construction and application for QTL analysis of a Restriction Site Associated DNA (RAD) linkage map in barley
    • doi: 10.1186/1471-2164-12-4
    • Chutimanitsakun Y, Nipper RW, Cuesta-Marcos A, Cistué L, Corey A, et al. (2010) Construction and application for QTL analysis of a Restriction Site Associated DNA (RAD) linkage map in barley. BMC Genomics 12: 4. doi: 10.1186/1471-2164-12-4.
    • (2010) BMC Genomics , vol.12 , pp. 4
    • Chutimanitsakun, Y.1    Nipper, R.W.2    Cuesta-Marcos, A.3    Cistué, L.4    Corey, A.5
  • 36
    • 84863630901 scopus 로고    scopus 로고
    • Multiple sex-associated regions and a putative sex chromosome in zebrafish revealed by RAD mapping and population genomics
    • doi: 10.1371/journal.pone.0040701
    • Anderson JL, Rodríguez Marí A, Braasch I, Amores A, Hohenlohe P, et al. (2012) Multiple sex-associated regions and a putative sex chromosome in zebrafish revealed by RAD mapping and population genomics. PLoS One 7: e40701. doi: 10.1371/journal.pone.0040701.
    • (2012) PLoS One , vol.7
    • Anderson, J.L.1    Rodríguez Marí, A.2    Braasch, I.3    Amores, A.4    Hohenlohe, P.5
  • 37
    • 79960078798 scopus 로고    scopus 로고
    • Cytotaxonomical analysis of Momordica L. (Cucurbitaceae) species of Indian occurrence
    • Bharathi LK, Munshi AD, Vinod, Chandrashekaran S, Behera TK, et al. (2011) Cytotaxonomical analysis of Momordica L. (Cucurbitaceae) species of Indian occurrence. J Genet 90: 21-30.
    • (2011) J Genet , vol.90 , pp. 21-30
    • Bharathi, L.K.1    Munshi, A.D.2    Vinod3    Chandrashekaran, S.4    Behera, T.K.5
  • 38
    • 79959435199 scopus 로고    scopus 로고
    • Genome-wide genetic marker discovery and genotyping using next-generation sequencing
    • doi: 10.1038/nrg3012
    • Davey JW, Hohenlohe PA, Etter PD, Boone JQ, Catchen JM, et al. (2011) Genome-wide genetic marker discovery and genotyping using next-generation sequencing. Nat Rev Genet 12: 499-510. doi: 10.1038/nrg3012.
    • (2011) Nat Rev Genet , vol.12 , pp. 499-510
    • Davey, J.W.1    Hohenlohe, P.A.2    Etter, P.D.3    Boone, J.Q.4    Catchen, J.M.5
  • 39
    • 73449142861 scopus 로고    scopus 로고
    • DNA sequence capture and enrichment by microarray followed by next-generation sequencing for targeted resequencing: Neurofibromatosis type 1 gene as a model
    • doi: 10.1373/clinchem.2009.132639
    • Chou LS, Liu CS, Boese B, Zhang X, Mao R (2010) DNA sequence capture and enrichment by microarray followed by next-generation sequencing for targeted resequencing : neurofibromatosis type 1 gene as a model. Clin Chem 56: 62-72. doi: 10.1373/clinchem.2009.132639.
    • (2010) Clin Chem , vol.56 , pp. 62-72
    • Chou, L.S.1    Liu, C.S.2    Boese, B.3    Zhang, X.4    Mao, R.5
  • 40
    • 78049514700 scopus 로고    scopus 로고
    • Whole human exome capture for high-throughput sequencing
    • doi: 10.1139/g10-025
    • Kim DW, Nam SH, Kim RN, Choi SH, Park HS (2010) Whole human exome capture for high-throughput sequencing. Genome 53: 568-574. doi: 10.1139/g10-025.
    • (2010) Genome , vol.53 , pp. 568-574
    • Kim, D.W.1    Nam, S.H.2    Kim, R.N.3    Choi, S.H.4    Park, H.S.5
  • 43
    • 0033428098 scopus 로고    scopus 로고
    • Clinical, genetic, and pharmacogenetic applications of the Invader assay
    • Kwiatkowski RW, Lyamichev V, de Arruda M, Neri B (1999) Clinical, genetic, and pharmacogenetic applications of the Invader assay. Mol Diagn 4: 353-364. (Pubitemid 30036375)
    • (1999) Molecular Diagnosis , vol.4 , Issue.4 , pp. 353-364
    • Kwiatkowski, R.W.1
  • 45
    • 0035154453 scopus 로고    scopus 로고
    • High-throughput SNP genotyping by allele-specific PCR with universal energy-transfer-labeled primers
    • DOI 10.1101/gr.157901
    • Myakishev MV, Khripin Y, Hu S, Hamer DH (2001) High-throughput SNP genotyping by allele-specific PCR with universal energy-transfer-labeled primers. Genome Res 11: 163-169. (Pubitemid 32117962)
    • (2001) Genome Research , vol.11 , Issue.1 , pp. 163-169
    • Myakishev, M.V.1    Khripin, Y.2    Hu, S.3    Hamer, D.H.4


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