Karyotype divergence and spreading of 5S rDNA sequences between genomes of two species: Darter and emerald gobies (Ctenogobius, Gobiidae)

Cytogenetic and Genome Research

Volumn 142, Issue 3, 2014, Pages 197-203

  Lima Filho, P A ^a,c   Bertollo, L A C ^b   Cioffi, M B ^b   Costa, G W W F ^a   Molina, W F ^a  

^a FEDERAL UNIVERSITY OF RIO GRANDE DO NORTE   (Brazil)

^b FEDERAL UNIVERSITY OF SÃO CARLOS   (Brazil)

^c Centro Federal de Educacao Tecnologica do Rio Grande do Norte   (Brazil)

Author keywords

Fish cytogenetics; Heterochromatinization; Karyotype evolution; Multigene families; Repetitive sequence expansion

Indexed keywords

DNA 18S; DNA 5S;

ARTICLE; CHROMOSOME; CHROMOSOME REARRANGEMENT; CTENOGOBIUS; CTENOGOBIUS BOLEOSOMA; CTENOGOBIUS SMARAGDUS; CYTOGENETICS; DNA SEQUENCE; GENE MAPPING; GENETIC VARIABILITY; GENOME; GOBIIDAE; KARYOTYPE; KARYOTYPING; MARINE SPECIES; METAPHASE CHROMOSOME; MULTIGENE FAMILY; NONHUMAN; PRIORITY JOURNAL; RIBOSOME; ACROCENTRIC CHROMOSOME; C BANDING; CHROMOSOME NUMBER; CHROMOSOME PAIRING; FISH;

ANIMALS; CHROMOSOME ABERRATIONS; CHROMOSOME BANDING; CHROMOSOME MAPPING; DNA, RIBOSOMAL; EVOLUTION, MOLECULAR; FISHES; GENETIC VARIATION; KARYOTYPE; RNA, RIBOSOMAL, 18S; RNA, RIBOSOMAL, 5S; SEQUENCE ANALYSIS, RNA;

CTENOGOBIUS; CTENOGOBIUS BOLEOSOMA; GOBIIDAE; GOBIONELLUS SMARAGDUS;

EID: 84900323438     PISSN: 14248581     EISSN: 1424859X     Source Type: Journal    
DOI: 10.1159/000360492     Document Type: Article

References (63)

1. Abel LDS, Mantovani M, Moreira-Filho O: Chromosomal distribution of the As51 satellite DNA in two species complexes of the genus Astyanax (Pisces, Characidae). Gen Mol Biol 29: 448-452 (2006).
2. Amores A, Giles V, Thode G, Alvarez MC: Adaptive character of a Robertsonian fusion in chromosomes of the fish Gobius paganellus (Pisces, Perciformes). Heredity 65: 151-155 (1990).
3. Arai R, Sawada Y: Chromosomes of Japanese gobioid fishes. Bull Nat Sci Mus Tokyo 17: 97-105 (1974).
4. Calado LL, Bertollo LAC, Costa GWWF, Molina WF: Cytogenetic studies of Atlantic mojarras (Perciformes - Gerreidae): chromosomal mapping of 5S and 18S ribosomal genes using double FISH. Aquac Res 44: 829-835 (2012).
5. Canapa A, Cerioni PN, Barucca M, Olmo E, Caputo V: A centromeric satellite DNA may be involved in heterochromatin compactness in gobiid fishes. Chromosome Res 10: 297-304 (2002).
6. Caputo V: Nucleolar organizer (NOR) location and cytotaxonomic implications in six species of gobiid fishes (Perciformes, Gobiidae). Ital J Zool 65: 93-99 (1998).
7. Caputo V, Marchegiani F, Sorice M, Olmo E: Heterochromatin heterogeneity and chromosome variability in four species of gobiid fishes (Perciformes: Gobiidae). Cytogenet Cell Genet 79: 266-271 (1997).
8. Caputo V, Caniglia ML, Machella N: The chromosomal complement of Aphia minuta, a paedomorphic goby. J Fish Biol 55: 455-458 (1999).
9. Carvalho R, Soares-Filho WS, Brasileiro-Vidal AC, Guerra M: The relationships among lemons, limes and citron: a chromosomal comparison. Cytogenet Genome Res 109: 276-282 (2005).
10. Cioffi MB, Bertollo LAC: Chromosomal distribution and evolution of repetitive DNAs in fish. Genome Dyn 7: 197-221 (2012).
11. Cioffi MB, Martins C, Centofante L, Jacobina U, Bertollo LAC: Chromosomal variability among allopatric populations of Erythrinidae fish Hoplias malabaricus : mapping of three classes of repetitive DNAs. Cytogenet Genome Res 125: 132-141 (2009).
12. Cioffi MB, Martins C, Bertollo LAC: Chromosome spreading of associated transposable elements and ribosomal DNA in the fish Erythrinus erythrinus. Implications for genome change and karyoevolution in fish. BMC Evol Biol 10: 271 (2010).
13. Cioffi MB, Molina WF, Artoni RF, Bertollo LAC: Chromosomes as tools for discovering biodiversity - the case of Erythrinidae fish family, in Tirunilai P (ed): Recent Trends in Cytogenetic Studies - Methodologies and Applications (In Tech Publisher, Rijeka 2012). http://www.intechopen.com/doi:10.5772/35890.
14. Cipriano RR, Fenocchio AS, Artoni RF, Molina W, Noleto RB, et al: Chromosomal studies of five species of the marine fishes from the Paranagua Bay and the karyotypic diversity in the marine Teleostei of the Brazilian coast. Braz Arch Biol Technol 51: 303-314 (2008).
15. David P, Chen NWG, Pedrosa-Harand A, Thareau V, Sevignac M, et al: A nomadic subtelomeric disease resistance gene cluster in common bean. Plant Physiol 151: 1048-1065 (2009).
16. Dawson MN, Louie KD, Barlow M, Jacobs DK, Swift CC: Comparative phylogeography of sympatric sister species, Clevelandia ios and Eucyclogobius newberryi (Teleostei: Gobiidae), across the California transition zone. Mol Ecol 11: 1065-1075 (2002).
17. Depczynski M, Bellwood DR: The role of cryptobenthic reef fishes in coral reef trophodynamics. Mar Ecol Prog Ser 256: 183-191 (2003).
18. Ene AC: Chromosomal polymorphism in the goby Neogobius eurycephalus (Perciformes: Gobiidae). Mar Biol 142: 583-588 (2003).
19. Galetti PM Jr, Aguilar CT, Molina WF: An overview on marine fish cytogenetics. Hydrobiologia 420: 55-62 (2000).
20. Galvao TB, Bertollo LAC, Molina WF: Chromosomal complements of some Atlantic Blennioidei and Gobioidei species (Perciformes). Comp Cytogenet 5: 259-275 (2011).
21. Giles V, Thode G, Alvarez MC: A new Robertsonian fusion in the multiple chromosome polymorphism of a Mediterranean population of Gobius paganellus (Gobiidae, Perciformes). Heredity 55: 255-260 (1985).
22. Gold JR, Li C, Shipley NS, Powers PK: Improved methods for working with fish chromosomes with a review of metaphase chromosome banding. J Fish Biol 37: 563-575 (1990).
23. Gonzalez-Garcia M, Gonzalez-Sanchez M, Puertas MJ: The high variability of subtelomeric heterochromatin and connections between nonhomologous chromosomes, suggest frequent ectopic recombination in rye meiocytes. Cytogenet Genome Res 115: 179-185 (2006).
24. Hastie ND, Allshire RC: Human telomeres: fusion and interstitial sites. Trends Genet 5: 326-331 (1989).
25. Howell WM, Black DA: Controlled silver staining of nucleolus organizer regions with protective colloidal developer: a 1-step method. Experientia 36: 1014-1015 (1980).
26. Kalendar R, Tanskanen J, Chang W, Antonius K, Sela H, et al: Cassandra retrotransposons carry independently transcribed 5S RNA. Proc Natl Acad Sci USA 105: 5833-5838 (2008).
27. Levan A, Fredga K, Sandberg AA: Nomenclature for centromeric position on chromosomes. Hereditas 52: 201-220 (1964).
28. Lima-Filho PA, Cioffi MB, Bertollo LAC, Molina WF: Chromosomal and morphological divergences in Atlantic populations of the frillfin goby Bathygobius soporator (Gobiidae, Perciformes). J Exp Mar Biol Ecol 43: 63-70 (2012).
29. Linardopoulou EV, Williams EM, Fan YX, Friedman C, Young JM, Trask BJ: Human subtelomeres are hot spots of interchromosomal recombination and segmental duplication. Nature 437: 94-100 (2005).
30. Mandrioli M, Manicardi GC, Machella N, Caputo V: Molecular and cytogenetic analysis of the goby Gobius niger (Teleostei, Gobiidae). Genetica 110: 73-78 (2001).
31. Mantovani M, Abel LDS, Mestriner CA, Moreira-Filho O: Evidence of the differentiated structural arrangement of constitutive heterochromatin between two populations of Astyanax scabripinnis (Pisces, Characidae). Genet Mol Biol 27: 536-542 (2004).
32. Martins C, Ferreira IA, Oliveira C, Foresti F, Galetti PM Jr: A tandemly repetitive centromeric DNA sequence of the fish Hoplias malabaricus (Characiformes: Erythrinidae) is derived from 5S rDNA. Genetica 127: 133-141 (2006).
33. Menezes NA, Buckup PA, Figueiredo JL, Moura RL: Catalogo das especies de peixes marinhos do Brasil. Sao Paulo, Brazil, Museu de Zoologia da Universidade de Sao Paulo (2003).
34. Molina WF: Chromosomal changes and stasis in marine fish groups, in Pisano E, Ozouf-Costaz C, Foresti F, Kapoor BG (eds): Fish Cytogenetics, pp 69-110 (Science Publishers, Enfield 2007).
35. Molina WF, Galetti PM Jr: Karyotypic changes associated to the dispersive potential on Pomacentridae (Pisces, Perciformes). J Exp Mar Biol Ecol 309: 109-119 (2004).
36. Molina WF, Shibatta OA, Galetti PM Jr: Chromosomal evidence of population subdivision in the freshwater fish Leporinus elongatus in the Upper Parana River basin. Genet Mol Biol 31: 270-274 (2008).
37. Molina WF, Alves DEO, Araujo WC, Martinez PA, Silva MF, Costa GW: Performance of human immunostimulating agents in the improvement of fish cytogenetic preparations. Genet Mol Res 9: 1807-1814 (2010).
38. Motta-Neto CC, Cioffi MB, Bertollo LAC, Molina WF: Extensive chromosomal homologies and evidence of karyotypic stasis in Atlantic grunts of the genus Haemulon (Perciformes). J Exp Mar Biol Ecol 401: 75-79 (2011).
39. Nayak K, Khuda-Bukhsh AR: Chromosomes of two species of fishes Apocryptes (Gobiidae: Pisces). Environ Ecol 5: 371-373 (1987).
40. Nelson JS: Fishes of the World (John Wiley & Sons, Inc., New Jersey 2006).
41. Ocalewicz K, Sapota MR: Cytogenetic characteristics of the round goby Neogobius melanostomus (Pallas, 1814) (Teleostei: Gobiidae: Benthophilinae). Mar Biol Res 7: 195-201 (2011).
42. Pezold F: Evidence for multiple sex chromosomes in the freshwater goby, Gobionellus shufeldti (Pisces: Gobiidae). Copeia 1: 235-238 (1984).
43. Pinkel D, Straume T, Gray J: Cytogenetic analysis using quantitative high sensitivity fluorescence hybridization. Proc Natl Acad Sci USA 83: 2934-2938 (1986).
44. Raskina O, Belyayev A, Nevo E: Quantum speciation in Aegilops : molecular cytogenetic evidence from rDNA clusters variability in natural populations. Proc Natl Acad Sci USA 101: 14818-14823 (2004).
45. Raskina O, Barber JC, Nevo E, Belyayev A: Repetitive DNA and chromosomal rearrangements: speciation-related events in plant genomes. Cytogenet Genome Res 120: 351-357 (2008).
46. Rocha LA, Robertson DR, Rocha CR, Van Tassell JL, Craig MT, Bowen BW: Recent invasion of the tropical Atlantic by an Indo-Pacific coral reef fish. Mol Ecol 14: 3921-3928 (2005).
47. Ruber L, Vantassell JL, Zardoya R: Rapid speciation and ecological divergence in the American seven-spined gobies (Gobiidae, Gobiosomatini) inferred from a molecular phylogeny. Evolution 57: 1584-1598 (2003).
48. Rudd MK, Endicott RM, Friedman C, Walker M, Young JM, et al: Comparative sequence analysis of primate subtelomeres originating from a chromosome fission event. Genome Res 19: 33-41 (2009).
49. Sena DCS, Molina WF: Robertsonian rearrangements and pericentric inversions in Scaridae fish (Perciformes). Genet Mol Res 6: 575-580 (2007).
50. Sinque C, Muelbert JH: Ictioplancton, in Seeliger U, Odebrecht C, Castello JP (eds): Os Ecossistemas Costeiro e Marinho do Extremo Sul do Brasil, pp 56-60 (Editora Ecoscientia, Rio Grande 1998).
51. Sponaugle S, Cowen RK: Larval durations and recruitment patterns of two Caribbean gobies (Gobiidae): contrasting early life histories in demersal spawners. Mar Biol 120: 133-143 (1994).
52. Sumner AT: A simple technique for demonstrating centromeric heterochromatin. Exp Cell Res 75: 304-306 (1972).
53. Taylor MS, Hellberg ME: Genetic evidence for local retention of pelagic larvae in a Caribbean reef fish. Science 299: 107-109 (2003).
54. Taylor MS, Hellberg ME: Marine radiations at small geographic scales: speciation in neotropical reef gobies (Elacatinus). Evolution 59: 374-385 (2005).
55. Thacker CE: Population structure in two species of the reef goby Gnatholepis (Teleostei: Perciformes) among four South Pacific island groups. Coral Reefs 23: 357-366 (2004).
56. Thacker CE: Phylogeny of Gobiodei and placement within Acanthomorpha, with a new classification and investigation of diversification and character evolution. Copeia 1: 93-104 (2009).
57. Thode G, Alvarez MC: The chromosome complements of two species of Gobius (Teleostei, Perciformes). Experientia 39: 1312-1314 (1983).
58. Thode G, Giles V, Alvarez MC: Multiple chromosome polymorphism in Gobius paganellus (Teleostei, Perciformes). Heredity 54: 3-7 (1985).
59. Thode G, Martinez G, Ruiz JL, Lopez JR: A complex chromosomal polymorphism in Gobius fallax (Gobiidae, Perciformes). Genetica 76: 65-71 (1988).
60. Vasil'ev VP, Grigoryan KA: Karyology of the Gobiidae. J Ichthyol 33: 1-16 (1993).
61. Vasil'ev VP, Vasil'yeva ED: The new systematics of freshwater Caucasian gobies: three distinct species within former N. platyrostris constructor (Gobiidae), p 66. VIII Congr Soc Europ Ichthyol, Oviedo (1994).
62. Venner S, Feschotte C, Biemont C: Dynamics of transposable elements: towards a community ecology of the genome. Trends Genet 25: 317-323 (2009).
63. Zhang X, Eickbush MT, Eickbush TH: Role of recombination in the long-term retention of transposable elements in rRNA gene loci. Genetics 180: 1617-1626 (2008).