메뉴 건너뛰기




Volumn 180, Issue 3, 2008, Pages 1617-1626

Role of recombination in the long-term retention of transposable elements in rRNA gene loci

Author keywords

[No Author keywords available]

Indexed keywords

RIBOSOME DNA; RIBOSOME RNA;

EID: 59449095107     PISSN: 00166731     EISSN: 00166731     Source Type: Journal    
DOI: 10.1534/genetics.108.093716     Document Type: Article
Times cited : (42)

References (39)
  • 1
    • 33645113551 scopus 로고    scopus 로고
    • Monitoring the mode and tempo of concerted evolution in the Drosophila melanogaster rDNA locus
    • AVERBECK, K. T., and T. H. EICKBUSH, 2005 Monitoring the mode and tempo of concerted evolution in the Drosophila melanogaster rDNA locus. Genetics 171: 1837-1846.
    • (2005) Genetics , vol.171 , pp. 1837-1846
    • AVERBECK, K.T.1    EICKBUSH, T.H.2
  • 3
    • 0025876003 scopus 로고
    • Population genetics of the Y chromosome of Drosophila melanogaster: RDNA variation and phenotypic correlates
    • CLARK, A. G., F. M. SZUMSKI and E. M. LYCKEGAARD, 1990 Population genetics of the Y chromosome of Drosophila melanogaster: rDNA variation and phenotypic correlates. Genet. Res. 58: 7-13.
    • (1990) Genet. Res , vol.58 , pp. 7-13
    • CLARK, A.G.1    SZUMSKI, F.M.2    LYCKEGAARD, E.M.3
  • 4
    • 0038817792 scopus 로고    scopus 로고
    • Extrachromosomal circular DNA of tandemly repeated genomic sequences in Drosophila
    • COHEN, S., K. YACOBI and D. SEGAL, 2003 Extrachromosomal circular DNA of tandemly repeated genomic sequences in Drosophila. Genome Res. 13: 1133-1145.
    • (2003) Genome Res , vol.13 , pp. 1133-1145
    • COHEN, S.1    YACOBI, K.2    SEGAL, D.3
  • 5
    • 0024392359 scopus 로고
    • Two different chromatin structures coexist in ribosomal RNA genes throughout the cell cycle
    • CONCONI, A., R. M. WIDMER, T. KOLLER and J. M. SOGO, 1992a Two different chromatin structures coexist in ribosomal RNA genes throughout the cell cycle. Cell 57: 753-761.
    • (1992) Cell , vol.57 , pp. 753-761
    • CONCONI, A.1    WIDMER, R.M.2    KOLLER, T.3    SOGO, J.M.4
  • 6
    • 0026684670 scopus 로고
    • Ribosomal gene clusters are uniquely proportioned between open and closed chromatin structures in both tomato leaf cells and exponentially growing suspension cultures
    • CONCONI, A., J. M. SOGO and C. A. RYAN, 1992b Ribosomal gene clusters are uniquely proportioned between open and closed chromatin structures in both tomato leaf cells and exponentially growing suspension cultures. Proc. Natl. Acad. Sci. USA 89: 5256-5260.
    • (1992) Proc. Natl. Acad. Sci. USA , vol.89 , pp. 5256-5260
    • CONCONI, A.1    SOGO, J.M.2    RYAN, C.A.3
  • 7
    • 0029112540 scopus 로고
    • Transcription in the yeast rRNA gene locus: Distribution of the active gene copies and chromatin structure of their flanking regulatory sequences
    • DAMMANN, R., R. LUCCHINI, T. KOLLER and J. M. SOGO, 1995 Transcription in the yeast rRNA gene locus: distribution of the active gene copies and chromatin structure of their flanking regulatory sequences. Mol. Cell. Biol. 15: 5294-5303.
    • (1995) Mol. Cell. Biol , vol.15 , pp. 5294-5303
    • DAMMANN, R.1    LUCCHINI, R.2    KOLLER, T.3    SOGO, J.M.4
  • 8
    • 45849088092 scopus 로고    scopus 로고
    • The effects of recombination rate on the distribution and abundance of transposable elements
    • DOLGIN, E. S., and B. CHARLESWORTH, 2008 The effects of recombination rate on the distribution and abundance of transposable elements. Genetics 178: 2169-2177.
    • (2008) Genetics , vol.178 , pp. 2169-2177
    • DOLGIN, E.S.1    CHARLESWORTH, B.2
  • 9
    • 34247899003 scopus 로고    scopus 로고
    • Finely orchestrated movements: Evolution of the ribosomal RNA genes
    • EICKBUSH, T. H., and D. G. EICKBUSH, 2007 Finely orchestrated movements: evolution of the ribosomal RNA genes. Genetics 175: 477-485.
    • (2007) Genetics , vol.175 , pp. 477-485
    • EICKBUSH, T.H.1    EICKBUSH, D.G.2
  • 10
    • 0019209512 scopus 로고
    • Unequal crossing over at the rDNA tandon as a source of quantitative genetic variation in Drosophila
    • FRANKHAM, R., D. A. BRISCOE and R. K. NURTHEN, 1980 Unequal crossing over at the rDNA tandon as a source of quantitative genetic variation in Drosophila. Genetics 95: 727-742.
    • (1980) Genetics , vol.95 , pp. 727-742
    • FRANKHAM, R.1    BRISCOE, D.A.2    NURTHEN, R.K.3
  • 11
    • 33846880495 scopus 로고    scopus 로고
    • Highly efficient concerted evolution in the ribosomal DNA repeats: Total rDNA repeat variation revealed by whole-genome shotgun sequence data
    • GANLEY, A. R., and T. KOBAYASHI, 2007 Highly efficient concerted evolution in the ribosomal DNA repeats: total rDNA repeat variation revealed by whole-genome shotgun sequence data. Genome Res. 17: 184-191.
    • (2007) Genome Res , vol.17 , pp. 184-191
    • GANLEY, A.R.1    KOBAYASHI, T.2
  • 12
    • 0035141595 scopus 로고    scopus 로고
    • Multiple lineages of R1 retrotransposable elements can coexist in the rDNA loci of Drosophila
    • GENTILE, K. L., W. D. BURKE and T. H. EICKBUSH, 2001 Multiple lineages of R1 retrotransposable elements can coexist in the rDNA loci of Drosophila. Mol. Biol. Evol. 16: 235-245.
    • (2001) Mol. Biol. Evol , vol.16 , pp. 235-245
    • GENTILE, K.L.1    BURKE, W.D.2    EICKBUSH, T.H.3
  • 13
    • 0035338424 scopus 로고    scopus 로고
    • Human rDNA: Evolutionary patterns within genes and tandem arrays derived from multiple chromosomes
    • GONZALEZ, I. L., and J. E. SYLVESTER, 2001 Human rDNA: evolutionary patterns within genes and tandem arrays derived from multiple chromosomes. Genomics 73: 255-263.
    • (2001) Genomics , vol.73 , pp. 255-263
    • GONZALEZ, I.L.1    SYLVESTER, J.E.2
  • 14
    • 0024821371 scopus 로고
    • Recombinational controls of rDNA redundancy in Drosophila
    • HAWLEY, R. S., and C. H. MARCUS, 1989 Recombinational controls of rDNA redundancy in Drosophila. Annu. Rev. Genet. 23: 87-120.
    • (1989) Annu. Rev. Genet , vol.23 , pp. 87-120
    • HAWLEY, R.S.1    MARCUS, C.H.2
  • 15
    • 0026322842 scopus 로고
    • Retrotransposable elements R1 and R2 interrupt the rDNA genes of most insects
    • JAKUBCZAK, J., W. D. BURKE and T. H. EICKBUSH, 1991 Retrotransposable elements R1 and R2 interrupt the rDNA genes of most insects. Proc. Natl. Acad. Sci. USA 88: 3295-3299.
    • (1991) Proc. Natl. Acad. Sci. USA , vol.88 , pp. 3295-3299
    • JAKUBCZAK, J.1    BURKE, W.D.2    EICKBUSH, T.H.3
  • 16
    • 0026729098 scopus 로고
    • Turnover of R1 (type I) and R2 (type II) retrotransposable elements in the ribosomal DNA of Drosophila melanogaster
    • JAKUBCZAK, J., M. ZENNI, R. WOODRUFF and T. H. EICKBUSH, 1992 Turnover of R1 (type I) and R2 (type II) retrotransposable elements in the ribosomal DNA of Drosophila melanogaster. Genetics 131: 129-142.
    • (1992) Genetics , vol.131 , pp. 129-142
    • JAKUBCZAK, J.1    ZENNI, M.2    WOODRUFF, R.3    EICKBUSH, T.H.4
  • 17
    • 26444555977 scopus 로고    scopus 로고
    • Long-term inheritance of the 28S rDNA-specific retrotransposon R2
    • KOJIMA, K. K., and H. FUJIWARA, 2005 Long-term inheritance of the 28S rDNA-specific retrotransposon R2. Mol. Biol. Evol. 22: 2157-2165.
    • (2005) Mol. Biol. Evol , vol.22 , pp. 2157-2165
    • KOJIMA, K.K.1    FUJIWARA, H.2
  • 19
    • 0025810005 scopus 로고
    • Evolution of ribosomal RNA gene copy number on the sex chromosomes of Drosophila melanogaster
    • LYCKEGAARD, E. M., and A. G. CLARK, 1991 Evolution of ribosomal RNA gene copy number on the sex chromosomes of Drosophila melanogaster. Mol. Biol. Evol. 8: 458-474.
    • (1991) Mol. Biol. Evol , vol.8 , pp. 458-474
    • LYCKEGAARD, E.M.1    CLARK, A.G.2
  • 20
    • 0032976398 scopus 로고    scopus 로고
    • The age and evolution of non-LTR retrotransposable elements
    • MALIK, H. S., W. D. BURKE and T. H. EICKBUSH, 1999 The age and evolution of non-LTR retrotransposable elements. Mol. Biol. Evol. 16: 793-805.
    • (1999) Mol. Biol. Evol , vol.16 , pp. 793-805
    • MALIK, H.S.1    BURKE, W.D.2    EICKBUSH, T.H.3
  • 21
    • 0026761011 scopus 로고
    • Evidence that intergenic spacer repeats of Drosophila melanogaster rRNA genes function as X-Y pairing sites in male meiosis, and a general model for achiasmatic pairing
    • MCKEE, B. D., L. HABERA and J. A. VRANA, 1992 Evidence that intergenic spacer repeats of Drosophila melanogaster rRNA genes function as X-Y pairing sites in male meiosis, and a general model for achiasmatic pairing. Genetics 132: 529-544.
    • (1992) Genetics , vol.132 , pp. 529-544
    • MCKEE, B.D.1    HABERA, L.2    VRANA, J.A.3
  • 22
    • 33846541821 scopus 로고    scopus 로고
    • Rates of recombination in the ribosomal DNA of apomictically propagated Daphnia obtusa lines
    • MCTAGGART, S. J., J. L. DUDYCHA, A. OMILIAN and T. J. CREASE, 2007 Rates of recombination in the ribosomal DNA of apomictically propagated Daphnia obtusa lines. Genetics 175: 311-320.
    • (2007) Genetics , vol.175 , pp. 311-320
    • MCTAGGART, S.J.1    DUDYCHA, J.L.2    OMILIAN, A.3    CREASE, T.J.4
  • 23
    • 0346840489 scopus 로고
    • Evolution of multigene families under interchromosomal gene conversion
    • NAGYLAKI, T., 1984 Evolution of multigene families under interchromosomal gene conversion. Proc. Natl. Acad. Sci. USA 81: 3796-3800.
    • (1984) Proc. Natl. Acad. Sci. USA , vol.81 , pp. 3796-3800
    • NAGYLAKI, T.1
  • 25
    • 0020790321 scopus 로고
    • Population genetics of multigene families that are dispersed into two or more chromosomes
    • OHTA, T., and G. DOVER, 1983 Population genetics of multigene families that are dispersed into two or more chromosomes. Proc. Natl. Acad. Sci. USA 80: 4079-4083.
    • (1983) Proc. Natl. Acad. Sci. USA , vol.80 , pp. 4079-4083
    • OHTA, T.1    DOVER, G.2
  • 26
    • 0034856981 scopus 로고    scopus 로고
    • Dynamics of R1 and R2 elements in the rDNA locus of Drosophila simulans
    • PEREZ-GONZALEZ, C. E., and T. H. EICKBUSH, 2001 Dynamics of R1 and R2 elements in the rDNA locus of Drosophila simulans. Genetics 158: 1557-1567.
    • (2001) Genetics , vol.158 , pp. 1557-1567
    • PEREZ-GONZALEZ, C.E.1    EICKBUSH, T.H.2
  • 27
    • 0036811729 scopus 로고    scopus 로고
    • Rates of R1 and R2 retrotransposition and elimination from the rDNA locus of Drosophila melanogaster
    • PEREZ-GONZALEZ, C. E., and T. H. EICKBUSH, 2002 Rates of R1 and R2 retrotransposition and elimination from the rDNA locus of Drosophila melanogaster. Genetics 162: 799-811.
    • (2002) Genetics , vol.162 , pp. 799-811
    • PEREZ-GONZALEZ, C.E.1    EICKBUSH, T.H.2
  • 28
    • 0018864969 scopus 로고
    • Unequal meiotic recombination within tandem arrays of yeast ribosomal DNA genes
    • PETES, T. D., 1980 Unequal meiotic recombination within tandem arrays of yeast ribosomal DNA genes. Cell 19: 765-774.
    • (1980) Cell , vol.19 , pp. 765-774
    • PETES, T.D.1
  • 29
    • 17144392601 scopus 로고    scopus 로고
    • Evolution of the chromosomal location of rDNA genes in two Drosophila species subgroups: Ananassae and melanogaster
    • ROY, V., L. MONTI-DEDIEU, N. CHAMINADE, S. SILJAK-YAKOVLEV, S. AULARD et al., 2005 Evolution of the chromosomal location of rDNA genes in two Drosophila species subgroups: ananassae and melanogaster. Heredity 94: 388-395.
    • (2005) Heredity , vol.94 , pp. 388-395
    • ROY, V.1    MONTI-DEDIEU, L.2    CHAMINADE, N.3    SILJAK-YAKOVLEV, S.4    AULARD, S.5
  • 30
    • 0028500562 scopus 로고
    • Chromosomal homogeneity of Drosophila ribosomal DNA arrays suggests intrachromosomal exchange drives concerted evolution
    • SCHLOTTERER, C., and D. TAUTZ, 1994 Chromosomal homogeneity of Drosophila ribosomal DNA arrays suggests intrachromosomal exchange drives concerted evolution. Curr. Biol. 4: 777-783.
    • (1994) Curr. Biol , vol.4 , pp. 777-783
    • SCHLOTTERER, C.1    TAUTZ, D.2
  • 31
    • 0023812871 scopus 로고
    • Linkage disequilibrium in human ribosomal genes: Implications from multigene family evolution
    • SEPERACK, P., M. SLATKIN and N. ARNHEIM, 1988 Linkage disequilibrium in human ribosomal genes: implications from multigene family evolution. Genetics 119: 943-949.
    • (1988) Genetics , vol.119 , pp. 943-949
    • SEPERACK, P.1    SLATKIN, M.2    ARNHEIM, N.3
  • 32
    • 38849095337 scopus 로고    scopus 로고
    • Sequence variation within the rRNA gene loci of 12 Drosophila species
    • STAGE, D. E., and T. H. EICKBUSH, 2007 Sequence variation within the rRNA gene loci of 12 Drosophila species. Genome Res. 17: 1888-1897.
    • (2007) Genome Res , vol.17 , pp. 1888-1897
    • STAGE, D.E.1    EICKBUSH, T.H.2
  • 33
    • 0024538748 scopus 로고
    • Tandem-repetitive noncoding DNA: Forms and forces
    • STEPHAN, W., 1989 Tandem-repetitive noncoding DNA: forms and forces. Mol. Biol. Evol. 6: 198-212.
    • (1989) Mol. Biol. Evol , vol.6 , pp. 198-212
    • STEPHAN, W.1
  • 34
    • 0023297258 scopus 로고
    • Persistence of tandem arrays: Implications for satellite and simple-sequence DNAs
    • WALSH, J. B., 1987 Persistence of tandem arrays: implications for satellite and simple-sequence DNAs. Genetics 115: 553-567.
    • (1987) Genetics , vol.115 , pp. 553-567
    • WALSH, J.B.1
  • 35
    • 0023178676 scopus 로고
    • Evolution of the ribosomal DNA spacers of Drosophila melanogaster: Different patterns of variation on the X and Y chromosomes
    • WILLIAMS, S. M., G. R. FURNIER, E. FUOG and C. STROBECK, 1987 Evolution of the ribosomal DNA spacers of Drosophila melanogaster: different patterns of variation on the X and Y chromosomes. Genetics 116: 225-232.
    • (1987) Genetics , vol.116 , pp. 225-232
    • WILLIAMS, S.M.1    FURNIER, G.R.2    FUOG, E.3    STROBECK, C.4
  • 36
    • 0024692112 scopus 로고
    • Reciprocal recombination and the evolution of the ribosomal gene family of Drosophila melanogaster
    • WILLIAMS, S. M., J. A. KENNISON, L. G. ROBBINS and C. STROBECK, 1989 Reciprocal recombination and the evolution of the ribosomal gene family of Drosophila melanogaster. Genetics 122: 617-624.
    • (1989) Genetics , vol.122 , pp. 617-624
    • WILLIAMS, S.M.1    KENNISON, J.A.2    ROBBINS, L.G.3    STROBECK, C.4
  • 37
    • 33845230586 scopus 로고    scopus 로고
    • Chromatin structure and transcription of the R1- and R2-inserted rRNA genes of Drosophila melanogaster
    • YE, J., and T. H. EICKBUSH, 2006 Chromatin structure and transcription of the R1- and R2-inserted rRNA genes of Drosophila melanogaster. Mol. Cell. Biol. 26: 8781-8790.
    • (2006) Mol. Cell. Biol , vol.26 , pp. 8781-8790
    • YE, J.1    EICKBUSH, T.H.2
  • 38
    • 20444410099 scopus 로고    scopus 로고
    • Characterization of active R2 retrotransposition in the rDNA locus of Drosophila simulans
    • ZHANG, X., and T. H. EICKBUSH, 2005 Characterization of active R2 retrotransposition in the rDNA locus of Drosophila simulans. Genetics 170: 195-205.
    • (2005) Genetics , vol.170 , pp. 195-205
    • ZHANG, X.1    EICKBUSH, T.H.2
  • 39
    • 38349165930 scopus 로고    scopus 로고
    • Rapid R2 retrotransposition leads to the loss of previously inserted copies via large deletions of the rDNA locus
    • ZHANG, X., J. ZHOU and T. H. EICKBUSH, 2008 Rapid R2 retrotransposition leads to the loss of previously inserted copies via large deletions of the rDNA locus. Mol. Biol. Evol. 25: 229-237.
    • (2008) Mol. Biol. Evol , vol.25 , pp. 229-237
    • ZHANG, X.1    ZHOU, J.2    EICKBUSH, T.H.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.