A comparative study of class 1 integrons in Acinetobacter baumannii

Gene

Volumn 544, Issue 1, 2014, Pages 75-82

  Liu, Chih Chin ^a,b   Tang, Chuan Yi ^b,c   Chang, Kai Chih ^d,e   Kuo, Han Yueh ^f,g   Liou, Ming Li ^b,h  

^a CHUNG HUA UNIVERSITY   (Taiwan)

^b PROVIDENCE UNIVERSITY   (Taiwan)

^c NATIONAL TSING HUA UNIVERSITY   (Taiwan)

^d TZU CHI UNIVERSITY   (Taiwan)

^e Department of Laboratory Medicine Buddhst Tzu Chi General Hospital   (Taiwan)

^f NATIONAL TAIWAN UNIVERSITY HOSPITAL   (Taiwan)

^g NATIONAL TAIWAN UNIVERSITY   (Taiwan)

^h YUANPEI UNIVERSITY   (Taiwan)

Author keywords

AbaRs; Acinetobacter baumannii; DNA; HGT; Integrase; Integron; IntI; IS; MDR

Indexed keywords

AMINOGLYCOSIDE; ANTIBIOTIC AGENT; ANTIINFECTIVE AGENT; CHLORAMPHENICOL; INTEGRASE; QUATERNARY AMMONIUM DERIVATIVE;

ACINETOBACTER BAUMANNII; ANTIBIOTIC RESISTANCE; ARTICLE; BACTERIAL GENOME; BACTERIAL STRAIN; COMPARATIVE STUDY; INTEGRON; MICROORGANISM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; SEDIMENT;

ACINETOBACTER BAUMANNII;

ACINETOBACTER BAUMANNII; INTEGRASE; INTEGRON;

ACINETOBACTER BAUMANNII; AMINO ACID SEQUENCE; ANTI-BACTERIAL AGENTS; BACTERIA; BACTERIAL PROTEINS; DNA, BACTERIAL; DRUG RESISTANCE, MULTIPLE, BACTERIAL; EVOLUTION, MOLECULAR; GENE TRANSFER, HORIZONTAL; GENOME, BACTERIAL; GENOMICS; INTEGRASES; INTEGRONS; MOLECULAR SEQUENCE DATA; PHYLOGENY; SEQUENCE HOMOLOGY, AMINO ACID; SOIL MICROBIOLOGY;

EID: 84899973237     PISSN: 03781119     EISSN: 18790038     Source Type: Journal    
DOI: 10.1016/j.gene.2014.04.047     Document Type: Article

References (35)

1. Afzal-Shah M., Woodford N., Livermore D.M. Characterization of OXA-25, OXA-26, and OXA-27, molecular class D beta-lactamases associated with carbapenem resistance in clinical isolates of Acinetobacter baumannii. Antimicrobial Agents and Chemotherapy 2001, 45:583-588.
2. Altschul S.F., Gish W., Miller W., Myers E.W., Lipman D.J. Basic local alignment search tool. Journal of Molecular Biology 1990, 215:403-410.
3. Bonnin R.A., Poirel L., Nordmann P. AbaR-type transposon structures in Acinetobacter baumannii. Journal of Antimicrobial Chemotherapy 2012, 67:234-236.
4. Bou G., Martinez-Beltran J. Cloning, nucleotide sequencing, and analysis of the gene encoding an AmpC beta-lactamase in Acinetobacter baumannii. Antimicrobial Agents and Chemotherapy 2000, 44:428-432.
5. Boucher Y., Labbate M., Koenig J.E., Stokes H.W. Integrons: mobilizable platforms that promote genetic diversity in bacteria. Trends in Microbiology 2007, 15:301-309.
6. Cambray G., Guerout A.M., Mazel D. Integrons. Annual Review of Genetics 2010, 44:141-166.
7. Castanheira M., Toleman M.A., Jones R.N., Schmidt F.J., Walsh T.R. Molecular characterization of a beta-lactamase gene, blaGIM-1, encoding a new subclass of metallo-beta-lactamase. Antimicrobial Agents and Chemotherapy 2004, 48:4654-4661.
8. Fournier P.E., Vallenet D., Barbe V., Audic S., Ogata H., Poirel L., Richet H., Robert C., Mangenot S., Abergel C., Nordmann P., Weissenbach J., Raoult D., Claverie J.M. Comparative genomics of multidrug resistance in Acinetobacter baumannii. PLoS Genetics 2006, 2:e7.
9. Hall R.M., Collis C.M. Mobile gene cassettes and integrons: capture and spread of genes by site-specific recombination. Molecular Microbiology 1995, 15:593-600.
10. Harding C.M., Tracy E.N., Carruthers M.D., Rather P.N., Actis L.A., Munson R.S. Acinetobacter baumannii strain M2 produces type IV pili which play a role in natural transformation and twitching motility but not surface-associated motility. MBio 2013, 4.
11. Kempf M., Rolain J.M. Emergence of resistance to carbapenems in Acinetobacter baumannii in Europe: clinical impact and therapeutic options. International Journal of Antimicrobial Agents 2012, 39:105-114.
12. Krizova L., Dijkshoorn L., Nemec A. Diversity and evolution of AbaR genomic resistance islands in Acinetobacter baumannii strains of European clone I. Antimicrobial Agents and Chemotherapy 2011, 55:3201-3206.
13. Lee K., Yum J.H., Yong D., Lee H.M., Kim H.D., Docquier J.D., Rossolini G.M., Chong Y. Novel acquired metallo-beta-lactamase gene, bla(SIM-1), in a class 1 integron from Acinetobacter baumannii clinical isolates from Korea. Antimicrobial Agents and Chemotherapy 2005, 49:4485-4491.
14. Lee Y.T., Huang L.Y., Chen T.L., Siu L.K., Fung C.P., Cho W.L., Yu K.W., Liu C.Y. Gene cassette arrays, antibiotic susceptibilities, and clinical characteristics of Acinetobacter baumannii bacteremic strains harboring class 1 integrons. Journal of Microbiology, Immunology, and Infection 2009, 42:210-219.
15. Lin M.F., Chang K.C., Yang C.Y., Yang C.M., Xiao C.C., Kuo H.Y., Liou M.L. Role of integrons in antimicrobial susceptibility patterns of Acinetobacter baumannii. Japanese Journal of Infectious Diseases 2010, 63:440-443.
16. Liu C.C., Tang C.Y., Kuo H.Y., Lu C.W., Chang K.C., Liou M.L. The origin of Acinetobacter baumannii TYTH-1: a comparative genomics study. International Journal of Antimicrobial Agents 2013, 41:318-324.
17. Lorenz M.G., Wackernagel W. Bacterial gene transfer by natural genetic transformation in the environment. Microbiological Reviews 1994, 58:563-602.
18. Mazel D. Integrons: agents of bacterial evolution. Nature Reviews. Microbiology 2006, 4:608-620.
19. Metzgar D., Bacher J.M., Pezo V., Reader J., Doring V., Schimmel P., Marliere P., de Crecy-Lagard V. Acinetobacter sp. ADP1: an ideal model organism for genetic analysis and genome engineering. Nucleic Acids Research 2004, 32:5780-5790.
20. Nemec A., Krizova L., Maixnerova M., Diancourt L., van der Reijden T.J., Brisse S., van den Broek P., Dijkshoorn L. Emergence of carbapenem resistance in Acinetobacter baumannii in the Czech Republic is associated with the spread of multidrug-resistant strains of European clone II. Journal of Antimicrobial Chemotherapy 2008, 62:484-489.
21. Partridge S.R., Tsafnat G., Coiera E., Iredell J.R. Gene cassettes and cassette arrays in mobile resistance integrons. FEMS Microbiology Reviews 2009, 33:757-784.
22. Peleg A.Y., Seifert H., Paterson D.L. Acinetobacter baumannii: emergence of a successful pathogen. Clinical Microbiology Reviews 2008, 21:538-582.
23. Perez F., Hujer A.M., Hujer K.M., Decker B.K., Rather P.N., Bonomo R.A. Global challenge of multidrug-resistant Acinetobacter baumannii. Antimicrobial Agents and Chemotherapy 2007, 51:3471-3484.
24. Post V., White P.A., Hall R.M. Evolution of AbaR-type genomic resistance islands in multiply antibiotic-resistant Acinetobacter baumannii. Journal of Antimicrobial Chemotherapy 2010, 65:1162-1170.
25. Ramirez M.S., Don M., Merkier A.K., Bistue A.J., Zorreguieta A., Centron D., Tolmasky M.E. Naturally competent Acinetobacter baumannii clinical isolate as a convenient model for genetic studies. Journal of Clinical Microbiology 2010, 48:1488-1490.
26. Seputiene V., Povilonis J., Suziedeliene E. Novel variants of AbaR resistance islands with a common backbone in Acinetobacter baumannii isolates of European clone II. Antimicrobial Agents and Chemotherapy 2012, 56:1969-1973.
27. Stokes H.W., Hall R.M. A novel family of potentially mobile DNA elements encoding site-specific gene-integration functions: integrons. Molecular Microbiology 1989, 3:1669-1683.
28. Stokes H.W., Nesbo C.L., Holley M., Bahl M.I., Gillings M.R., Boucher Y. Class 1 integrons potentially predating the association with tn402-like transposition genes are present in a sediment microbial community. Journal of Bacteriology 2006, 188:5722-5730.
29. Tamura K., Peterson D., Peterson N., Stecher G., Nei M., Kumar S. MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Molecular Biology and Evolution 2011, 28:2731-2739.
30. Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., Higgins D.G. The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Research 1997, 25:4876-4882.
31. Valenzuela J.K., Thomas L., Partridge S.R., van der Reijden T., Dijkshoorn L., Iredell J. Horizontal gene transfer in a polyclonal outbreak of carbapenem-resistant Acinetobacter baumannii. Journal of Clinical Microbiology 2007, 45:453-460.
32. Vila J., Marti S., Sanchez-Cespedes J. Porins, efflux pumps and multidrug resistance in Acinetobacter baumannii. Journal of Antimicrobial Chemotherapy 2007, 59:1210-1215.
33. Wilharm G., Piesker J., Laue M., Skiebe E. DNA uptake by the nosocomial pathogen Acinetobacter baumannii occurs during movement along wet surfaces. Journal of Bacteriology 2013, 195:4146-4153.
34. Xu Z., Hao B. CVTree update: a newly designed phylogenetic study platform using composition vectors and whole genomes. Nucleic Acids Research 2009, 37:W174-W178.
35. Yamamoto M., Nagao M., Matsumura Y., Matsushima A., Ito Y., Takakura S., Ichiyama S. Interspecies dissemination of a novel class 1 integron carrying blaIMP-19 among Acinetobacter species in Japan. Journal of Antimicrobial Chemotherapy 2011, 66:2480-2483.