-
1
-
-
84857067069
-
Intraspecies biodiversity of the genetically homologous species Brucella microti
-
Al-Dahouk S, Hofer E, Tomaso H, Vergnaud G, Le Fleche P, Cloeckaert A, Koylass MS, Whatmore AM, Nockler K & Scholz HC (2012) Intraspecies biodiversity of the genetically homologous species Brucella microti. Appl Environ Microbiol 78: 1534-1543.
-
(2012)
Appl Environ Microbiol
, vol.78
, pp. 1534-1543
-
-
Al-Dahouk, S.1
Hofer, E.2
Tomaso, H.3
Vergnaud, G.4
Le Fleche, P.5
Cloeckaert, A.6
Koylass, M.S.7
Whatmore, A.M.8
Nockler, K.9
Scholz, H.C.10
-
2
-
-
45449094769
-
Genetic and phenotypic evidence for Streptomyces griseus ecovars isolated from a beach and dune sand system
-
Antony-Babu S, Stach JEM & Goodfellow M (2008) Genetic and phenotypic evidence for Streptomyces griseus ecovars isolated from a beach and dune sand system. Antonie Van Leeuwenhoek 94: 63-74.
-
(2008)
Antonie Van Leeuwenhoek
, vol.94
, pp. 63-74
-
-
Antony-Babu, S.1
Stach, J.E.M.2
Goodfellow, M.3
-
3
-
-
0037224865
-
Elevated abundance of bacteriophage infecting bacteria in soil
-
Ashelford KE, Day MJ & Fry JC (2003) Elevated abundance of bacteriophage infecting bacteria in soil. Appl Environ Microbiol 69: 285-289.
-
(2003)
Appl Environ Microbiol
, vol.69
, pp. 285-289
-
-
Ashelford, K.E.1
Day, M.J.2
Fry, J.C.3
-
5
-
-
0030302293
-
Total carbon and nitrogen in soils of the world
-
Batjes NH (1996) Total carbon and nitrogen in soils of the world. Eur J Soil Sci 47: 151-163.
-
(1996)
Eur J Soil Sci
, vol.47
, pp. 151-163
-
-
Batjes, N.H.1
-
7
-
-
0037046560
-
Complete genome sequence of the model actinomycete Streptomyces coelicolor A32
-
Bentley SD, Chater KF, Cerdeno-Tarraga AM et al. (2002) Complete genome sequence of the model actinomycete Streptomyces coelicolor A32. Nature 417: 141-147.
-
(2002)
Nature
, vol.417
, pp. 141-147
-
-
Bentley, S.D.1
Chater, K.F.2
Cerdeno-Tarraga, A.M.3
-
8
-
-
84859574738
-
Antibiotic resistance is prevalent in an isolated cave microbiome
-
Bhullar K, Waglechner N, Pawzrlowski A, Koteva K, Banks ED, Johnston MD, Barton HA & Wright GD (2012) Antibiotic resistance is prevalent in an isolated cave microbiome. PLoS ONE 7: e34953.
-
(2012)
PLoS ONE
, vol.7
-
-
Bhullar, K.1
Waglechner, N.2
Pawzrlowski, A.3
Koteva, K.4
Banks, E.D.5
Johnston, M.D.6
Barton, H.A.7
Wright, G.D.8
-
9
-
-
34247371700
-
Niche occupation limits adaptive radiation in experimental microcosms
-
DOI: 10.1371/journal.pone.0000193.
-
Brockhurst MA, Colegrave N, Hodgson DJ & Buckling A (2007) Niche occupation limits adaptive radiation in experimental microcosms. PLoS ONE 2: e193. DOI: 10.1371/journal.pone.0000193.
-
(2007)
PLoS ONE
, vol.2
-
-
Brockhurst, M.A.1
Colegrave, N.2
Hodgson, D.J.3
Buckling, A.4
-
10
-
-
0345492332
-
Synergy and contingency as driving forces for the evolution of multiple secondary metabolite production by Streptomyces species
-
Challis GL & Hopwood DA (2003) Synergy and contingency as driving forces for the evolution of multiple secondary metabolite production by Streptomyces species. P Natl Acad Sci USA 100(suppl 2): 14555-14561.
-
(2003)
P Natl Acad Sci USA
, vol.100
, Issue.SUPPL. 2
, pp. 14555-14561
-
-
Challis, G.L.1
Hopwood, D.A.2
-
11
-
-
0034467820
-
Biogeography and degree of endemnicity of fluorescent Pseudomonas strains in soil
-
Cho JC & Tiedje JM (2000) Biogeography and degree of endemnicity of fluorescent Pseudomonas strains in soil. Appl Environ Microbiol 66: 5448-5456.
-
(2000)
Appl Environ Microbiol
, vol.66
, pp. 5448-5456
-
-
Cho, J.C.1
Tiedje, J.M.2
-
12
-
-
0035065678
-
Grassland management and conversion into grassland: effects on soil carbon
-
Conant RT, Paustian K & Elliott ET (2001) Grassland management and conversion into grassland: effects on soil carbon. Ecol Appl 11: 343-355.
-
(2001)
Ecol Appl
, vol.11
, pp. 343-355
-
-
Conant, R.T.1
Paustian, K.2
Elliott, E.T.3
-
13
-
-
0041529651
-
Divergent evolution during an experimental adaptive radiation
-
Craig MacLean R & Bell G (2003) Divergent evolution during an experimental adaptive radiation. Proc R Soc Lond B 270: 1645-1650.
-
(2003)
Proc R Soc Lond B
, vol.270
, pp. 1645-1650
-
-
Craig MacLean, R.1
Bell, G.2
-
14
-
-
0037154213
-
Chemical warfare between microbes promotes biodiversity
-
Czárán TL, Hoekstra RF & Pagle L (2002) Chemical warfare between microbes promotes biodiversity. P Natl Acad Sci USA 992: 786-790.
-
(2002)
P Natl Acad Sci USA
, vol.992
, pp. 786-790
-
-
Czárán, T.L.1
Hoekstra, R.F.2
Pagle, L.3
-
15
-
-
2342581419
-
Spatial variation in the frequency and intensity of antibiotic interactions among streptomycetes from prairie soil
-
Davelos AL, Kinkel LL & Samac DA (2004a) Spatial variation in the frequency and intensity of antibiotic interactions among streptomycetes from prairie soil. Appl Environ Microbiol 70: 1051-1058.
-
(2004)
Appl Environ Microbiol
, vol.70
, pp. 1051-1058
-
-
Davelos, A.L.1
Kinkel, L.L.2
Samac, D.A.3
-
16
-
-
2342548750
-
Genetic and phenotypic traits of streptomycetes used to characterize antibiotic activities of field-collected microbes
-
Davelos AL, Xiao K, Flor JM & Kinkel LL (2004b) Genetic and phenotypic traits of streptomycetes used to characterize antibiotic activities of field-collected microbes. Can J Microbiol 50: 79-89.
-
(2004)
Can J Microbiol
, vol.50
, pp. 79-89
-
-
Davelos, A.L.1
Xiao, K.2
Flor, J.M.3
Kinkel, L.L.4
-
17
-
-
14944366980
-
Spatial variation in Streptomyces genetic composition and diversity in a prairie soil
-
Davelos AL, Xiao K, Samac DA, Martin AP & Kinkel LL (2004c) Spatial variation in Streptomyces genetic composition and diversity in a prairie soil. Microb Ecol 48: 601-612.
-
(2004)
Microb Ecol
, vol.48
, pp. 601-612
-
-
Davelos, A.L.1
Xiao, K.2
Samac, D.A.3
Martin, A.P.4
Kinkel, L.L.5
-
19
-
-
35748929920
-
Expanding the soil antibiotic resistome: exploring environmental diversity
-
D'Costa VM, Griffiths E & Wright GD (2007) Expanding the soil antibiotic resistome: exploring environmental diversity. Curr Opin Microbiol 10: 481-489.
-
(2007)
Curr Opin Microbiol
, vol.10
, pp. 481-489
-
-
D'Costa, V.M.1
Griffiths, E.2
Wright, G.D.3
-
20
-
-
0031736834
-
Transfer of streptomycin biosynthesis gene clusters within streptomycetes isolated from soil
-
Egan S, Wiener P, Kallifidas D & Wellington EMH (1998) Transfer of streptomycin biosynthesis gene clusters within streptomycetes isolated from soil. Appl Environ Microbiol 64: 5061-5063.
-
(1998)
Appl Environ Microbiol
, vol.64
, pp. 5061-5063
-
-
Egan, S.1
Wiener, P.2
Kallifidas, D.3
Wellington, E.M.H.4
-
21
-
-
31444447130
-
The diversity and biogeography of soil bacterial communities
-
Fierer N & Jackson RB (2006) The diversity and biogeography of soil bacterial communities. P Natl Acad Sci USA 103: 626-631.
-
(2006)
P Natl Acad Sci USA
, vol.103
, pp. 626-631
-
-
Fierer, N.1
Jackson, R.B.2
-
22
-
-
33947236971
-
Toward and ecological classification of soil bacteria
-
Fierer N, Bradford MA & Jackson RB (2007) Toward and ecological classification of soil bacteria. Ecology 88: 1354-1364.
-
(2007)
Ecology
, vol.88
, pp. 1354-1364
-
-
Fierer, N.1
Bradford, M.A.2
Jackson, R.B.3
-
23
-
-
4744340843
-
Microbial diversity in soil: selection of microbial populations by plant and soil type and implications for disease suppressiveness
-
Garbeva P, Van Veen JA & Van Elsas JD (2004) Microbial diversity in soil: selection of microbial populations by plant and soil type and implications for disease suppressiveness. Annu Rev Phytopathol 42: 243-270.
-
(2004)
Annu Rev Phytopathol
, vol.42
, pp. 243-270
-
-
Garbeva, P.1
Van Veen, J.A.2
Van Elsas, J.D.3
-
24
-
-
37749023761
-
Rhizosphere microbial community and its response to plant species and soil history
-
Garbeva P, Van Elsas JD & Van Venn JA (2008) Rhizosphere microbial community and its response to plant species and soil history. Plant Soil 302: 19-32.
-
(2008)
Plant Soil
, vol.302
, pp. 19-32
-
-
Garbeva, P.1
Van Elsas, J.D.2
Van Venn, J.A.3
-
25
-
-
44449118067
-
Microbial biogeography: from taxonomy to traits
-
Green JL, Bohannan BJM & Whitaker RJ (2008) Microbial biogeography: from taxonomy to traits. Science 320: 1039-1043.
-
(2008)
Science
, vol.320
, pp. 1039-1043
-
-
Green, J.L.1
Bohannan, B.J.M.2
Whitaker, R.J.3
-
26
-
-
79958013695
-
The bacterial biogeography of British soils
-
Griffiths RI, Thomson BC, James P, Bell T, Bailey M & Whiteley AS (2011) The bacterial biogeography of British soils. Environ Microbiol 13: 1642-1654.
-
(2011)
Environ Microbiol
, vol.13
, pp. 1642-1654
-
-
Griffiths, R.I.1
Thomson, B.C.2
James, P.3
Bell, T.4
Bailey, M.5
Whiteley, A.S.6
-
29
-
-
80051753308
-
A coevolutionary framework for managing disease-suppressive soils
-
Kinkel LL, Bakker MG & Schlatter DC (2011) A coevolutionary framework for managing disease-suppressive soils. Annu Rev Phytopathol 49: 47-67.
-
(2011)
Annu Rev Phytopathol
, vol.49
, pp. 47-67
-
-
Kinkel, L.L.1
Bakker, M.G.2
Schlatter, D.C.3
-
30
-
-
84867632846
-
Streptomyces competition and co-evolution in relation to plant disease suppression
-
Kinkel LL, Schlatter DC, Bakker MG & Arenz BE (2012) Streptomyces competition and co-evolution in relation to plant disease suppression. Res Microbiol 163: 490-499.
-
(2012)
Res Microbiol
, vol.163
, pp. 490-499
-
-
Kinkel, L.L.1
Schlatter, D.C.2
Bakker, M.G.3
Arenz, B.E.4
-
31
-
-
84893008218
-
Sympatric inhibition and niche differentiation suggest alternative coevolutionary trajectories among Streptomyces
-
Kinkel LL, Schlatter DC, Xiao K & Baines AD. (2014) Sympatric inhibition and niche differentiation suggest alternative coevolutionary trajectories among Streptomyces. ISME J 8: 249-256.
-
(2014)
ISME J
, vol.8
, pp. 249-256
-
-
Kinkel, L.L.1
Schlatter, D.C.2
Xiao, K.3
Baines, A.D.4
-
32
-
-
79959619241
-
Species sorting and neutral processes are both important during the initial assembly of bacterial communities
-
Langenheder S & Székely AJ (2011) Species sorting and neutral processes are both important during the initial assembly of bacterial communities. ISME J 5: 1086-1094.
-
(2011)
ISME J
, vol.5
, pp. 1086-1094
-
-
Langenheder, S.1
Székely, A.J.2
-
33
-
-
67651247607
-
Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale
-
Lauber C, Hamady M, Knight R & Fierer N (2009) Pyrosequencing-based assessment of soil pH as a predictor of soil bacterial community structure at the continental scale. Appl Environ Microbiol 75: 5111-5120.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 5111-5120
-
-
Lauber, C.1
Hamady, M.2
Knight, R.3
Fierer, N.4
-
34
-
-
60149112065
-
Functional role of bacterial multidrug efflux pumps in microbial natural ecosystems
-
Martinez JL, Sanchez MB, Martinez-Solano L, Hernandez A, Garmendia L, Farjardo A & Alvarez-Ortega C (2009) Functional role of bacterial multidrug efflux pumps in microbial natural ecosystems. FEMS Microbiol Rev 33: 430-449.
-
(2009)
FEMS Microbiol Rev
, vol.33
, pp. 430-449
-
-
Martinez, J.L.1
Sanchez, M.B.2
Martinez-Solano, L.3
Hernandez, A.4
Garmendia, L.5
Farjardo, A.6
Alvarez-Ortega, C.7
-
35
-
-
31544448331
-
Microbial biogeography: putting microorganisms on the map
-
Martiny JBH, Bohannan BJM, Brown JH, Colwell RK, Fuhrman JA, Green JL et al. (2006) Microbial biogeography: putting microorganisms on the map. Nat Rev Microbiol 4: 102-112.
-
(2006)
Nat Rev Microbiol
, vol.4
, pp. 102-112
-
-
Martiny, J.B.H.1
Bohannan, B.J.M.2
Brown, J.H.3
Colwell, R.K.4
Fuhrman, J.A.5
Green, J.L.6
-
36
-
-
0036308495
-
Genotypic and phenotypic diversity within species of purple nonsulfur bacteria isolated from aquatic sediments
-
Oda Y, Wanders W, Huisman LA, Meijer WG, Gottschal JC & Forney LJ (2002) Genotypic and phenotypic diversity within species of purple nonsulfur bacteria isolated from aquatic sediments. Appl Environ Microbiol 68: 3467-3477.
-
(2002)
Appl Environ Microbiol
, vol.68
, pp. 3467-3477
-
-
Oda, Y.1
Wanders, W.2
Huisman, L.A.3
Meijer, W.G.4
Gottschal, J.C.5
Forney, L.J.6
-
37
-
-
84899948480
-
-
vegan: Community Ecology Package. R package version 2.0-2.
-
Oksanen J, Blanchet G, Kindt R, Legendre P, Minchin PR, O'Hara RB, Simpson GL, Solymos P, Stevens MHH & Wagner H. (2011) vegan: Community Ecology Package. R package version 2.0-2. http://CRAN.R-project.org/package=vegan.
-
(2011)
-
-
Oksanen, J.1
Blanchet, G.2
Kindt, R.3
Legendre, P.4
Minchin, P.R.5
O'Hara, R.B.6
Simpson, G.L.7
Solymos, P.8
Stevens, M.H.H.9
Wagner, H.10
-
38
-
-
0035834039
-
Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites
-
Omura S, Ikeda H & Ishikawa J et al. (2001) Genome sequence of an industrial microorganism Streptomyces avermitilis: deducing the ability of producing secondary metabolites. P Natl Acad Sci USA 9821: 12215-12220.
-
(2001)
P Natl Acad Sci USA
, vol.9821
, pp. 12215-12220
-
-
Omura, S.1
Ikeda, H.2
Ishikawa, J.3
-
39
-
-
84871866449
-
Pathogen variation and urea influence selection and success of Streptomyces mixtures in biocontrol
-
Otto-Hanson LK, Grabau Z, Rosen C, Salomon CE & Kinkel LL (2013) Pathogen variation and urea influence selection and success of Streptomyces mixtures in biocontrol. Phytopathology 103: 34-42.
-
(2013)
Phytopathology
, vol.103
, pp. 34-42
-
-
Otto-Hanson, L.K.1
Grabau, Z.2
Rosen, C.3
Salomon, C.E.4
Kinkel, L.L.5
-
40
-
-
84863304598
-
-
R Core Team. . R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0, URL
-
R Core Team. (2013) R: A Language and Environment for Statistical Computing. R Foundation for Statistical Computing, Vienna, Austria. ISBN 3-900051-07-0, URL http://www.R-project.org/.
-
(2013)
R: A Language and Environment for Statistical Computing
-
-
-
41
-
-
62549137922
-
Resource amendments influence density and competitive phenotypes of Streptomyces in soil
-
Schlatter D, Fubuh A, Xiao K, Hernandez D, Hobbie S & Kinkel L (2009) Resource amendments influence density and competitive phenotypes of Streptomyces in soil. Microb Ecol 57: 413-420.
-
(2009)
Microb Ecol
, vol.57
, pp. 413-420
-
-
Schlatter, D.1
Fubuh, A.2
Xiao, K.3
Hernandez, D.4
Hobbie, S.5
Kinkel, L.6
-
42
-
-
84885898642
-
Resource use of soilborne Streptomyces varies with location, phylogeny, and nitrogen amendment
-
Schlatter DC, DavelosBaines AL, Xiao K & Kinkel LL (2013) Resource use of soilborne Streptomyces varies with location, phylogeny, and nitrogen amendment. Microb Ecol 66: 961-971.
-
(2013)
Microb Ecol
, vol.66
, pp. 961-971
-
-
Schlatter, D.C.1
DavelosBaines, A.L.2
Xiao, K.3
Kinkel, L.L.4
-
43
-
-
72949107142
-
Introducing mother: open-source, platform-independent, community-supported software for describing and comparing microbial communities
-
Schloss PD, Westcott SL, Ryabin T et al. (2009) Introducing mother: open-source, platform-independent, community-supported software for describing and comparing microbial communities. Appl Environ Microbiol 75: 7537-7541.
-
(2009)
Appl Environ Microbiol
, vol.75
, pp. 7537-7541
-
-
Schloss, P.D.1
Westcott, S.L.2
Ryabin, T.3
-
44
-
-
79951821961
-
Extracellular Streptomyces vesicles: amorphae for survival and defence
-
Schrempf H, Koebsch I, Walter S, Engelhardt H & Meschke H (2011) Extracellular Streptomyces vesicles: amorphae for survival and defence. Microb Biotechnol 4: 286-299.
-
(2011)
Microb Biotechnol
, vol.4
, pp. 286-299
-
-
Schrempf, H.1
Koebsch, I.2
Walter, S.3
Engelhardt, H.4
Meschke, H.5
-
46
-
-
0029913656
-
Phylogenetic analysis of Streptomyces spp. causing potato scab based on 16S rRNA sequences
-
Takeuchi T, Sawada H, Tanaka F & Matsuda I (1996) Phylogenetic analysis of Streptomyces spp. causing potato scab based on 16S rRNA sequences. Int J Syst Bacteriol 46: 467-469.
-
(1996)
Int J Syst Bacteriol
, vol.46
, pp. 467-469
-
-
Takeuchi, T.1
Sawada, H.2
Tanaka, F.3
Matsuda, I.4
-
47
-
-
79957613599
-
mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods
-
Tamura K, Peterson D, Peterson N, Stecher G, Nei M & Kumar S (2011) mega5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods. Mol Biol Evol 28: 2731-2739.
-
(2011)
Mol Biol Evol
, vol.28
, pp. 2731-2739
-
-
Tamura, K.1
Peterson, D.2
Peterson, N.3
Stecher, G.4
Nei, M.5
Kumar, S.6
-
49
-
-
0031041541
-
Plant diversity and ecosystem productivity: theoretical considerations
-
Tilman D, Lehman CL & Thompson KT (1997) Plant diversity and ecosystem productivity: theoretical considerations. P Natl Acad Sci USA 94: 857-1861.
-
(1997)
P Natl Acad Sci USA
, vol.94
, pp. 857-1861
-
-
Tilman, D.1
Lehman, C.L.2
Thompson, K.T.3
-
50
-
-
84925230631
-
Subinhibitory antibiotic concentrations mediate nutrient use and competition among soil Streptomyces
-
Vaz Jauri P, Bakker MG, Salomon CE & Kinkel LL (2013) Subinhibitory antibiotic concentrations mediate nutrient use and competition among soil Streptomyces. PLoS ONE, 8: e81064.
-
(2013)
PLoS ONE
, vol.8
-
-
Vaz Jauri, P.1
Bakker, M.G.2
Salomon, C.E.3
Kinkel, L.L.4
-
51
-
-
34548293679
-
Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
-
Wang Q, Garrity GM, Tiedje JM & Cole JR (2007) Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73: 5261-5267.
-
(2007)
Appl Environ Microbiol
, vol.73
, pp. 5261-5267
-
-
Wang, Q.1
Garrity, G.M.2
Tiedje, J.M.3
Cole, J.R.4
-
52
-
-
0034752042
-
How many antibiotics are produced by the genus Streptomyces?
-
Watve MG, Tickoo R, Jog MM & Bhole BD (2001) How many antibiotics are produced by the genus Streptomyces? Arch Microbiol 176: 386-390.
-
(2001)
Arch Microbiol
, vol.176
, pp. 386-390
-
-
Watve, M.G.1
Tickoo, R.2
Jog, M.M.3
Bhole, B.D.4
-
53
-
-
0027283934
-
Effects of grazing by the free-living soil amoebae Acanthamoeba castellanii, Acanthamoeba polyphaga, and Hartmanella vermiformis on various bacteria
-
Weekers PHH, Bodelier PLE, Wijen JPH & Vogels GD (1993) Effects of grazing by the free-living soil amoebae Acanthamoeba castellanii, Acanthamoeba polyphaga, and Hartmanella vermiformis on various bacteria. Appl Environ Microbiol 59: 2317-2319.
-
(1993)
Appl Environ Microbiol
, vol.59
, pp. 2317-2319
-
-
Weekers, P.H.H.1
Bodelier, P.L.E.2
Wijen, J.P.H.3
Vogels, G.D.4
-
54
-
-
0032170134
-
Evidence for horizontal transfer of antibiotic-resistance genes in soil populations of streptomycetes
-
Wiener S, Egan H & Wellington EMH (1998) Evidence for horizontal transfer of antibiotic-resistance genes in soil populations of streptomycetes. Mol Ecol 7: 1205-1216.
-
(1998)
Mol Ecol
, vol.7
, pp. 1205-1216
-
-
Wiener, S.1
Egan, H.2
Wellington, E.M.H.3
-
55
-
-
0022618049
-
The ecology of antibiotic production
-
Williams S & Vickers J (1986) The ecology of antibiotic production. Microb Ecol 12: 43-52.
-
(1986)
Microb Ecol
, vol.12
, pp. 43-52
-
-
Williams, S.1
Vickers, J.2
-
56
-
-
0034450921
-
Molecular detection of bacterial and streptomycete chitinases in the environment
-
Williamson N, Brian P & Wellington EMH (2000) Molecular detection of bacterial and streptomycete chitinases in the environment. Antonie Van Leeuwenhoek 78: 315-321.
-
(2000)
Antonie Van Leeuwenhoek
, vol.78
, pp. 315-321
-
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Williamson, N.1
Brian, P.2
Wellington, E.M.H.3
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